Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05990 and BSU39139

See Amino acid alignment / Visit BSNT_05990 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_05990.1.22522.seq
#    -bsequence dna-align/BSU39139___yxzJ.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05990-BSU39139___yxzJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05990-BSU39139___yxzJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05990
# 2: BSU39139___yxzJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 351
# Identity:     127/351 (36.2%)
# Similarity:   127/351 (36.2%)
# Gaps:         219/351 (62.4%)
# Score: 615.0
# 
#
#=======================================

BSNT_05990         1 TTGAATATCACACAATACGAGAAATTGAAAAAGCATCTTTCTGATGCGGA     50
                     ||||||||||||||||||||||||||||||.|||||||||||||||.|||
BSU39139___yx      1 TTGAATATCACACAATACGAGAAATTGAAACAGCATCTTTCTGATGAGGA     50

BSNT_05990        51 TACAGGTCCATTTACATTAAACGAGTTTTCGTTCTATATGAAAGAAGATG    100
                     ||||||||||||||||||||||||||||||.|||||||||||||||||||
BSU39139___yx     51 TACAGGTCCATTTACATTAAACGAGTTTTCTTTCTATATGAAAGAAGATG    100

BSNT_05990       101 ATCGTTATATACATATTCCTGTGTTTGAATTAAAACTATCAGCTCAAACC    150
                     ||||||||||.|||||||||||||||||||.|                  
BSU39139___yx    101 ATCGTTATATTCATATTCCTGTGTTTGAATGA------------------    132

BSNT_05990       151 TGTGACATTCATTTACGGTTTGAAGACGTTAGTGCATCAAAGCTGGATGA    200
                                                                       
BSU39139___yx    132 --------------------------------------------------    132

BSNT_05990       201 TCTTGAATCCATCGATTCTGTTGCATTGGAGATTGTACCGACTGACGATC    250
                                                                       
BSU39139___yx    132 --------------------------------------------------    132

BSNT_05990       251 AATGGGAAAGACTCCGTTATTATGTGTATGACGAAGAAAACCAAATAAGC    300
                                                                       
BSU39139___yx    132 --------------------------------------------------    132

BSNT_05990       301 TTCTATTGCGGAGGTTGGGATGTGATCAAGTGTGACAAGAAGTCACACTA    350
                                                                       
BSU39139___yx    132 --------------------------------------------------    132

BSNT_05990       351 A    351
                      
BSU39139___yx    132 -    132


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