Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01364 and BSU19030
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:18:14
# Commandline: needle
# -asequence dna-align/BSNT_01364.1.22522.seq
# -bsequence dna-align/BSU19030___yobO.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01364-BSU19030___yobO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01364-BSU19030___yobO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01364
# 2: BSU19030___yobO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2881
# Identity: 1389/2881 (48.2%)
# Similarity: 1389/2881 (48.2%)
# Gaps: 1007/2881 (35.0%)
# Score: 2599.0
#
#
#=======================================
BSNT_01364 1 ATGGAAAATTATACAACGTTTTTAGGTCTTTACAAACCTGAAAGCACTGA 50
|||| |.|| ||||| |||.|| ||.||||
BSU19030___yo 1 ATGG-------TTCA----TTTTA---------AAAACT----GCCCTGA 26
BSNT_01364 51 AAGTATTGAAATTG---ATTC-CAAGCTTGCCGAGAATTTCGAAACGATT 96
...|..|..||..| |||| ||..||..||..||||||..|..|||.|
BSU19030___yo 27 TCCTTCTCTAAACGCCAATTCTCAGTCTCACCCCGAATTTTCATCCGAAT 76
BSNT_01364 97 GATAGTAAAATTGGGATTGCATTAAG----TAATGGAATAACAACTTTTG 142
||| ||.|| |||||| .||||.|| ||||||
BSU19030___yo 77 --TAG-AACAT---------ATTAAGACAAGAATGCAA----AACTTT-- 108
BSNT_01364 143 AAAACTTAA-------ATGAAAGACTCAAAAT------------------ 167
.|||| .|.|.|||| ||||||
BSU19030___yo 109 ----ATTAAGCACTCGGTTACAGAC-CAAAATATCGAAGTTACTGACGCA 153
BSNT_01364 168 -GTATGA-----GAA-CAGA------------TTTGAGTACCTTGATGAA 198
|..||| ||| .||| |||.| |.|||
BSU19030___yo 154 AGGGTGACGGCCGAAGGAGAGGTCACCTCTCTTTTAA--------AAGAA 195
BSNT_01364 199 -----CGAAACGTAATGGATTATGG------AGCTAAA--------GGA- 228
|||.|.|.||| |||||.| |.||||| |||
BSU19030___yo 196 CGTCTCGACAAGGAAT--ATTATAGGCTTTTATCTAAAATCACCCGGGAA 243
BSNT_01364 229 ------------GA---CGG----GGTCACAGATG---------ATACGC 250
|| ||| |.|| |||||| ||||..
BSU19030___yo 244 GTAAATGTGGCTGACTTCGGCGCTGTTC-CAGATGGAAGAGACAATACTG 292
BSNT_01364 251 AAGCATTTC--------ATGATGCG---ATGGCCGAAGGCGGTTATCTCA 289
||||.|||| || || |||||||| .|||
BSU19030___yo 293 AAGCTTTTCGAAAAGCAAT----CGGGAATGGCCGA----------GTCA 328
BSNT_01364 290 ---TAAAAGTCCCTGCAGGCGTATTTAGGGTATCTGGCTTGCTCGTTC-- 334
||.|.||.||.||.||.|.| |..|||||||
BSU19030___yo 329 AAGTACATGTTCCAGCGGGAGAA---------------TACCTCGTTCAA 363
BSNT_01364 335 ----------------CTTCGAATACAATGCTGGTTGGAGCGGGTAAAAA 368
|||.||..|||| |.||||||...||| |
