Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06127 and BSU21470
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_06127.1.22522.seq
# -bsequence dna-align/BSU21470___sunT.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06127-BSU21470___sunT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06127-BSU21470___sunT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06127
# 2: BSU21470___sunT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2580
# Identity: 1318/2580 (51.1%)
# Similarity: 1318/2580 (51.1%)
# Gaps: 858/2580 (33.3%)
# Score: 2671.0
#
#
#=======================================
BSNT_06127 1 ------ATGATTTTAAAA-AAATAT-----CACTGTGTAAAACA----AA 34
|.|| |||| |||||| .||| ||||| ||
BSU21470___su 1 TTGAATAAGA----AAAAGAAATATGTTCATACT-----AAACAGTTTAA 41
BSNT_06127 35 TGGATGATAAAGATTGCGGTGCT-GCGTGTTTAGCAACGATTCTAAAG-- 81
|.| |.|.|||||.|| .|| ||.|||.|..|..|.|||.|||||
BSU21470___su 42 TAG----TCATGATTGTGG-ACTAGCTTGTATCTCGTCAATTTTAAAGTT 86
BSNT_06127 82 ----------CACTATGGATCAAAGATATC--ACTAGCGAAAATTCGAAA 119
.|||||||| |..|||.|| |||||....||||.|..|
BSU21470___su 87 TCATAACCTTAACTATGGA--ATTGATTTCTTACTAGACCTAATTGGGGA 134
BSNT_06127 120 TATTGCTGGC-ACAGATACACAAGGTACT--AATGTTCTTGGTGTA---- 162
||..|..||| |.||.| .|||..||| |.||||.|| |.||
BSU21470___su 135 TAAGGAAGGCTATAGTT---TAAGAGACTTAATTGTTATT--TTTAAGAA 179
BSNT_06127 163 -------ATAAAAGC-AGCAGAGACCCTTGGGTTTTCTGCAAAAGGAGTT 204
||||||.| || |.|.||||..| ||||| .
BSU21470___su 180 GATGGGGATAAAAACTAG----GCCACTTGAAT----TGCAA-------G 214
BSNT_06127 205 AAAGCTGATCAAACAGCTTTCG---------AACA---ACCGTTCCCTCT 242
||| ||.|.||| |||| |||| |..|.|||||..
BSU21470___su 215 AAA----ATAAGACA---TTCGAAGCCCTAAAACAAATAAAGCTCCCTTG 257
BSNT_06127 243 TCCAGCTATTGCACATGTGGTTTTAAATGGTCA--ATTATTG-CATTACA 289
|..|||| ||| |||.|.||..| |.|||.| |||||||
BSU21470___su 258 TATAGCT-TTG-----------TTAGAAGGGGAGGAATATGGACATTACA 295
BSNT_06127 290 TGGTCATACACAAAATTAAAAAAGATAA--AATTA-TTATTGCTGATCCA 336
|....|||.||.||||||.|| |||| |.||| ||.||..||||||.
BSU21470___su 296 TAACAATATACGAAATTAGAA---ATAACTATTTACTTGTTAGTGATCCT 342
BSNT_06127 337 GGAAAAGGTATAATCACCTATAGGAAAGATGAATTTTTTAAGATTTGGAC 386
|..||||..|.||| |.|||.|..|||.| ||||
BSU21470___su 343 GATAAAGACAAAAT-AACTAAAATAAAAA----------AAGA------- 374
BSNT_06127 387 CGGAATTTTAATTTTTATGGTTC-CAAGTGATACT---TATCAGCA---- 428
|||.|||.||..|..| ||| ||| ||| |||.||.|
BSU21470___su 375 -GGATTTTGAAAGTAAA---TTCACAA-----ACTTTATATTAGAAATTG 415
BSNT_06127 429 ACAAACAGACATT------------AGAAGTGTTAAAAAAGACATTTTAA 466
|||||.||.||.| |.||| .|.||||||.|||||.|
BSU21470___su 416 ACAAAGAGTCAATTCCTGAAAAAGAAAAAG-ATCAAAAAAAACATTCT-- 462
BSNT_06127 467 ATTTAATACTTCATCAA--AAAT-CTTTAATTATACATACAGCATT-AGC 512
|||||..|.|| |.|| |||| |||.|.||| .||| |.|
BSU21470___su 463 ------TACTTTTTTAAGGACATACTTT--TTAGAAATA---AATTGATC 501
BSNT_06127 513 ATCTTT----TATTATTACGATCTTC-------------GGTATT-CTG- 543
.|.||| |.||||| || |||| |||.|| |||
BSU21470___su 502 GTTTTTGTGATTTTATT--GA-CTTCCTTGTTCGTTGTGGGTCTTGCTGT 548
BSNT_06127 544 AGC----ACTTTTTAT------TTTC-AGACAATCATTGATCAAATTTTG 582
||| .|.|||||| |||| || ||||.|.||||.|
BSU21470___su 549 AGCTGGGTCGTTTTATATAAAGTTTCTAG-------TTGACCTAATTAT- 590
BSNT_06127 583 CCCA--ACGGTTTGAAGA-ACTCTTTACAT----ATTATTTCTATTGGAC 625
|||| |.|.|| |||| |.|||||| || ||.|.||..|| |.
