Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02017 and BSU18910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:19:23
# Commandline: needle
# -asequence dna-align/BSNT_02017___rapK.1.22522.seq
# -bsequence dna-align/BSU18910___rapK.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02017___rapK-BSU18910___rapK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02017___rapK-BSU18910___rapK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02017___rapK
# 2: BSU18910___rapK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1230
# Identity: 762/1230 (62.0%)
# Similarity: 762/1230 (62.0%)
# Gaps: 228/1230 (18.5%)
# Score: 2099.5
#
#
#=======================================
BSNT_02017___ 1 ATGAGTAAACTTGCTTCTGAATATGTTGCTAATTTCT----TAAATGAAT 46
||||||||..|.|||||||||..|||.|||| || |.|||||.|
BSU18910___ra 1 ATGAGTAAGATCGCTTCTGAAGTTGTCGCTA----CTACACTGAATGACT 46
BSNT_02017___ 47 GGTATATGGCCATAAAACAGCAGAATGTTGAGGCTGCTGA------AAAA 90
||||.||.||.||||||.|.||.||.||||| ||| ||||
BSU18910___ra 47 GGTACATTGCTATAAAAAAACAAAAGGTTGA------TGAATCAATAAAA 90
BSNT_02017___ 91 TATTTTAAAGAAGTCA--AATCTTTATTTGATGACATGGAAGAAGACCAG 138
||||.|..|||..|.| ||.||| ||||||||.|||||||||||.||.
BSU18910___ra 91 TATTATTCAGAGATAAAGAAACTT--TTTGATGAAATGGAAGAAGATCAA 138
BSNT_02017___ 139 GAAG-TATTGATGTATTACTCTCTACTTGAAGAGAGGCATAAAATGATGA 187
|||| |.||| .||||||...||||.|.|||||.||.|||||||||.||.
BSU18910___ra 139 GAAGTTCTTG-CGTATTATAGTCTATTAGAAGAAAGACATAAAATGTTGC 187
BSNT_02017___ 188 TGTA----TCAAGTAAAAGGGACAGACTTT-CCAAAGCATTCATACTTCA 232
||.| |||.| .|||.||.|||| |.||||||..|.|| ||..
BSU18910___ra 188 TGCATTCTTCACG-----AGGAGAGCCTTTACAAAAGCACACCTA-TTTT 231
BSNT_02017___ 233 ACAAAAGACATGCAAGAGAAATTCA----AAAAACA---GATAACATGAT 275
||..||||||..||| ||.|||| ||||||| ||||| ||
BSU18910___ra 232 ACTGAAGACAATCAA---AACTTCATAACAAAAACAAATGATAA----AT 274
BSNT_02017___ 276 T-GAGTACTACTTCTTTTTGTTTGAAGCGTTATACGAATCCTACAATCGA 324
| ||.|||.||||.|.|||.||||||||..|.|||||..|.|||||...|
BSU18910___ra 275 TAGAATACAACTTTTATTTATTTGAAGCAATGTACGAGGCATACAACAAA 324
BSNT_02017___ 325 AATTTTGA--GAATGCCATAAGCTTATTTAAAATCGCAGAGAAAAAGCTA 372
||.|.||| || ||.||.|.|.|||.|..|.|.||.|||||||||||.
BSU18910___ra 325 AACTATGATCGA--GCAATTAACCTATATGGATTAGCTGAGAAAAAGCTT 372
BSNT_02017___ 373 TC-GATCATTCCCGATGAAATTGAAGCTGCTGAATTTTATTCTAAAGTTG 421
.| || .|||||.||||||||||||||.|||||||||||.||||||||..
BSU18910___ra 373 GCAGA-AATTCCAGATGAAATTGAAGCAGCTGAATTTTACTCTAAAGTCT 421
BSNT_02017___ 422 CGTCAATGTAC--ATGATGCTCCGG-----CAAAGTATTGTTTCATTAAA 464
| .||| || ||.|||..| |||||.|||||..||..|.|
BSU18910___ra 422 C------TTACTTAT-ATACTCTTGTTAAACAAAGCATTGTGGCACAACA 464
BSNT_02017___ 465 TTATATAAACAACGCA--CTCAACATTTATA-AAGGGA----ATGAAAAT 507
|||||||||.||.||| .|||| |||| |||.|| .|| ||
BSU18910___ra 465 TTATATAAAAAATGCAATTTCAA----TATATAAGCGACACCCTG---AT 507
BSNT_02017___ 508 TATAAAAGGAAGTATGC-AACTGCC--CTT-----ATGGTTGTCGGAACT 549
||||| |||| ||||..| |.| |||.|||..|...|.
