Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05020 and BSU25860

See Amino acid alignment / Visit BSNT_05020 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:37
# Commandline: needle
#    -asequence dna-align/BSNT_05020___yqcG.1.22522.seq
#    -bsequence dna-align/BSU25860___yqcG.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05020___yqcG-BSU25860___yqcG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05020___yqcG-BSU25860___yqcG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05020___yqcG
# 2: BSU25860___yqcG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1712
# Identity:    1221/1712 (71.3%)
# Similarity:  1221/1712 (71.3%)
# Gaps:         244/1712 (14.3%)
# Score: 4523.5
# 
#
#=======================================

BSNT_05020___      1 ATGAAAGTATTTGAAGCCAAAACACTGCTTTCCGAAGCTGAAAACCGTGC     50
                     |||||||||||||||||||||||..||||..||||.||||||||.||.||
BSU25860___yq      1 ATGAAAGTATTTGAAGCCAAAACCTTGCTCACCGAGGCTGAAAAGCGAGC     50

BSNT_05020___     51 AAAAGAATACAAAGATTTAAAAAGTAAAATGATCAAATTAAAGAAAGCAT    100
                     |.|.|||||||||||||||||||||||||||.||||||||||||||||.|
BSU25860___yq     51 ACAGGAATACAAAGATTTAAAAAGTAAAATGGTCAAATTAAAGAAAGCGT    100

BSNT_05020___    101 TCAAAGCTGTCGCTGATTTAGATGATAGTGAATTTTCAGGTAAAGGTGCA    150
                     ||||||||||.||.||||||||||||||.||.||||||||.|||||.||.
BSU25860___yq    101 TCAAAGCTGTTGCAGATTTAGATGATAGCGAGTTTTCAGGCAAAGGCGCT    150

BSNT_05020___    151 AATAACATCAAATCATTTTATGAAGATCAGGCCGGCATTGCTGACCAGTG    200
                     ||||||||.||||||||||||||||||||.||.||||||||||||||.||
BSU25860___yq    151 AATAACATTAAATCATTTTATGAAGATCAAGCTGGCATTGCTGACCAATG    200

BSNT_05020___    201 GATTGATCTAATTGAGATGAAAATATCTTTTTTAACGAGTATTCCTGGTA    250
                     |||||||.||||||||||||||||.|||||.||||||||||||||||||.
BSU25860___yq    201 GATTGATTTAATTGAGATGAAAATTTCTTTCTTAACGAGTATTCCTGGTT    250

BSNT_05020___    251 TCTTGGAAGACTCCAGCTTATCAGATGCCTACATAGAAGAATCCTTCCTA    300
                     |.||.|||||..|||.|||||||||||||||||||||||||.||||..||
BSU25860___yq    251 TTTTAGAAGATGCCAACTTATCAGATGCCTACATAGAAGAAACCTTTTTA    300

BSNT_05020___    301 GAGCATGAGTTGGCCAATGCTAATTCTAAATCAAAATCCATCATGTCAGA    350
                     |.|||||||.|.||.||.||..|..|.||||||||||||||.|||||.||
BSU25860___yq    301 GCGCATGAGCTTGCTAACGCCTACACCAAATCAAAATCCATTATGTCTGA    350

BSNT_05020___    351 ACAGAAAAAGGCCATCAAAGACATCTTAAATGAAATACACGATGTCCTTC    400
                     |||||||||.|||||.|||||.||.||||||||.||..|||||.|.||.|
BSU25860___yq    351 ACAGAAAAAAGCCATGAAAGATATATTAAATGATATCAACGATATACTGC    400

BSNT_05020___    401 CCTTAGATGTTTTTTCAACGGAAGATTTTAAAACTGAGTTATCTTCTGCT    450
                     |.||.|||.|.||.||.||.|||..||||||||.|||..|.||.|||||.
BSU25860___yq    401 CTTTGGATCTGTTCTCGACAGAAACTTTTAAAAATGAACTTTCGTCTGCC    450

BSNT_05020___    451 GAGAAAAAACGAAAA-AATACAGTCGAGAAAATAAGTGAAGTCGATGAGG    499
                     ||.||.||||||||| ||..|| |.||||||||...||||||.||..|..
BSU25860___yq    451 GAAAAGAAACGAAAAGAAGCCA-TTGAGAAAATGGATGAAGTTGACCAAA    499