BSU21470___su 591 CCCAAGAAGCTT--AAGAGAATCTTTA-ATCACAATCACTTTAAT---AT 634
BSNT_06127 626 TTATAATAATGTACCTATTTAAGGT---TCTTTTAACAGCTTTT---AGA 669
|.||||..|||..|.|| .|||||| |||| .|.|||| |||
BSU21470___su 635 TCATAAGTATGGTCTTA-ATAAGGTGCATCTT-----CGATTTTGTAAGA 678
BSNT_06127 670 CAATATTTAATGATTCTATTAGGTCAAAAATT--------AAGT------ 705
..||||||.||.|| |||||| ||||
BSU21470___su 679 TCATATTTGATAAT------------AAAATTGTCTTACAAAGTTGATAA 716
BSNT_06127 706 ----ATATCCATTATGCTGGGTTACTTTAAGCATGTTCTTAAGCTGCCTA 751
||.||.|.| |.|||.|||||..|.||....||..|.||||
BSU21470___su 717 AGAGATGTCAAAT------GTTTATTTTAATAAAGTAACAAAATTACCTA 760
BSNT_06127 752 TGAAATTCTTT-AGCACTAGAAAAGATGGTGA---AATTTTAGCTAGATT 797
|.||.||.||| |..|| |||.|||||||.|| ||||| ||.||||
BSU21470___su 761 TTAATTTTTTTGAAAAC-AGAGAAGATGGAGAGGTAATTT---CTCGATT 806
BSNT_06127 798 CAATG-----ATACA-AATAAAG---TTATTGATGCTA---TTGTCAGCG 835
||||| |||.| |.||||| ||.||..||||| ||||.|
BSU21470___su 807 CAATGATGGTATATATATTAAAGACTTTTTTAGTGCTAACTTTGTTA--- 853
BSNT_06127 836 CATCCTTGTCCGCAGTGCTCGATACATTTATGTTAATCATGG--TTGGGA 883
|.|||.|..|.|||| |.||.|||||..||| ||.|||
BSU21470___su 854 ---------CTGCAATAATTGATA---TAATTTTAATACTGGGATTAGGA 891
BSNT_06127 884 -TCTTTTTATATATTCAAAATA--CTTCTTTGTTTATAGTAAC-ATTAGC 929
|..|||||||||....||||| .|||||| |..|||| ||||
BSU21470___su 892 GTTATTTTATATAGAACAAATAACATTCTTT-----TCTTAACAATTA-- 934
BSNT_06127 930 TTTAATCCC----------CTTTTATATTCTAACTGTTTGGGTTTTT-AT 968
|..|||| ||||.|| .||||.|..|||.|.||||| ||
BSU21470___su 935 --TTCTCCCGATTTTGCTACTTTCAT-GTCTAGCGATTTTGTTTTTTGAT 981
BSNT_06127 969 GAAGCCCTATGAGAGTATTAATGACAATGAA-------------ATGGAA 1005
.| |.|||| ||.||| |||||.
BSU21470___su 982 CA-------------TCTTAA----AAAGAAAAATCAAAAACTGATGGAG 1014
BSNT_06127 1006 AATAATGCTCAA-----CTCACTTCAAA--AATTGT-TGAA-------AC 1040
.||||.|||.|| |||.|||..|| ||||.| |||| ||
BSU21470___su 1015 GATAAGGCTAAATCTACCTCTCTTTTAATTAATTTTCTGAAGAATATGAC 1064
BSNT_06127 1041 A------------TTAAGTA------------GTATAGAAACAATAAAAG 1066
| ||||.|| .|.|||||| |||...|.