BSU18910___ra 508 TATAA--------ATGCAAACTAGCTACATCAACAATGATTGCAGCTGCA 549
BSNT_02017___ 550 AACTATACAGATCTAGGCCAATTTGATAAAGCTGAAGAAGCTTATTTCCA 599
||||||.|.|||.|....|.||||||..||||.|||.||..|||.||..|
BSU18910___ra 550 AACTATGCTGATATGAAACGATTTGAGGAAGCAGAACAATATTACTTAGA 599
BSNT_02017___ 600 AGCCATTAGA-ATTTCAAAAGAGCTTGATGATAAATTTTTCGAAGCGCAA 648
|||.||| || |||.|||||||.....|.|||.|||||||..||||.|||
BSU18910___ra 600 AGCAATT-GATATTGCAAAAGAAACAAAAGATGAATTTTTAAAAGCTCAA 648
BSNT_02017___ 649 --ATTCACCACAATTTAAGTAT--TACATACTCA--GCAGCAAACAGATC 692
||| .||||||.|.||||| |..||.||.| |.|.|||||
BSU18910___ra 649 TTATT--TCACAATCTTAGTATCGTTTATTCTGATTGGAACAAAC----- 691
BSNT_02017___ 693 CCAAGACTGTCTCAACGCACTGA--------GAAAAGCCATAAGAAATAA 734
||| .|.||.|||.||| .||||||.|||.|||||.|
BSU18910___ra 692 ------CTG-ATAAATGCATTGAATCTCTTGAAAAAGCAATAGGAAATGA 734
BSNT_02017___ 735 AGAGTGGCGACAATCAGTTTATTACATTAACTCTCTTTACATGGCTACCA 784
|...|||..|||.||..|||||||.||.||.|||.|.|.||||...|..|
BSU18910___ra 735 ATCTTGGTTACATTCGATTTATTATATAAATTCTTTATTCATGATGATTA 784
BSNT_02017___ 785 AAGAGTTATTCCTCATGGATCAAAAAGAT-AAAGCTGTATATTATTACAA 833
||||..|.||....||.|| |.||||.|| |||||..|..|||.||||||
BSU18910___ra 785 AAGAACTCTTTAAAATTGA-CGAAAAAATGAAAGCCATTAATTTTTACAA 833
BSNT_02017___ 834 AAAAGGACAGGAAAATTTAACCCAGA--AA--GAGAATAAAGTGTATGAG 879
.||||.|||||||| .||.||.| || |||||||||||.||.||.
BSU18910___ra 834 TAAAGCACAGGAAA----GACTCATATTAATGGAGAATAAAGTATACGAA 879
BSNT_02017___ 880 GCTAAAATAAACATCATTTATGCAC--TTCTT-----------CAAGATA 916
||.|||||.|.||||.|.||| .|| ||.|| .||.|||
BSU18910___ra 880 GCCAAAATCAGCATCCTGTAT-AACCTTTATTGTGGGGAATTAAAAAATA 928
BSNT_02017___ 917 A--TCAAAACGAAACCATTG----AGCAATGTTGGAGTTACATTCATTTC 960
| ||||.| |||| ||.|||.|| ||||| |||
BSU18910___ra 929 ATTTCAATA-------ATTGTATTAGTAATATT-GAGTT-------TTT- 962
BSNT_02017___ 961 CTTCAAGAAAAG---AATG-ACTTAGACAGTGTTCTTGATCTTTCCTTGA 1006
|.||.|| |||| |||| ||.|||||...|||..|.||||..|
BSU18910___ra 963 -----AAAACAGCAAAATGAACTT-GAAAGTGTAGATGAATTGTCCTACA 1006
BSNT_02017___ 1007 TTATCTCTCAGTACTGCGAGGAGAAAGAATGTT-------ATAAGGATGC 1049
| || |||| ||.||.||| ||| |.|||
BSU18910___ra 1007 T--------AG--CTGC-------AAAAAGGTTTGAATCAATA--GGTGC 1037
BSNT_02017___ 1050 TCTTGAA-------------TTTTCTAAGCGAGCTATTTTAGCCGAAAAG 1086
|.||||| |||||.|.|||| ..||||..||.|||.||
BSU18910___ra 1038 TTTTGAAGAAGCAACGAGCTTTTTCAATGCGA-AAATTTGGGCTGAACAG 1086
BSNT_02017___ 1087 AAAATGAGGCAGTTGGAGGGAATAGGATGA 1116
|||||||..|||.||||||||||...||||
BSU18910___ra 1087 AAAATGAATCAGGTGGAGGGAATCTTATGA 1116
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