Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04344 and BSU29820

See Amino acid alignment / Visit BSNT_04344 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_04344___ytpR.1.22522.seq
#    -bsequence dna-align/BSU29820___ytpR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04344___ytpR-BSU29820___ytpR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04344___ytpR-BSU29820___ytpR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04344___ytpR
# 2: BSU29820___ytpR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity:     603/606 (99.5%)
# Similarity:   603/606 (99.5%)
# Gaps:           0/606 ( 0.0%)
# Score: 3003.0
# 
#
#=======================================

BSNT_04344___      1 ATGAACGCTTTTTATAATAAAGAAGGTGTGGGAGACACGCTCCTGATCTC     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt      1 ATGAACGCTTTTTATAATAAAGAAGGTGTGGGAGACACGCTCCTGATCTC     50

BSNT_04344___     51 TCTTCAAGATGTGACACGCGAACAATTAGGCTATGAAAAACACGGCGACG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt     51 TCTTCAAGATGTGACACGCGAACAATTAGGCTATGAAAAACACGGCGACG    100

BSNT_04344___    101 TCGTCAAAATTTTCAATAACGAAACAAAAGAAACAACGGGCTTCAACATT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt    101 TCGTCAAAATTTTCAATAACGAAACAAAAGAAACAACGGGCTTCAACATT    150

BSNT_04344___    151 TTCAACGCGTCTTCTTACTTGACCATTGATGAAAACGGCCCTGTTGCGCT    200
                     |||||.||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt    151 TTCAATGCGTCTTCTTACTTGACCATTGATGAAAACGGCCCTGTTGCGCT    200

BSNT_04344___    201 CTCAGAAACATTCGTGCAAGATGTGAATGAGATTTTAAACAGAAACGGCG    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt    201 CTCAGAAACATTCGTGCAAGATGTGAATGAGATTTTAAACAGAAACGGCG    250

BSNT_04344___    251 TTGAAGAAACATTAGTCGTTGATTTATCTCCGAAGTTTGTTGTGGGGTAT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
BSU29820___yt    251 TTGAAGAAACATTAGTCGTTGATTTATCTCCGAAGTTTGTTGTGGGTTAT    300

BSNT_04344___    301 GTAGAATCAAAAGAAAAACATCCGAATGCGGATAAATTAAGCGTATGTAA    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt    301 GTAGAATCAAAAGAAAAACATCCGAATGCGGATAAATTAAGCGTATGTAA    350

BSNT_04344___    351 AGTCAACGTAGGAGAAGAAACGCTTCAGATCGTCTGCGGCGCGCCTAACG    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt    351 AGTCAACGTAGGAGAAGAAACGCTTCAGATCGTCTGCGGCGCGCCTAACG    400

BSNT_04344___    401 TTGACCAAGGCCAAAAAGTTGTCGTTGCCAAAGTCGGTGCTGTGATGCCT    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt    401 TTGACCAAGGCCAAAAAGTTGTCGTTGCCAAAGTCGGTGCTGTGATGCCT    450

BSNT_04344___    451 AGCGGACTTGTCATTAAGGATGCAGAGCTTCGCGGCGTTCCGTCAAGCGG    500
                     ||||||||||||||||||||||||||||||||.|||||||||||||||||
BSU29820___yt    451 AGCGGACTTGTCATTAAGGATGCAGAGCTTCGTGGCGTTCCGTCAAGCGG    500

BSNT_04344___    501 GATGATCTGCTCAGCGAAAGAGCTTGATTTGCCGGATGCCCCTGCTGAAA    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt    501 GATGATCTGCTCAGCGAAAGAGCTTGATTTGCCGGATGCCCCTGCTGAAA    550

BSNT_04344___    551 AAGGAATCCTTGTGTTAGAAGGAGACTATGAGGCGGGAGACGCATTTCAG    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU29820___yt    551 AAGGAATCCTTGTGTTAGAAGGAGACTATGAGGCGGGAGACGCATTTCAG    600

BSNT_04344___    601 TTTTAG    606
                     ||||||
BSU29820___yt    601 TTTTAG    606


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