BSU21470___su 1065 AACTGTTTATTCTTTAAATAAAACCTCGTTTTTTTTAGAAA-AATTTCAT 1113
BSNT_06127 1067 CTTACA-ATGCTGAATATATTATGTCATTTGAAACT--------GAAAAG 1107
|||||| |||.|.||.| |||| |.||.||.|| |.||||
BSU21470___su 1114 CTTACATATGATAAACA-ATTA----AATTCAACCTTTAGTGTAGCAAAG 1158
BSNT_06127 1108 CG-----ATTTG---TGAAATACTTGCAATCTTCTTTTAAACACGGTGTA 1149
| |||.| ||||||||| |.|.||..||
BSU21470___su 1159 -GCAGTTATTAGCAATGAAATACT----------------AAAAGGATTA 1191
BSNT_06127 1150 ATTGATAATCTTCAAAGTTCTATTAAGTTGTTTCTAGATTTAATAAGTGG 1199
| ||||||..|||.||| .|||||
BSU21470___su 1192 A---------TTCAAAACTCTTTTA---------------CAATAA---- 1213
BSNT_06127 1200 TGCATTGATACTATGGATCGGCGCTTGGCAAGTCATAAAGGGAAATATGA 1249
|.||.||||||.|.||..|..|.|||||..||| ||||
BSU21470___su 1214 -----TTATCCTATGGGTTGGGACAAGACAAGTTCTAA--------ATGA 1250
BSNT_06127 1250 --CAATTGGCCAG-TTGATTACA--------TATAACGCACTATTGGCAT 1288
|||| .|| |||..|||| ||||| .||| |||.|||.
BSU21470___su 1251 TTCAAT----GAGTTTGGGTACACTGCTATTTATAA-ACAC-ATTAGCAG 1294
BSNT_06127 1289 ATTTTTTGAACCCT---TTACAAAATATCATCTCACTT-------CAATC 1328
..|||||| || || ||..|.|||.|.| .|| |||||
BSU21470___su 1295 CCTTTTTG----CTAAGTT-CACTAGATCGTAT--ATTGAGTATGCAATC 1337
BSNT_06127 1329 CAAACTTCAGTCAG---CTTCGGTTGCTTCAAAGAGATTGGGAGAAATTT 1375
..|.|||||| ||| |.| ||||||||.|..|||| |||
BSU21470___su 1338 AGATCTTCAG-CAGGCACAT--GTTGCTTCCATAAGAT---------TTT 1375
BSNT_06127 1376 TAGATGAAG-AACCTGAAATACAAACATCTGAAGCAAGGGTTACCGATCC 1424
|.||.|.|| ||.|| ||.|| .|..||||||
BSU21470___su 1376 TTGACGTAGTAAACT---ATCCA-----GTTCAGCAAG------------ 1405
BSNT_06127 1425 AGCCTATATA-CAAGGCCCT----ATTGAAATAAACAATGTTGATTTTCG 1469
||| ||| | |||.||.|.||| ||||||||
BSU21470___su 1406 -------ATAGCAA-----TGAGAATTTAACTGAAC----TTGATTTT-- 1437
BSNT_06127 1470 ATACGGAA-CTCGAA--GGCTCATCTTAA--------------------- 1495
||.|.||| .||.|| .|.|.|||||||
BSU21470___su 1438 ATTCAGAATATCAAAACAGTTAATCTTAATATTGGGGCAGACCCAATGCG 1487
BSNT_06127 1496 -----------AAGATATTACACTGCATATT---CAAAAAGGAGAGAAAG 1531
||||||||| |.|..||||| ||.|||| ||.||||
BSU21470___su 1488 TTATATAGTTGAAGATATTA-ATTTAATATTAGACAGAAAG--GATAAAG 1534
BSNT_06127 1532 TTGCCT--TTGTTGGAGAAAGCGGTTCAGGAAAATCTAC-TTTG-ACTAA 1577
| ||| ||.||||||||||.|||.|.||||||..||| |||| |..||
BSU21470___su 1535 T--CCTTATTATTGGAGAAAGTGGTACTGGAAAAAGTACGTTTGCAAAAA 1582
BSNT_06127 1578 GCTTTTAATGAAATTTTATACAGCTGAATCAGGTGAG---ATTTTAATCA 1624
| |||....|||||.||||.| |.|.|.|.|.|| ||||...|.|
BSU21470___su 1583 G--TTTGTCTAAATTGTATAAA---GTACCCGATAAGTCAATTTATTTAA 1627