BSU19030___yo 364 GGGATTAAACTTCCATCTTGGACAACAA---TTGTTGGACAAGGT----A 406
BSNT_01364 369 AAGGACCATCATCA-AGTTATTA--------GACGATACGCCAG------ 403
|||| .|||| |||.|||| ||.||.||.||||
BSU19030___yo 407 AAGG-----GATCACAGTGATTAAATTGCATGAAGACACTCCAGCGCATG 451
BSNT_01364 404 --TTGGTCACTCTGTACTCACCAATAGTGATCATACAAATGGTAATGAAA 451
|.|||.| |.||.|||..||||.||..||||||.|||...|
BSU19030___yo 452 AATGGGTGA--------TTACAAATGATGATTATCAAAATGGAAATCGCA 493
BSNT_01364 452 ATATCTACATTGGACA---TTTGACACTGGACTGGAAT--AA--AGATAC 494
||||.| |||..|| ..||.||.|.||||||||| || |||.|
BSU19030___yo 494 ATATTT---TTGTCCAAGGAATGTCATTAGACTGGAATCCAAGTAGACA- 539
BSNT_01364 495 GCGTCCTGCTGGATG-GAAGATCCCTAAGGGGCCCACT--TCAAGCTGCT 541
.|||.|..|| ||| |||| |||||..||.| ||.||.||.|
BSU19030___yo 540 -----ATGCGGTGTGAGAA-ATCC---AGGGGGACAGTTCTCCAGTTGTT 580
BSNT_01364 542 TGCTTTTTGCAAATGTGGATTACTCTTTTGTAGAGC----ATGTTTTTGC 587
|...||||||.||.||.||.|| |..||.||.| ||||....||
BSU19030___yo 581 TAACTTTTGCTAAGGTTGAATA----TGGGTGGATCAAAGATGTGGAAGC 626
BSNT_01364 588 AAAAAATGCCGGCCTTCACGGGTTTGATGCTACAAGCCCTAATTATAA-- 635
.|..||.||.||.|||||.||..|||||..||||...||.|..|||.|
BSU19030___yo 627 GATTAACGCAGGTCTTCATGGTATTGATATTACATCGCCAACGTATGACC 676
BSNT_01364 636 ------CAGACAC-----GGAGAAAATGA-TGATCCTACCTTTTATCAGC 673
|.||.|| |||.|||| || .|||| |...|.|||
BSU19030___yo 677 ATTTGCCTGATACCGATTGGACAAAA-GACGGATC--AAGATATAT---- 719
BSNT_01364 674 CTGG-TGGCTGCAACTTTGTAACCTTCTCATATTGCGAAGCAACAGGCTC 722
.||| |.|.| ||||.|||.| ||||| ||.||
BSU19030___yo 720 TTGGATCGAT--AACTGTGTGA------CATAT------------GGTTC 749
BSNT_01364 723 TGGCGATGA--TAATTTCACATGTCACTTTGGAAAGC--ATACGACTTTT 768
.||.||.|| ..|||.| || |.|.|| |.||| ||||..||||.
BSU19030___yo 750 AGGAGACGACGGCATTAC-CA---CCCATT--ATAGCGAATACATCTTTA 793
BSNT_01364 769 AGTC--ATTGTCTTTCTTACCATCCGATGGGG-------TTAAATGATGG 809
..|| |.||.|.|||.....||||| .|||| ||...|||.||
BSU19030___yo 794 TTTCAAACTGCCATTCAGGAAATCCG-CGGGGAACAGAATTTGCTGAAGG 842
BSNT_01364 810 -GTCTTCAAATACAAACTGTTTTGAAATCGATGATGGCTCTCAGG-ATGT 857
|| ||||||..|.|||.|..|.|||||.||.||.|||||| ||| ||||
BSU19030___yo 843 TGT-TTCAAACTCCAACGGAATAGAAATTGACGACGGCTCT-AGGCATGT 890
BSNT_01364 858 AATGG---TTG-ATAGCTGCATCGCAATTGG-AGGAGTTCGAGGATTTGA 902
.||| ||| |||.|| |..|||..|| |..| |.||.|||.||||
BSU19030___yo 891 -GTGGCTTTTGAATAACT---TTACAAGCGGCAACA-TCCGCGGAGTTGA 935