BSNT_05020___    500 ACCTAACGTCAGAATACGCCTTGTCAGAAGCAAATGAACAAATGATTCAG    549
                     ||.||||.||||||||||...|.||||||||||||||||||||||||||.
BSU25860___yq    500 ACTTAACATCAGAATACGGACTATCAGAAGCAAATGAACAAATGATTCAA    549

BSNT_05020___    550 GCTGATTACCAAGCACTCATAAATGCAACAGCAAAAGGCAAGAGTGCCTC    599
                     ||||||||.|||||..|.||.|||||.||||||||||||||.||.|||||
BSU25860___yq    550 GCTGATTATCAAGCTTTAATGAATGCGACAGCAAAAGGCAAAAGCGCCTC    599

BSNT_05020___    600 TCCTATCCACTATAACGCAAAGGCTTATAGAGACAGTGAAATTCACAAGA    649
                     ||||||.||||||||.||.||||||||||||||||||||.||||||||||
BSU25860___yq    600 TCCTATTCACTATAATGCGAAGGCTTATAGAGACAGTGAGATTCACAAGA    649

BSNT_05020___    650 TGACTGAGGATGTAAAAAAACAATCGACTGATTATATCGCCTTTAAAGAT    699
                     ||||||||||||||||.||||||||.||.||.||.|||.|.|||||.||.
BSU25860___yq    650 TGACTGAGGATGTAAAGAAACAATCAACAGACTACATCTCTTTTAAGGAC    699

BSNT_05020___    700 CAGCAGGCCGAACAAAGAAGGCTAGCAAAAGAACAGGAAGAGCTAGCGAA    749
                     ||.|||||.|||||||||||..|.|||||||||||.|||||.||.|||||
BSU25860___yq    700 CAACAGGCGGAACAAAGAAGAATTGCAAAAGAACAAGAAGAACTGGCGAA    749

BSNT_05020___    750 CAGGCCATGGTACGAAAAGACGTGGGATGTTGTTTGTAATTTTACAGGAG    799
                     |||.||||||||.||||||.|.|||||||.||||||||||||||||||||
BSU25860___yq    750 CAGACCATGGTATGAAAAGTCTTGGGATGCTGTTTGTAATTTTACAGGAG    799

BSNT_05020___    800 AAGTCTCTGGATATTATGATTATAAAAGAGCCGCTGATGGAGTTGATCCT    849
                     |.||||||||||||||||||||||||||||||||||||||.|||||||||
BSU25860___yq    800 AGGTCTCTGGATATTATGATTATAAAAGAGCCGCTGATGGGGTTGATCCT    849

BSNT_05020___    850 GTTACCGGCGAAAAGTTGACAGAGGGCCAACGTGTAGCAGCTGGAGCGAT    899
                     |||||||||||||||.|.||.|..||.|||||.||.||.||.||.||.||
BSU25860___yq    850 GTTACCGGCGAAAAGCTAACTGCTGGACAACGGGTCGCTGCCGGTGCAAT    899

BSNT_05020___    900 GGCTGCGGCAGGTTATGTCCCGATTGTTGGATGGGCTGGAAAATTAGCAA    949
                     ||||||||||||.||..||||.||.||.||||||||.||.||||||||.|
BSU25860___yq    900 GGCTGCGGCAGGATACATCCCTATCGTAGGATGGGCAGGTAAATTAGCTA    949

BSNT_05020___    950 AAGGCGGAAAAGCTGTTTATTCAACCAGTAAAGCACTCTACACAGCAGAC    999
                     ||||.||||||||||||||||||||.|||||||||.|.||.|.|||||||
BSU25860___yq    950 AAGGTGGAAAAGCTGTTTATTCAACAAGTAAAGCATTGTATAGAGCAGAC    999

BSNT_05020___   1000 AAAGCACTTGATGTCTACAAAACGCCACAGACATTCCATGCTCTTCAAAA   1049
                     |||||.||.|||||.||.|||||.||..|||||||||||||.||||||||
BSU25860___yq   1000 AAAGCTCTCGATGTATATAAAACACCTAAGACATTCCATGCCCTTCAAAA   1049

BSNT_05020___   1050 TTCGAGTAAAGGTCTTTATGGGCTTGCTTCTGCGAACGGTTTTAGCGAAG   1099
                     .||.||.|||||.||||||||.|||||||||||.||.||||||||.||||
BSU25860___yq   1050 CTCCAGCAAAGGACTTTATGGACTTGCTTCTGCAAATGGTTTTAGTGAAG   1099