BSNT_06127 1625 ATGG-TTATCATATAAAT-GATA--TTCA--CACCAATGCGTTAAGGGAA 1668
|||| ||| .||||.||| |||| .||| .|.||| ||||..||
BSU21470___su 1628 ATGGATTA-GATATTAATCGATACGATCATTTATCAA-----TAAGAAAA 1671
BSNT_06127 1669 AGCATAAGT-TATATACCT---CAAGAATC----TCATTTTATACAAGGA 1710
||.|| | |||||| | |.|.|||| ||.||||| |.|||
BSU21470___su 1672 AGGAT---TGTATATA--TTGACGAAAATCCTTTTCTTTTTA---AGGGA 1713
BSNT_06127 1711 TCAATTCTTGAAAACCTTTTGCTTGGGAACTCAGGA-AGTTTTACCTTCG 1759
.|.|||...||.||.| |||||.||||| || |.||||
BSU21470___su 1714 ACCATTAAAGAGAATC-TTTGCATGGGA------GAGATTTTT------- 1749
BSNT_06127 1760 AAGAGATTATA--GAAGTTTGCAAAC--------AA---ACAAATGTACA 1796
|||.|.| ||| .|||.|||| || .|.|||| .||
BSU21470___su 1750 ----GATCAGAACGAA-ATTGAAAACGCGTGTATAATGTCCCAATG-CCA 1793
BSNT_06127 1797 TGA----TTTTGTCAAT--GATTTACCAATGAGATAC-------GATACT 1833
||| .|||||.|.| || |||..|| ||| .||..|
BSU21470___su 1794 TGAATTCATTTGTAACTTGGA-----CAAGCAG-TACAGTTATAAATTGT 1837
BSNT_06127 1834 CTCGTAGAGGAAAACGGGTCTAATTTATCTGGAGGCCAGAAGCAAAGACT 1883
|| ||||||||.||.|||.|||||..|||.||.||.|||.|..|
BSU21470___su 1838 CT-------GAAAACGGTTCCAATCTATCTACAGGACAAAAACAACGGTT 1880
BSNT_06127 1884 TGCAATTGCCAGGGCATTATTAAGAAAACCTAACA--TTCTTATAATGGA 1931
.|||.|.||.||.|||.|.|||....|||| ||| |..|.||..|.||
BSU21470___su 1881 AGCATTAGCAAGAGCAATTTTACATCAACC--ACAAGTATTAATTTTAGA 1928
BSNT_06127 1932 TGAATCAACAAGCAACCTCGATACGACGACCGAACAGGGAATATCAAAGA 1981
|||.|||..|...|||.|.|||.|| || .|||| ||||..
BSU21470___su 1929 TGAGTCATTATCTAACATTGATCCG--GA--TAACA--------CAAAAT 1966
BSNT_06127 1982 TGATTTACG----CTCAGACTGTCGATG-------TAACTACAATTATAA 2020
|||||||.| ||.|.||.| |||| |||.||...||||||
BSU21470___su 1967 TGATTTATGAAACCTTACACAG--GATGGATTGTTTAATTATTCTTATAA 2014
BSNT_06127 2021 TTGCTCATCGTTTAAGTA--CAATTA---TGAATTGCGACAAAATATTTG 2065
|||| |||..| |||.|| |.||.|.|.|.||||.|||.|
BSU21470___su 2015 ---CTCA-----TAATGACCCAAGTAACTTCAAATACAATAAAAAATTAG 2056
BSNT_06127 2066 ---TCATGGAA--AAT-GGAGAAATCATAGAGTATGGGAACCACAATGAT 2109
||| ||| ||| || ||.||||||| .||.|.||
BSU21470___su 2057 TATTCA--GAAACAATAGG----ATTATAGAGT---CGAGCTAC------ 2091
BSNT_06127 2110 TTATTGAAGAAAA-AAGGAAAGTA----CTATGAGTTGTGGGAGAACCAA 2154
|.| ||||| |||| |||| .|||||
BSU21470___su 2092 ---TCG--GAAAATAAGG--AGTATTCTATATGA---------------- 2118
BSNT_06127 2155 ATGCCATCGAGAGAGATGGTGACAATTTAG 2184
BSU21470___su 2118 ------------------------------ 2118
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