BSNT_01364 903 AATTAAAGCTCATG-ATTATGCTCCGGCT-GCAAAAAGAGTTCAACTTGT 950
|.|.|||||.|||| |.|.||..|.|.|| .|||||
BSU19030___yo 936 AGTAAAAGCCCATGAACTGTGGCCAGCCTCTCAAAA-------------- 971
BSNT_01364 951 GAACTGCCGTGCCTATGAAA-------------AT-GCAATTAGTTTTTG 986
|||.|.|||.|.| || ||.|| |||..||
BSU19030___yo 972 -------CGTCCATATCATAGGCCATATTTCTTATCGCGAT--GTTCGTG 1012
BSNT_01364 987 CA-------TTCGGCATATAGGACACCACACAGCAAGT----GATCCTCA 1025
|| ||||.|||||.||.||| ||.|||.| ||||||.|
BSU19030___yo 1013 CATTTGATCTTCGTCATATTGGTCAC----CATCAAATTACAGATCCTGA 1058
BSNT_01364 1026 ATCAG--CATCAGCTCATGACGTTCAGCTGGCTAACTGTATCGCATATAA 1073
| || ||.||||..|.|| ||.|..||| |||
BSU19030___yo 1059 A--AGCACAACAGCATACGA--------TGTCACACT------CAT---- 1088
BSNT_01364 1074 CCCTAAGCCGAGTGATCTGTACAAAGGGGCAGGGCCGAATGCATTG---C 1120
|||| |||.|| |||| ||| |
BSU19030___yo 1089 ------------TGAT-TGTTCA-----GCAG-----------TTGAACC 1109
BSNT_01364 1121 AAATTTCA-----GGTTACGATGGCGT-----CAATG-----TGGTTAAT 1155
|..||||| ..||||||||..|| ||| | ||||||.|
BSU19030___yo 1110 AGTTTTCAACTCGCTTTACGATGCTGTGACCCCAA-GAGCGCTGGTTATT 1158
BSNT_01364 1156 T---------------TTCATGCTATATGCGATGATTC------------ 1178
| ||.||| ||.||| |||||
BSU19030___yo 1159 TCGGCATATAAAAACGTTAATG---TAAGCG--GATTCACAGCGATTGGT 1203
BSNT_01364 1179 -CTCCA----TTAACTATAAGGGAAATTCAGTCGTAAGCGTGTATTAT-- 1221
.|||| .|.|.|||||.|.|||..|.||||||..|.||.|.|||
BSU19030___yo 1204 GATCCAGACTATGATTATAAAGAAAACCCTGTCGTAGCCTTGCAATATCG 1253
BSNT_01364 1222 ------AAAGGGCGTCTAATCAATTTAAAGAATATAACGATTCGAGGATT 1265
||| |.|||.|| ||||.| .|||.|..|||||.||.||
BSU19030___yo 1254 CAGCCAAAA-----TATAACCA--TTAATG-GTATTAAAATTCGCGGTTT 1295
BSNT_01364 1266 TAAAACTGCTGATAATGATCTTTATATTGT-AGGTGGCGACAATTCTGTC 1314
|||||..||.|.|..||||.||.|| ||.| |||.|| ||
BSU19030___yo 1296 TAAAAAAGCCGGTGTTGATATTAAT-TTATCAGGCGG-----AT------ 1333
BSNT_01364 1315 GGCAAGGTAA---TGATT--------------GATGGTGTGACATTGATC 1347
||| .||| ||||| .|| |.|||.|||.||
BSU19030___yo 1334 --CAA-ATAAAACTGATTATATTAAAATTTCAAAT--TTTGATATTTAT- 1377
BSNT_01364 1348 GATTCAGC-CGAAAAGGGTGTTGTTT---TTGGGAGCGGTATGTACGAAT 1393
.|.||.|| |.|||||| ..||| |.||..|.||..|.||| |||
BSU19030___yo 1378 AAATCTGCTCCAAAAGG----AATTTCAATCGGTGGAGGCCTCTAC-AAT 1422
BSNT_01364 1394 CTGTAGTTAGTAATGT--ATGGGGGCAAAGATCGCCTAAAAATAACAGTG 1441
||.|.||.|.| |||| ||.||| .|..|.|.|||.||
