Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05427 and BSU35620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_05427___lytC.1.22522.seq
# -bsequence dna-align/BSU35620___lytC.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05427___lytC-BSU35620___lytC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05427___lytC-BSU35620___lytC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05427___lytC
# 2: BSU35620___lytC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1679
# Identity: 943/1679 (56.2%)
# Similarity: 943/1679 (56.2%)
# Gaps: 406/1679 (24.2%)
# Score: 2236.5
#
#
#=======================================
BSNT_05427___ 1 ---------------------------ATGTTGTTGTTAGGG-----TTC 18
||| ||||.|..||| |.|
BSU35620___ly 1 TTGCGTTCTTATATAAAAGTCCTAACAATG-TGTTTTCTGGGGCTCATAC 49
BSNT_05427___ 19 TTTTTGTTTATGCCTAATGTATTTGCGGCCAACTCTGTCACAAGATTAGA 68
|||||| ||||.|..|..||.||.|..|||||.||.|.||||.|.|
BSU35620___ly 50 TTTTTG----TGCCAACAGCTTTGGCCGATAACTCAGTGAAAAGAGTTG- 94
BSNT_05427___ 69 CGGTGTA--AATCGTTATGAGGTTGCGGTGAACGTTTCCAAGCAGGGATG 116
||.|.| |||.|.||.|....|||.||..|..|.||.||||| .|||
BSU35620___ly 95 -GGGGAAGCAATAGATACGGCACTGCTGTACAAATATCAAAGCA--AATG 141
BSNT_05427___ 117 --GTCAAGTGCAAGCA---CTGTCATTGTTGCAAATGGAAAGGCATATGC 161
.||||..|||||.| ||||.||||||| .|||.|...|.|||||
BSU35620___ly 142 TATTCAACAGCAAGTACAGCTGTAATTGTTG---GTGGGAGTTCCTATGC 188
BSNT_05427___ 162 AGACGTCCTTTCAGCAACTCCATTTGCCTATCGAAACAACGCGCCTGTTC 211
|||.|...||||||||.|.||..||||.||.|..||.||.|||||..|.|
BSU35620___ly 189 AGATGCTATTTCAGCAGCACCTCTTGCTTACCAGAAGAATGCGCCATTGC 238
BSNT_05427___ 212 T----ATTAA--CTG--AAGCGTCTAAATTACCAACGGCGACAAAAAACC 253
| |.||| ||| ||||.|..|.||.| |||| |||||.
BSU35620___ly 239 TTTACACTAATTCTGATAAGCTTTCATATGA--AACG-------AAAACA 279
BSNT_05427___ 254 GAATT---AGTCAGTTAAAACCTAGCAAAGTG-----ATCGTAATCGGCG 295
..||| || ||.|..|..||| |||.|| ||.||| ||||
BSU35620___ly 280 AGATTGAAAG--AGATGCAGACTA--AAAATGTAATTATTGTA---GGCG 322
BSNT_05427___ 296 GAA------CCGTCAGCGTTC----AAAACGGCGTCGTAAACGAGATTAA 335
||| |.|| ||| ||.||.|| .|||.||||| |
BSU35620___ly 323 GAACACCTGCTGT-----TTCTTCTAACACTGC-----TAACCAGATT-A 361
BSNT_05427___ 336 AAAGCTTGGTGTGTCAT--CTGTCGAACGCATCGGCGG-AGCGAATCGCT 382
|||||||||.| || .|.|..||||.||.|..|| ||| ||.||.|
BSU35620___ly 362 AAAGCTTGGGG----ATAAGTATTAAACGAATTGCAGGAAGC-AACCGTT 406
BSNT_05427___ 383 ACGAGGTTGCGGCGAATATTGCAAATAAGTTGCCGAAA------------ 420
|.|| |.|||| |||| ..|.||.|.|||
BSU35620___ly 407 ATGA---TACGGC------TGCA---CGGGTGGCAAAAGCGATGGGTGCG 444
BSNT_05427___ 421 AATTCAAAAGCTGTCATCGCAAACGGAACGGC-----GTATGCTGACAGC 465
|.||||||||||||.|| ...||||||| .|||||.||| ||
