Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03871 and BSU26620

See Amino acid alignment / Visit BSNT_03871 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:57
# Commandline: needle
#    -asequence dna-align/BSNT_03871___yrdR.1.22522.seq
#    -bsequence dna-align/BSU26620___yrdR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03871___yrdR-BSU26620___yrdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03871___yrdR-BSU26620___yrdR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03871___yrdR
# 2: BSU26620___yrdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 966
# Identity:     947/966 (98.0%)
# Similarity:   947/966 (98.0%)
# Gaps:           0/966 ( 0.0%)
# Score: 4659.0
# 
#
#=======================================

BSNT_03871___      1 ATGAAAAAAAGTCAATTATTCATTGGTGCCCTTACATGTTTAGTGGCAAG     50
                     |||||||||.||||||||||||||||||||||||||||||||||.|||||
BSU26620___yr      1 ATGAAAAAAGGTCAATTATTCATTGGTGCCCTTACATGTTTAGTAGCAAG     50

BSNT_03871___     51 TATGTCTTGGGGCGCGATGTTTCCAGTTGCAGATCATGCATTAGAATTTA    100
                     |||||||||||||||||||||||||||||||||||||||||||||||||.
BSU26620___yr     51 TATGTCTTGGGGCGCGATGTTTCCAGTTGCAGATCATGCATTAGAATTTG    100

BSNT_03871___    101 TTGATCCGTTTTATTTTTCATTTATTCGCTACGGTGTGGTAACAATTATG    150
                     |||||||||||||||||||||||||||||||||||||||||||.||||||
BSU26620___yr    101 TTGATCCGTTTTATTTTTCATTTATTCGCTACGGTGTGGTAACGATTATG    150

BSNT_03871___    151 TTAGTGATTTTATTATTAGTGAGAGAAGGAAAAAAATCATTTCATTTAGA    200
                     |||||||||||||||||.||||||||||||||.|||||||||||||||||
BSU26620___yr    151 TTAGTGATTTTATTATTGGTGAGAGAAGGAAAGAAATCATTTCATTTAGA    200

BSNT_03871___    201 GGGTAAAGCAAAATGGATCATTTTATTTGGGGTGATGGCGTTTACTGTAT    250
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
BSU26620___yr    201 GGGTAAAGCAAAATGGATCATTTTATTTGGGGTGATGGCGTTTACTATAT    250

BSNT_03871___    251 ACAATGTTCTTATTTTTTTAGGTCAAAGGTTGATGGGGAAGTCTGGAATT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26620___yr    251 ACAATGTTCTTATTTTTTTAGGTCAAAGGTTGATGGGGAAGTCTGGAATT    300

BSNT_03871___    301 ATGACAGCGTCCATTGCCGAGGCACTCATGCCGATGCTTTCAATTGTTAT    350
                     ||||||||.|||||||||||||||||||||||||||||||||||||||||
BSU26620___yr    301 ATGACAGCATCCATTGCCGAGGCACTCATGCCGATGCTTTCAATTGTTAT    350

BSNT_03871___    351 TCTATGGGGATATAAACATGTGAAACCTAAAAAATACACAATGATCAGTA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26620___yr    351 TCTATGGGGATATAAACATGTGAAACCTAAAAAATACACAATGATCAGTA    400

BSNT_03871___    401 TATTGATTGCCTTTTTGGGGGCTTCGATGGTCATAACCAAAGGTAATATA    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26620___yr    401 TATTGATTGCCTTTTTGGGGGCTTCGATGGTCATAACCAAAGGTAATATA    450

BSNT_03871___    451 AGTTTCTTTTTTTCATTAGGGGATCATCTATTCTCGCTACTCTTTATATT    500
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
BSU26620___yr    451 AGTTTCTTTTTTTCATTAGGGGATCATCTATTCTCGATACTCTTTATATT    500

BSNT_03871___    501 CATTGGTGTTTTAGGATGGGTTGTCTACACAATGGGGGGACAGTTATTCC    550
                     |||||||||||||||.|||||||||||||||||||||||||||.||||||
BSU26620___yr    501 CATTGGTGTTTTAGGGTGGGTTGTCTACACAATGGGGGGACAGATATTCC    550

BSNT_03871___    551 AAGAGTGGTCCACACTTCGTTATTCAACATTGACATGTTTATTCGGCACA    600
                     .|||||||||||||||||||||||||||.|||||||||||||||||||||
BSU26620___yr    551 GAGAGTGGTCCACACTTCGTTATTCAACTTTGACATGTTTATTCGGCACA    600

BSNT_03871___    601 GCTATAACAGGAATCATGACAGCTATACTTACCGCGCAAGGTTACGTGTC    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26620___yr    601 GCTATAACAGGAATCATGACAGCTATACTTACCGCGCAAGGTTACGTGTC    650

BSNT_03871___    651 GGTACCGAGTATTAAAGTGATTGCAGCAATTAAGTATGATTTTTTATTTA    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26620___yr    651 GGTACCGAGTATTAAAGTGATTGCAGCAATTAAGTATGATTTTTTATTTA    700

BSNT_03871___    701 TGATTACTTTACCAGGTATCATAGCCCTCCTTGGTTGGAACTATGGCATT    750
                     ||||||||||||||||||||||||||||||||.|||||||||||||||||
BSU26620___yr    701 TGATTACTTTACCAGGTATCATAGCCCTCCTTAGTTGGAACTATGGCATT    750

BSNT_03871___    751 AAAATCCTATCATCCATTAATGGGATTTTATTTATTAACTTTGTCCCCAT    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU26620___yr    751 AAAATCCTATCATCCATTAATGGGATTTTATTTATTAACTTTGTCCCCAT    800

BSNT_03871___    801 TACTACATTGTTAATCATGGTGATCAAAGGATATAACATAACTGCATTTG    850
                     |||||||||||||||||||||||||||||||||||||||||||||.||||
BSU26620___yr    801 TACTACATTGTTAATCATGGTGATCAAAGGATATAACATAACTGCTTTTG    850

BSNT_03871___    851 ATATAGTAGGAACACTGTTTGTCATTATTGTACTCATTTTAAATAACATA    900
                     ||||||||||||||||||||||||||||||.|||||||||||||||||||
BSU26620___yr    851 ATATAGTAGGAACACTGTTTGTCATTATTGGACTCATTTTAAATAACATA    900

BSNT_03871___    901 TATCAGCGTAAGGAAGATTATAAGCAGGTATTACAAAAAGAAAAAACACA    950
                     ||||||||||||||||||||||||||||||||.|||||||||||||||.|
BSU26620___yr    901 TATCAGCGTAAGGAAGATTATAAGCAGGTATTGCAAAAAGAAAAAACAAA    950

BSNT_03871___    951 TTTGACTATCAGTTAG    966
                     |||||||||||.||||
BSU26620___yr    951 TTTGACTATCACTTAG    966


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