Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06029 and BSU39300
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:33
# Commandline: needle
# -asequence dna-align/BSNT_06029___yxiD.1.22522.seq
# -bsequence dna-align/BSU39300___yxiD.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06029___yxiD-BSU39300___yxiD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06029___yxiD-BSU39300___yxiD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06029___yxiD
# 2: BSU39300___yxiD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1765
# Identity: 1249/1765 (70.8%)
# Similarity: 1249/1765 (70.8%)
# Gaps: 410/1765 (23.2%)
# Score: 5296.0
#
#
#=======================================
BSNT_06029___ 0 -------------------------------------------------- 0
BSU39300___yx 1 TTGAAAACATTAGATGTCCACGCTCTTCACGAGGGCATTCAGCATACGAT 50
BSNT_06029___ 0 -------------------------------------------------- 0
BSU39300___yx 51 TGAGAAACTGGACAAGCAAAAACAACAGCTGGAGAAGCTGGAAAAAAGCG 100
BSNT_06029___ 0 -------------------------------------------------- 0
BSU39300___yx 101 TTGAGCATCTGGCAGGCATGAAGGATGCGCTGAAAGGAAAAGGCGGAGAT 150
BSNT_06029___ 0 -------------------------------------------------- 0
BSU39300___yx 151 GCCATCCGGACCTTTTACGAGGAGTGCCACAAGCCTTTTCTCCTTTTCTT 200
BSNT_06029___ 1 ----ATGTTTATCGACGAATACAAAAAAGTGCTGAAACAAACCCAGCATG 46
||.|||||||||||||||||||||||||||||||||||.|||||||
BSU39300___yx 201 TGGCATATTTATCGACGAATACAAAAAAGTGCTGAAACAAACACAGCATG 250
BSNT_06029___ 47 CGATTTCCTCAGTAGAATCTGACTCCCACGGCATGATCGCAGAGGCTTTT 96
||||||||||.|||||||||.|||||||||||||||||||||||||||||
BSU39300___yx 251 CGATTTCCTCTGTAGAATCTAACTCCCACGGCATGATCGCAGAGGCTTTT 300
BSNT_06029___ 97 CTCTCACACGATGCGAGACATGGGGTCAAGCATGCACGAGAAGTGACAGA 146
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU39300___yx 301 CTCTCACACGATGCGAGACATGGGGTCAAGCATGCACGAGAAGTGACAGA 350
BSNT_06029___ 147 GCAGCTCACTGACGCAGTGAATCGCCAGACATCAGCCATCGGCCACATCG 196
||||||||||||||||||.||||||||||||||||||||.|..|||||||
BSU39300___yx 351 GCAGCTCACTGACGCAGTCAATCGCCAGACATCAGCCATAGATCACATCG 400
BSNT_06029___ 197 TCAGCTTGCCGGCAGTCAATGATACCTTTTTCCGAATGGAAACAGAACAG 246
|||||.|||||.|||||||||||.|||||||.||.|||||||||||||||
BSU39300___yx 401 TCAGCCTGCCGACAGTCAATGATTCCTTTTTTCGGATGGAAACAGAACAG 450
BSNT_06029___ 247 GCTGAGCGACTGATTACAGACACCCTGCATAAGCTCTTTCAATTTGACGG 296
||||||||.||||||.|||||||||||.||||||||||||||||||||||
BSU39300___yx 451 GCTGAGCGGCTGATTTCAGACACCCTGAATAAGCTCTTTCAATTTGACGG 500
BSNT_06029___ 297 CCAGCAAACCCAAGCACTAGAA---GCAAAATCAGATTTTCAAACGATGA 343
|||||||||||||||||||||| |||||||||||||||||||||||||
BSU39300___yx 501 CCAGCAAACCCAAGCACTAGAAGCCGCAAAATCAGATTTTCAAACGATGA 550
BSNT_06029___ 344 AAAAATACATTGATCAGCTCGAAACCATGTACACTGGGCCGAAAATTGAA 393
||||||||||||||||||||||||||||||||||.||.||||||||||||
BSU39300___yx 551 AAAAATACATTGATCAGCTCGAAACCATGTACACCGGCCCGAAAATTGAA 600
BSNT_06029___ 394 ATCACAGGCTACAAAAGCGGCTCCATCCTGAAATCACAGGAACAAGAAAA 443
||||||||||||||||||||||||||||||||||||||||||.|||||||
BSU39300___yx 601 ATCACAGGCTACAAAAGCGGCTCCATCCTGAAATCACAGGAAGAAGAAAA 650
BSNT_06029___ 444 CATCAACCAAACCTTCGGCGCGATTAACCCGCAAATGAAGCAGCCGGATG 493
|||||||||||.|||||||||||||||||||||||||||||||.||||||
BSU39300___yx 651 CATCAACCAAATCTTCGGCGCGATTAACCCGCAAATGAAGCAGGCGGATG 700
BSNT_06029___ 494 ATTCACCGATGGAGATGATGCTGAAGAAACTAGCCGAGAATGAAAAGTCT 543