BSU35620___ly 445 ACTTCAAAAGCTGTTAT-----TTTGAACGGCTTCTTATATGCAGAC-GC 488
BSNT_05427___ 466 -CTAGCGATCGGCGCATATGCCGCAAGAAACGGCATTCCGATTCTTTTAA 514
|..||..||..|.|.|||||.||.|.||||||...|||.||||||||.|
BSU35620___ly 489 TCCGGCCGTCATCCCTTATGCAGCGAAAAACGGGTATCCAATTCTTTTTA 538
BSNT_05427___ 515 CATCGTCAAATTCCATACCGACAGCGACAAAAAATGCAA---------TG 555
||||| |.| |||.|.|.|||.|.|||.| ||
BSU35620___ly 539 ------CAAAT---AAA---ACATCTATAAATAGTGCGACTACGTCTGTG 576
BSNT_05427___ 556 --AAGAGCAAAGGAACAACATCG---ACCATCGTCGTAGGCGG----TGA 596
||.||..|||| .||..||| |||.|.||.|||||.|| .||
BSU35620___ly 577 ATAAAAGATAAGG--GAATTTCGAGTACCGTTGTTGTAGGAGGCACTGGA 624
BSNT_05427___ 597 AGTCAGCATCTCCAGCA----GCGTATACAAACAGCTTGCTTCTCCGACG 642
||| || ||||| | ||||||||..||.|..|||||||.||.
BSU35620___ly 625 AGT----AT---CAGCAATACG-GTATACAACAAGTTACCTTCTCCTACA 666
BSNT_05427___ 643 CGGATCGGCGG--CAGCAACCGCTATGAAGTCGCGGCAAATGTCGT-CAA 689
.|.||..|||| || |||.|.|||||..|.||.||||||.|||| |||
BSU35620___ly 667 AGAATTAGCGGTTCA--AACAGATATGAGCTTGCTGCAAATATCGTACAA 714
BSNT_05427___ 690 GAAATATTATTCTTCTGCGAAGAATGCAATTATCAGCAACGGC----TAT 735
.|| ||| ||| ||||||.||| || |||
BSU35620___ly 715 AAA--------CTT--------AAT----TTATCAACAA--GCACCGTAT 742
BSNT_05427___ 736 GCGTATGCCGATGGATTAA------------------CAGGATCTGTTCT 767
..|||.| |.|||||||.| |||||.||...||
BSU35620___ly 743 ATGTAAG-CAATGGATTCAGCTACCCTGACTCTATTGCAGGAGCTACACT 791
BSNT_05427___ 768 GGCGGCTAAGCAAAACCGTCCGATGATGTTCACGAATGCATCGT----CT 813
|||.||||||.|.||.|...|..|.||..|.||.|||| || .|
BSU35620___ly 792 GGCAGCTAAGAAGAAGCAATCTCTTATTCTTACAAATG----GTGAAAAT 837
BSNT_05427___ 814 TTGCCGACACCGACAAGAG------AAGTGATCGGTTCCAAAAACATGAC 857
|| |.|.|||.||| ||.|.||.||....|||||||||.|
BSU35620___ly 838 TT------ATCTACAGGAGCCCGTAAAATTATTGGAAGTAAAAACATGTC 881
BSNT_05427___ 858 GACGTTTACCGTGCTTGGCGGAACGGTTTCTCTTCAATCCAATGTCGT-- 905
.|..|||| ||.||..||||| .||.||| ||.|||
BSU35620___ly 882 AAACTTTA---TGATTATCGGAA----------ACACTCC--TGCCGTAA 916
BSNT_05427___ 906 GTCA--------------CAGCTGAAAAATCCGATCGTCGGCAAAAAAAT 941
| || |||||.||.|||||..|.||.||..|||.|||
BSU35620___ly 917 G-CACAAAGGTTGCTAATCAGCTAAAGAATCCAGTTGTAGGTGAAACAAT 965
BSNT_05427___ 942 CTTCATTGATGCAGGGCACGGAGGTACAGA--CAGCGGTGCTATCGGCAA 989
|||.||||||.|.||.|||||.|.|..||| || ||.||.||||||||
BSU35620___ly 966 CTTTATTGATCCGGGTCACGGTGATCAAGATTCA--GGAGCAATCGGCAA 1013
BSNT_05427___ 990 CAGTCTATATGAAAAAAGTGTGAACCTTGATGTTGCAAAATTAATTAATA 1039
..|.||...|||.|||...||.|||||||||.|.||.|||..|.|.||||
BSU35620___ly 1014 TGGACTCCTTGAGAAAGAAGTCAACCTTGATATAGCGAAAAGAGTCAATA 1063
BSNT_05427___ 1040 CGAAATTA------TCAAACGGCGGTGCTCTGCCAATAATGGCGAGGACG 1083
|.||..|| ||| ||||||||.|||.||.||.|.||..|.