BSU19030___yo 1423 -----GTCAATATTCTAAATGG----AACGAT----GATTACTGACAATG 1459
BSNT_01364 1442 GTACAGTGGGAATT-------------------------TTTTCTGTTGA 1466
|.|||||.|.|||| ||.||.||..|
BSU19030___yo 1460 GGACAGTTGCAATTCAGTCCCCCAATAATCAGGCCACAATTCTCGGTGTA 1509
BSNT_01364 1467 CCCTGATCTTAATGTTTCTAATTGTGACTTT-----------TC--AGGC 1503
| .|||..||.||| ||.||| | || ||||
BSU19030___yo 1510 C---AATCAGAAGGTT----ATAGTG----TGGCAGCCTCAATCAAAGGC 1548
BSNT_01364 1504 ------TACGAAACAG---------ATTTTAAGATTGGCGGC------GT 1532
|||.||..|| |||| ||..||.||| .|
BSU19030___yo 1549 CAAACATACCAACAAGTTCCAATCAATTT---GAAAGGAGGCATACAGCT 1595
BSNT_01364 1533 TGTGACGCCGTACT--TTTTG--TTTAA---------------------- 1556
||..|||.|.| || .|||| .||||
BSU19030___yo 1596 TGCAACGACCT-CTGGCTTTGCCGTTAACCAAACAAGCGCAGTTATAGCA 1644
BSNT_01364 1557 ----------ACAT--------------AAAGGAA-GCGG-GATTA---- 1576
|||| ||||.|| |||| .||||
BSU19030___yo 1645 GGTACCGGCGACATTACGGCCCGCGGAGAAAGAAATGCGGTCATTAGCTC 1694
BSNT_01364 1577 TT--------------------GGCTCTCGTG-ATTCCCA--CGCTACTG 1603
|| ||||||||.| ||| | ||||.||.
BSU19030___yo 1695 TTCTGGAGGCTCCAGTACTGAAGGCTCTCGCGCATT---AATCGCTTCTT 1741
BSNT_01364 1604 GAAATAA---TAATTTTGTAGCTGGATCTGTTCGAAGC----AGAGCA-- 1644
.|||||| ..||.||..| ||| ..|.|||| |||.||
BSU19030___yo 1742 CAAATAACGCACATATTAGA---GGA----AACCAAGCGTCAAGAACAAT 1784
BSNT_01364 1645 ACTGGGGCTGCTCAATCTTCTGTGATAGCCTCATATAATAC--GATCAAT 1692
|||| |||||||..| ||||.|||| ||
BSU19030___yo 1785 ACTG-----------TCTTCTGAAA-------ATATTATACTTGA----- 1811
BSNT_01364 1693 CCGAACTCAGACTCTGTTGCTTTAGGATGGGCAAGTGGGAGCACACCATC 1742
.|||| ||.||.|.|| ||||.|.||
BSU19030___yo 1812 -GGAAC-CATACACCGT------------GGCAGGAGG------------ 1835
BSNT_01364 1743 CTCATCAAAC-AGAAAG------ATAGAAT---TTCATGCAAAAGATGGA 1782
|||||||.| |.|||| .|.||.| |||..|.|| |.||.
BSU19030___yo 1836 -TCATCAATCAATAAAGTGGCTTCTTGACTCTGTTCGGGGAA---ACGGG 1881
BSNT_01364 1783 ACGATTAAGGCTTCAGGAAGCATAAAAAGTTCCCAAACGTTCT-----CG 1827
|||.||...|.|.| ||..||||| |||| .|
BSU19030___yo 1882 ACGTTTGCCGGTGC---------AATCAGTTC-------TTCTTTAGGTG 1915
BSNT_01364 1828 GATTACGCTGAATATTTTGAGAGCCTAAGCGGTGAAAAAATTCCGGCAGG 1877
|| ||.|..||.|||||||||||...||..||..|...|||.|...|.||
BSU19030___yo 1916 GA-TATGGAGAGTATTTTGAGAGTTCAACTGGACAGTTAATCCATACTGG 1964
BSNT_01364 1878 AACCCTAGTTACTTTGGAG-GGTGATAAAATTAGACCTGCAAAAAAAGGT 1926
.||..|.||.||||| .|| |||||.||||||...||.||.||....||.
