Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05729 and BSU37460

See Amino acid alignment / Visit BSNT_05729 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:52
# Commandline: needle
#    -asequence dna-align/BSNT_05729___rapF.1.22522.seq
#    -bsequence dna-align/BSU37460___rapF.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05729___rapF-BSU37460___rapF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05729___rapF-BSU37460___rapF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05729___rapF
# 2: BSU37460___rapF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1146
# Identity:    1145/1146 (99.9%)
# Similarity:  1145/1146 (99.9%)
# Gaps:           0/1146 ( 0.0%)
# Score: 5721.0
# 
#
#=======================================

BSNT_05729___      1 GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATG     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra      1 GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATG     50

BSNT_05729___     51 GTATATGTACATACGCCGATTCAGCATACCCGATGCAGAATATTTGCGAC    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra     51 GTATATGTACATACGCCGATTCAGCATACCCGATGCAGAATATTTGCGAC    100

BSNT_05729___    101 GAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCAT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    101 GAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCAT    150

BSNT_05729___    151 TTGTACTATTCACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCT    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    151 TTGTACTATTCACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCT    200

BSNT_05729___    201 TGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGACTGTCTGATC    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    201 TGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGACTGTCTGATC    250

BSNT_05729___    251 TGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAG    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    251 TGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAG    300

BSNT_05729___    301 TACTATTTTAACTTCTTCAGAGGCATGTACGAGCTGGACCAGCGGGAATA    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    301 TACTATTTTAACTTCTTCAGAGGCATGTACGAGCTGGACCAGCGGGAATA    350

BSNT_05729___    351 TCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    351 TCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG    400

BSNT_05729___    401 TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCT    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    401 TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCT    450

BSNT_05729___    451 TATTACTATATGAAACAAACGTATTTTTCAATGGACTATGCACGGCAAGC    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    451 TATTACTATATGAAACAAACGTATTTTTCAATGGACTATGCACGGCAAGC    500

BSNT_05729___    501 ATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGT    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    501 ATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGT    550

BSNT_05729___    551 GTCATTCTTTATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGAT    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    551 GTCATTCTTTATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGAT    600

BSNT_05729___    601 GCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAGCTGAAAAGCA    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    601 GCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAGCTGAAAAGCA    650

BSNT_05729___    651 GCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACA    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    651 GCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACA    700

BSNT_05729___    701 GCCAAAGCCAATATGAGGATGCCATACCTTATTTCAAAAGAGCAATAGCT    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    701 GCCAAAGCCAATATGAGGATGCCATACCTTATTTCAAAAGAGCAATAGCT    750

BSNT_05729___    751 GTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    751 GTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT    800

BSNT_05729___    801 AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAAT    850
                     |||||||||||||||||||||||||||||||||.||||||||||||||||
BSU37460___ra    801 AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAAT    850

BSNT_05729___    851 ATCATAGTAAGGGAATGGCTTATTCACAAAAGGCCGGAGATGTAATATAT    900
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    851 ATCATAGTAAGGGAATGGCTTATTCACAAAAGGCCGGAGATGTAATATAT    900

BSNT_05729___    901 TTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGA    950
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    901 TTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGA    950

BSNT_05729___    951 AGAAGCAATTCAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATG   1000
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra    951 AGAAGCAATTCAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATG   1000

BSNT_05729___   1001 CTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTATCATGAACGT   1050
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra   1001 CTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTATCATGAACGT   1050

BSNT_05729___   1051 AAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAG   1100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra   1051 AAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAG   1100

BSNT_05729___   1101 GCAACTTATTCAAGGAGGAGTGAGTTTGTATGAAATTGAAGTCTAA   1146
                     ||||||||||||||||||||||||||||||||||||||||||||||
BSU37460___ra   1101 GCAACTTATTCAAGGAGGAGTGAGTTTGTATGAAATTGAAGTCTAA   1146


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