Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05397 and BSU35520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_05397___yvhJ.1.22522.seq
# -bsequence dna-align/BSU35520___yvhJ.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05397___yvhJ-BSU35520___yvhJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05397___yvhJ-BSU35520___yvhJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05397___yvhJ
# 2: BSU35520___yvhJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1229
# Identity: 690/1229 (56.1%)
# Similarity: 690/1229 (56.1%)
# Gaps: 289/1229 (23.5%)
# Score: 2020.0
#
#
#=======================================
BSNT_05397___ 1 ATGCCAGAACGAGTTAAGGTTCGTGT---AAAGAAAAAAAAAAATAAACG 47
|||.|.|||||.||||..||.||||| |||.||.|||||.|..|||||
BSU35520___yv 1 ATGGCTGAACGCGTTAGAGTGCGTGTGCGAAAAAAGAAAAAGAGCAAACG 50
BSNT_05397___ 48 AA--AAATTATTTTAAAGCGTATA---TTATTGCT---CTTTTTCCTATT 89
.| ||| ||||||||..|.||| ||||||.| |.||...||||
BSU35520___yv 51 TAGGAAA--ATTTTAAAAAGAATAATGTTATTGTTCGCCCTTGCACTAT- 97
BSNT_05397___ 90 TTCTATAGTATTCGCAGGAATAATTGGATATAAAGTATATAAAACGCTTC 139
|.|||.|.|.|||..|....||.||||||.|.||||||||..||.
BSU35520___yv 98 -----TGGTAGTTGTAGGGCTTGGCGGGTATAAACTTTATAAAACCATTA 142
BSNT_05397___ 140 AAGCAGCTGATAGTTCCTATAAAGAAT--TA-GAT---------CGTGGT 177
|.||.||.||| |||| || ||| ||.||
BSU35520___yv 143 ACGCTGCGGAT------------GAATCGTACGATGCCCTATCCCGCGG- 179
BSNT_05397___ 178 GAA-AAGTCGAAAT-TACGCAAAGAAGTAGTTGATCTTAAGAAAAAACAA 225
||| ||.|| |||| |.|||||.|||||.||.||..|.||||||| ||
BSU35520___yv 180 GAATAAATC-AAATCTTCGCAACGAAGTTGTAGACATGAAGAAAA---AA 225
BSNT_05397___ 226 CCTTTTTCTGTACTTTTGTTA--GGAGTCGAAGACTATGCAAC---AGG- 269
||.||||| ||.|||..||| |||.|.||.||.||.||.|| |||
BSU35520___yv 226 CCATTTTC--TATTTTATTTATGGGAATAGAGGATTACGCGACTAAAGGA 273
BSNT_05397___ 270 CGGAAAAGGAGGAAGAACCGATTCTATTATTGTCGCTACTATCAATCCTA 319
| |||| |||.|||.|.||.|||.|||||||.|.|||..|..||||.|
BSU35520___yv 274 C--AAAA--AGGGAGATCAGACTCTCTTATTGTTGTTACCCTGGATCCCA 319
BSNT_05397___ 320 AACAAAAGACCATGAAGTTACTGAGCATTCCTCGAGATACAAGAGTTGAA 369
||.|.||.||||||||..|.|||||||||||.||.||.|||.|.||..||
BSU35520___yv 320 AAAATAAAACCATGAAAATGCTGAGCATTCCGCGTGACACACGTGTGCAA 369
BSNT_05397___ 370 ATATCTGGTGATACTTCTGGGACAAAAACGAGAATTAATTCTGCATATGG 419
.||.|||||||.||..|.||.|..||.||||..||.|||.|.||.||..|
BSU35520___yv 370 TTAGCTGGTGACACAACGGGAAGCAAGACGAAGATCAATGCCGCTTACAG 419
BSNT_05397___ 420 GAAAGGCGG---AGCTCAAACAACTGTTGAAACGGTTGAAAAGCTCTTAA 466
.|||||||| ||.|.||||| ||||||||.||||||||..||||..
BSU35520___yv 420 CAAAGGCGGTAAAGATGAAACA---GTTGAAACTGTTGAAAACTTCTTGC 466
BSNT_05397___ 467 ATATACCAATTGATTACTATGCTACTGTGGATTTTAAAGGCTTCAAAAAA 516
|.||.||.||.|||.|.||||..||.||.||||||.|.||.||.|||.|.
