Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05126 and BSU33890

See Amino acid alignment / Visit BSNT_05126 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_05126___yvbK.1.22522.seq
#    -bsequence dna-align/BSU33890___yvbK.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05126___yvbK-BSU33890___yvbK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05126___yvbK-BSU33890___yvbK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05126___yvbK
# 2: BSU33890___yvbK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 485
# Identity:     353/485 (72.8%)
# Similarity:   353/485 (72.8%)
# Gaps:          40/485 ( 8.2%)
# Score: 1285.0
# 
#
#=======================================

BSNT_05126___      1 ------ATGCAACACCTCACCATTCA------AAAAGCAACAAACTTTGA     38
                           ||||||.|.||||..|||.|      |.|||.||||||   |||
BSU33890___yv      1 ATGAATATGCAAAAGCTCAGGATTGAATTAGGAGAAGAAACAAA---TGA     47

BSNT_05126___     39 TCAACCGCTGTATGAGCTTCTGCTGCTCGCCGATCCGTCAAAAGAAATTG     88
                     ..||   .|.|||||.||..||||||||||||||||.||.|||||.||||
BSU33890___yv     48 CGAA---TTATATGATCTATTGCTGCTCGCCGATCCATCGAAAGACATTG     94

BSNT_05126___     89 TTGATGACTA-CTTGGTCAGA--GGAGAATGCTACACAGGTTATATATCA    135
                     |.|||||.|| ||||   |||  ||||||||.|||||||.||        
BSU33890___yv     95 TAGATGAATATCTTG---AGAGGGGAGAATGTTACACAGCTT--------    133

BSNT_05126___    136 GG--CG--AATTAGCT----GGTGTATACGTGATCATCACAACTAGGCCA    177
                     ||  ||  .||.||||    ||.||.||.||..|..|.|.|||.|||||.
BSU33890___yv    134 GGGCCGGTGATGAGCTTGCAGGGGTTTATGTATTGCTAAAAACAAGGCCG    183

BSNT_05126___    178 CAAACGGTAGAAATCGTTAACATCGCAGTAAAACAAACAATGCAAAAACA    227
                     |||||.||.|||||.||.||.||.||.||||||.||.|..|.||.||..|
BSU33890___yv    184 CAAACAGTTGAAATTGTAAATATTGCGGTAAAAGAATCTCTTCAGAAGAA    233

BSNT_05126___    228 GGGCATTGGCAAGCTTCTTATCCTCGACGCCATTGAAAAAGCGAAACACA    277
                     .|||.|||||||.|..|||.|.||.||||||||.|||||||||||..|..
BSU33890___yv    234 AGGCTTTGGCAAACAGCTTGTACTTGACGCCATCGAAAAAGCGAAGAAGC    283

BSNT_05126___    278 TGGGAGCAAAGGTGATTGAAATAGGTACTGGAAATTCAAGCATCCATCAA    327
                     ||||.||..|...|||||||||.||.||.||.|||||.|||||.|||||.
BSU33890___yv    284 TGGGGGCGGACACGATTGAAATCGGAACGGGGAATTCGAGCATTCATCAG    333

BSNT_05126___    328 TTGTCTCTATATCAAAAATGCGGATTTCGCCTTCAAGCGATCGACCATGA    377
                     .|.||.||.|||||||||||||||||.|||.||||.|||||||||||.||
BSU33890___yv    334 CTTTCCCTCTATCAAAAATGCGGATTCCGCATTCAGGCGATCGACCACGA    383

BSNT_05126___    378 TTTTTTTATCAGACACTACGACGAGGAGATTTTTGAAAACGGCATTCAAT    427
                     |||.|||.|||||||.||.||.|||||.||||||||||||||.|||||||
BSU33890___yv    384 TTTCTTTCTCAGACATTATGATGAGGACATTTTTGAAAACGGGATTCAAT    433

BSNT_05126___    428 GCCGTGATATGGTGAGGCTTTATTTGGATCTCTGA    462
                     ||||.||||||||.|||||||||||||||||||||
BSU33890___yv    434 GCCGCGATATGGTAAGGCTTTATTTGGATCTCTGA    468


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