BSNT_05020___   1100 CTATAACAGGCCGCGACATGTTTGGCAATAAGATTTCAAAAGAACAGCAG   1149
                     ||||||||||.|||||.|||||.||.|||||..|.||.|||||...||| 
BSU25860___yq   1100 CTATAACAGGACGCGATATGTTCGGGAATAAAGTCTCCAAAGAGAGGCA-   1148

BSNT_05020___   1150 CATAACAGTATAAATGCAGCACTT-GCTGTTTTCATGCCATTTGGTGCAA   1198
                      |.|||||         ||| ||| |                ||||||||
BSU25860___yq   1149 -AGAACAG---------AGC-CTTAG----------------TGGTGCAA   1171

BSNT_05020___   1199 ----AAGGTT------TTTC--------CGGA------AAAACGGGCCTT   1224
                         ||.|||      ||||        ||||      ||||.|   |||
BSU25860___yq   1172 TGGCAATGTTGGTTCCTTTCGGAGCTCGCGGAATTAACAAAAAG---CTT   1218

BSNT_05020___   1225 AAAGC---------TTC------------ATCATCAACTGAAACC-GTAA   1252
                     ||.||         |||            |.||||.|||.|.||| |.||
BSU25860___yq   1219 AATGCAAAATCAAGTTCTCGAGTTAGCGAAGCATCGACTAACACCAGCAA   1268

BSNT_05020___   1253 -----CTCAAGTTACAGTTA----GTAGAAAAGGGGC-------TTT---   1283
                          ||.|||||.|   ||    |||.||||  |.|       |||   
BSU25860___yq   1269 AAAACCTAAAGTTCC---TAAAACGTACAAAA--GACCAACTTATTTCCG   1313

BSNT_05020___   1284 TAAAG----AAGCGAAAAGAGATGCCGGTATACCACGTGCTCAA-----C   1324
                     |||||    .||.||.|||...||  ||.|.|     |||| ||     |
BSU25860___yq   1314 TAAAGGCGTTAGAGATAAGGTTTG--GGAAAA-----TGCT-AAGGATTC   1355

BSNT_05020___   1325 AACCAGAATC----AATCAATCGTGTAGAAATGCGTACTGCTCCTCACGA   1370
                     |||| |.|||    ||..|..|||..|.|||               ||.|
BSU25860___yq   1356 AACC-GGATCTGTTAAAGACCCGTTAACAAA---------------ACAA   1389

BSNT_05020___   1371 AGGCGGTCGTGTAAT---TAAAGAT-AAAAATGGTA----------AAAT   1406
                               |||||   .|||||| ||..||||.|          |||.
BSU25860___yq   1390 ----------GTAATGAAAAAAGATGAACCATGGGATATGGGTCATAAAC   1429

BSNT_05020___   1407 CA--TTAGGACGAGAGAATACACCTTCACTAACAACAAAG-GC----GAA   1449
                     ||  |||.||....||||.||         |.|||||||| ||    |||
BSU25860___yq   1430 CAGGTTATGAATTTAGAAAAC---------ATCAACAAAGTGCGATGGAA   1470

BSNT_05020___   1450 AAAATTATTATACAAGATCA-----TAGCGCTGGACATGAAAAAGGTGGT   1494
                     |.||.|||||..|.|.|.||     ||  |.||.||||.|.||      |
BSU25860___yq   1471 AGAAATATTAGTCGAAAGCAATTTTTA--GATGAACATAATAA------T   1512

BSNT_05020___   1495 CAAGGTCCGCACTTTAACGTTAGACC--AATTGATAATACTCGAACAGGA   1542
                     |.||   ..||||.|.|      |||  |||| |...|.|||.||.||||
BSU25860___yq   1513 CCAG---ACCACTATCA------ACCCGAATT-ACCTTCCTCCAATAGGA   1552

BSNT_05020___   1543 AAAGTCCCTGGCACAA-----AAGA----AC-----ATTATCCTT-----   1573
                              |.||.||     ||||    ||     ||||  |||     
BSU25860___yq   1553 ---------GTCATAAAGGGGAAGATATGACGGATGATTA--CTTTGGAG   1591

BSNT_05020___   1574 -TTAATAAATAA   1584
                      ||||       
BSU25860___yq   1592 ATTAA-------   1596


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