BSU19030___yo 1965 TACAATCGTGACTTT-AAGAGGTGAAAAAATTGTGCCCGCGAATGTTGGA 2013
BSNT_01364 1927 GACTTTATGCTTGGAGTTATTTCTGAAA---CAGCTGGTGTGATAC-TTG 1972
||.|.|||||||||.||||||||.|||| ||||| |.| ||
BSU19030___yo 2014 GATTATATGCTTGGCGTTATTTCAGAAACTTCAGCT-------TTCATT- 2055
BSNT_01364 1973 GTGAGTCA--AGCTTCCA--TTGGTCTGGAA-----GATACCTGAAGAAT 2013
||| |||.|||| ||.||||||.| |.||..|||..|||
BSU19030___yo 2056 -----TCAGGAGCCTCCAGTTTCGTCTGGCAGGGCCGTTATTTGACAAAT 2100
BSNT_01364 2014 GATTTTGGCGGGTATATTTATGAAAAACAGAAAGATGCCAATGGCCAAAT 2063
||.||.|||||.|.|||||||||||....||..|||| .|| |||.
BSU19030___yo 2101 GAGTTCGGCGGATTTATTTATGAAACGGTGACTGATG----AGG--AAAG 2144
BSNT_01364 2064 CG------TCATGGCG----CCTATGGAAAACCCTGATTATAAGCCAGAT 2103
|| |||| .|| ||.|...||||.||.||.|| .|||
BSU19030___yo 2145 CGGTGAACTCAT-ACGTGTTCCCAAACAAAATCCAGACTA------CGAT 2187
BSNT_01364 2104 A---------AG---AACTATGCCTCTAGGGAAGAGAGGGATGAATGGAA 2141
| || ||.|||...||..|||.||..||.||.||||||.|
BSU19030___yo 2188 ACAGCGCTGGAGGCAAATTATCATTCACGGGCAGCAAGAGACGAATGGCA 2237
BSNT_01364 2142 TGTTGTGGGCCTTGTAGGACAGGTTTATGTAAGATGC-----GACAGCAC 2186
.|||||.||..|.||.||.||...||||| ||| |||...||
BSU19030___yo 2238 CGTTGTAGGGTTGGTTGGCCAACATTATG-----TGCGTATTGACGAAAC 2282
BSNT_01364 2187 AGTAGAAGC-CGGAGACTTTATTCAAGCGCATAACAACGGAATTGCTACA 2235
.|| .||.| .|||||.|.|.||...||.||| ||.|||||.|..|||
BSU19030___yo 2283 TGT-CAATCAAGGAGATTATCTTACGGCACAT---AATGGAATAGGAACA 2328
BSNT_01364 2236 AAAACGGTATCTC-CTAAACAAAGGTGGCAGGTCATGAGAGT-------- 2276
|||.| | ||.||..|||.|||.|.||.||||.|.|
BSU19030___yo 2329 AAAGC-------CACTGAAGGAAGCTGGAAAGTAATGAAAATAACCTCTG 2371
BSNT_01364 2277 ------CATCAAAGAGTTCGACAAAAGTAAGGGATATGGAGTGGTTTTAG 2320
|||||.| |||| ||.|||||
BSU19030___yo 2372 CTTACACATCAGA---------AAAA-----GGGTATGG----------- 2396
BSNT_01364 2321 TTTTTAT---TCGGTAA-------------- 2334
||| || |||
BSU19030___yo 2397 ----TATCGCTC--TAACCGTCATCAAATAG 2421
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