BSU35620___ly 1064 CAAAGCTAAATGCTTCA------GGTGCTCTTCCAGTACTGTCAAGATCT 1107
BSNT_05427___ 1084 AACGACACTTACCTGACGCTTGCACA-GCGCGTGTCA--AAAGCA----- 1125
||.||.|||| .|.|..||| .||| |.|.|.||.| ||||||
BSU35620___ly 1108 AATGATACTT--TTTATTCTT-TACAGGAGAGAGTAAATAAAGCAGCTTC 1154
BSNT_05427___ 1126 --CAGTCAAATAAAGCAGATTTGTTTGTCAGCATCCATGCAAACTCGGCA 1173
|| .||||||||||.|||.||||.||.||||||||
BSU35620___ly 1155 TGCA-------CAAGCAGATTTATTTCTCAGTATACATGCAAA------- 1190
BSNT_05427___ 1174 ACGCCTGCT-------GCT--TC------CGGAACAGAAACTTACTATTA 1208
|||| ||| || .||||..||.||.|||||..|
BSU35620___ly 1191 -----TGCTAATGATAGCTCATCACCAAATGGAAGTGAGACGTACTACGA 1235
BSNT_05427___ 1209 TACGACGTATGAATCAGCCAATAGTAAAAGGTTGGC--AACCGAGATTCA 1256
|||.||.|||.||.|.||.|||||.||.||..|||| ||| |.|||||
BSU35620___ly 1236 TACAACATATCAAGCTGCAAATAGCAAGAGACTGGCTGAAC--AAATTCA 1283
BSNT_05427___ 1257 ---AAATCGTCTCTATGTAGC-GCTGAAT------ACAACAAACCGTGGT 1296
||| || |||| ||| ||| ||.|.|.||||.||.
BSU35620___ly 1284 ACCAAA--GT-------TAGCGGCT-AATCTTGGAACGAGAGACCGGGGA 1323
BSNT_05427___ 1297 GTGAAAATCGGCAAC-TTCCATGTCATCAGGGAATCCAAAATGCCAAGCT 1345
|| ||||.|.||..| |||.||||.||.|...|.||.||||||||.|| |
BSU35620___ly 1324 GT-AAAAACAGCTGCTTTCTATGTTATTAAATATTCTAAAATGCCGAG-T 1371
BSNT_05427___ 1346 GCCTT-GTTGAACTTGCGTTTATCACCAAT--ATCAACGATGCGGCTAAG 1392
|..|| ||||||..|||.||||||||.||| |||| ||||| |||
BSU35620___ly 1372 GTTTTAGTTGAAACTGCCTTTATCACTAATGCATCA--GATGC----AAG 1415
BSNT_05427___ 1393 CTCAA---AAGCTCAA----TTTACAAAGAAAAAGGCGCTAAAGCGATTT 1435
|.|| ||| ||| ||||.|||||.||||..||..||||.|||.
BSU35620___ly 1416 -TAAATTGAAG--CAAGCGGTTTATAAAGATAAAGCTGCACAAGCTATTC 1462
BSNT_05427___ 1436 ACGACGGAATCGTTGCTTACTA---TTAA 1461
|.|||||.|..||..||||.|| .|||
BSU35620___ly 1463 ATGACGGCACAGTATCTTATTACAGATAA 1491
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