BSU35520___yv 467 AAATCCCGATCGATAAATATGTCACAGTTGATTTTGACGGATTTAAAGAT 516
BSNT_05397___ 517 ACAATTGATGAAGTTGGTGGAGTTGATGTTGAGGTCCCCTTTGATTTTAA 566
...|||.|||||||.||.||..||||||||||.||.||.||.|||||..|
BSU35520___yv 517 GTGATTAATGAAGTCGGCGGTATTGATGTTGACGTGCCTTTCGATTTCGA 566
BSNT_05397___ 567 TGAGAAAAGTGA--TACATCAAAATCTAAAAAATTCTATTTTCAAAAAGG 614
|||.|||||||| ||.| |.|||.|.||...||| ||.||..|||||||
BSU35520___yv 567 TGAAAAAAGTGATGTAGA-CGAAAGCAAACGGATT-TACTTCAAAAAAGG 614
BSNT_05397___ 615 GAATATGCATCTAAATGGGGAAGAGGCTCTT-GCCTATGCACGGATGAGA 663
..|.||||||.|.||.||.|||||.|| ||| ||.|||||.|||||||||
BSU35520___yv 615 CGAGATGCATTTGAACGGCGAAGAAGC-CTTAGCATATGCCCGGATGAGA 663
BSNT_05397___ 664 AAACAAGATCCACGGGGTGACTTCGGGCGTAATGATAGACAAAAACAAAT 713
|||||.|||..|||.||.|||||.||.||||||||.||||||||||||||
BSU35520___yv 664 AAACAGGATAAACGCGGAGACTTTGGCCGTAATGACAGACAAAAACAAAT 713
BSNT_05397___ 714 TTTGATGGCCATGTTAGA-------TCAAGTCTCAA--AACCTTCTAATC 754
.||.|..||..||.|.|| |||||| .||| ||| .
BSU35520___yv 714 CTTAAACGCGCTGATTGACCGCATGTCAAGT-GCAAGCAAC--------A 754
BSNT_05397___ 755 TTGCAAAAATTGATACCCTAGCAGATCAAGTAAGTGATAACATAACAACA 804
||||.||||||||||...|.|||||..|||..||.||.|||.|...|||.
BSU35520___yv 755 TTGCTAAAATTGATAAAATCGCAGAAAAAGCCAGCGAAAACGTTGAAACC 804
BSNT_05397___ 805 AATTTAAGGATTACCCAAGTCCTAGCACTTCAACAAATTTTTAGCGGTTT 854
|||.|..|.|||||..|||...||||.|||||.||.||||..|||||.||
BSU35520___yv 805 AATATTCGCATTACTGAAGGTTTAGCGCTTCAGCAGATTTACAGCGGCTT 854
BSNT_05397___ 855 TAAAGGTAACGATGTTGAAACATTAACTCTAAAAGGCTCAGATTTATATA 904
||...|.||..|..|.||.|||||.|...|.|.|||.||.|||||.|||.
BSU35520___yv 855 TACCAGCAAAAAAATCGACACATTGAGCATTACAGGTTCTGATTTGTATT 904
BSNT_05397___ 905 TCGG------AAATAAGTACTTCTTTCAACCTGATGAT---------GAA 939
|.|| .||.|..||.|.||||.|||||||||.| ||.
BSU35520___yv 905 TAGGGCCTAACAACACATATTACTTTGAACCTGATGCTACAAATCTCGAG 954
BSNT_05397___ 940 GAATTAACAAAA---GTTCAAGAAGAACTTTATAACTTTTTGTAC-CCTG 985
.||.|.|.|||| .|||||||..| ||||.| ||.||| ||||
BSU35520___yv 955 AAAGTCAGAAAAACGCTTCAAGAGCA--TTTAGA-----TTATACTCCTG 997
BSNT_05397___ 986 ATA-AATAA----------------------------------------- 993
||| ||..|
BSU35520___yv 998 ATACAAGCACTGGCACTTCCGGTACCGAAGACGGGACTGACAGCTCAAGC 1047
BSNT_05397___ 993 -------------------------------------------------- 993
BSU35520___yv 1048 AGTTCTGGCAGCACTGGCAGCACTGGCACAACAACTGACGGGACGACGAA 1097
BSNT_05397___ 993 -------------------------------------------------- 993
BSU35520___yv 1098 CGGAAGCAGCTATTCGAATGACAGCAGCACAAGCTCAAACAACAGTACAA 1147
BSNT_05397___ 993 ----------------------------- 993
BSU35520___yv 1148 CGAATTCAACAACTGATTCATCCTATTAA 1176
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