|||||||||||||||||||||||||||||.||||||||||||||||||||
BSU39300___yx 701 ATTCACCGATGGAGATGATGCTGAAGAAATTAGCCGAGAATGAAAAGTCT 750
BSNT_06029___ 544 AAAGTGGATTCAGTTGTCAAAACGGGTCATTCTAAAAAGGTAAGTAAAAA 593
|||||||||||||||||||||||||||.||||||||||||||||||||||
BSU39300___yx 751 AAAGTGGATTCAGTTGTCAAAACGGGTGATTCTAAAAAGGTAAGTAAAAA 800
BSNT_06029___ 594 TATCATCGTTATCAATGGAAAAGTGTATAATACGAGTGAACATAGAGAAC 643
||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU39300___yx 801 TATCATCGTTATCAATGGTAAAGTGTATAATACGAGTGAACATAGAGAAC 850
BSNT_06029___ 644 ATATAAAAACTGATTTCTCAAATGCAGAGGTTAAGCAAGTTGTTTATAAT 693
||||||||||||||||||||||||||||||||||||||||.|||||||||
BSU39300___yx 851 ATATAAAAACTGATTTCTCAAATGCAGAGGTTAAGCAAGTCGTTTATAAT 900
BSNT_06029___ 694 GATACACTTTACAATGTATACATATCTGGTAATGACATGAAGCTTGAACC 743
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU39300___yx 901 GATACACTTTACAATGTATACATATCTGGTAATGACATGAAGCTTGAACC 950
BSNT_06029___ 744 TGTCGTCTCGCTTTCGGACATTAAAGTGGATGAGAATGGATATGTGAAAA 793
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU39300___yx 951 TGTCGTCTCGCTTTCGGACATTAAAGTGGATGAGAATGGATATGTGAAAA 1000
BSNT_06029___ 794 TTTTAGAGGCAGCTGTAGAACTTACCGGCGTGTATGATCTATTTAAAGCA 843
||||||||.|.|||||||||||||||||||||||||||||||||||||||
BSU39300___yx 1001 TTTTAGAGACGGCTGTAGAACTTACCGGCGTGTATGATCTATTTAAAGCA 1050
BSNT_06029___ 844 GCCACGGGCAGAGATCCGGTATCAGGAGAAAAAGTCACAGGGAAAGACCG 893
||||||||||||||||||||||||||.|||||||||||||||||||||||
BSU39300___yx 1051 GCCACGGGCAGAGATCCGGTATCAGGCGAAAAAGTCACAGGGAAAGACCG 1100
BSNT_06029___ 894 TGTTGTTGCCTCCATAAACTCAGTACCATTTGCCAAAATAGCTAAGTTAG 943
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU39300___yx 1101 TGTTGTTGCCTCCATAAACTCAGTACCATTTGCCAAAATAGCTAAGTTAG 1150
BSNT_06029___ 944 AAAAGTTAATAGATATTAATAAACTTATTAATGATGGGAAAAAGGCTAAG 993
||||||||||||||||||||||||||||||||.|||||||||||||||||
BSU39300___yx 1151 AAAAGTTAATAGATATTAATAAACTTATTAATAATGGGAAAAAGGCTAAG 1200
BSNT_06029___ 994 AAGGCTTCGGAAGTTAAAAACGTTGCTAAGGATA------------CGGG 1031
|||||||||||||||||||||||||||||||||| ||..
BSU39300___yx 1201 AAGGCTTCGGAAGTTAAAAACGTTGCTAAGGATAAAGGGAAAATTGCGAA 1250
BSNT_06029___ 1032 TAATG---GTGTACCTTCTTATGGAAAGAAGTC--------------AGT 1064
|.||| |||.|.||.||.||..||..||.|| |||
BSU39300___yx 1251 TGATGTAAGTGGATCTGCTAATAAAATTAATTCTGATTTAATAAAAAAGT 1300
BSNT_06029___ 1065 A-CCTAAAG-----GACCTTAC--------AGAGAAGTAC---------- 1090
| .|||.|| ||.| .|| ||||||.|||
BSU39300___yx 1301 ATGCTAGAGATATAGAAC-AACGCACAGGTAGAGAATTACCTAAAAATCA 1349
BSNT_06029___ 1091 -ATGGATTCCCAGTTAAAG--------------TAAAGCCAGGTGCTCAA 1125
||.||| .|.|||||| ||||| ||
BSU39300___yx 1350 AATAGAT---AAATTAAAGGAAGCATTAAGAAATAAAG----------AA 1386
BSNT_06029___ 1126 GAGAAACATAT-TC-CTAAT----ACGCCAAATTACAAACAAG---AAAT 1166
.|.|||.|.|| || |.||| ||..|||| |.|||.| ||||
BSU39300___yx 1387 TATAAAAAAATGTCACCAATAGAGACTGCAAA----ACACAGGACTAAAT 1432
BSNT_06029___ 1167 AGCAAATGGTAAAAACAAGAGTATTTTCT------ATGGTGATAATAAAA 1210
...|.|..|||||||..|.|| ||.| |||| .||.||||
BSU39300___yx 1433 TTGATAAAGTAAAAAATAAAG----TTATAAAAGAATGG---GAAGAAAA 1475
BSNT_06029___ 1211 CA--GCACAGGAATTGC---TTGATAAGTTTGCAGGAAAAGGT--CAACT 1253
|| |.|||..|||.|| ||.||| |||||||.|| .|.||
BSU39300___yx 1476 CACTGGACAAAAATGGCCTGTTTATA-------AGGAAAATGTTGTATCT 1518
BSNT_06029___ 1254 ACTACCAAAC-GGTAAA--------AAAGAAAG------AGTA-GACTTT 1287
.|..|||| |||||| |||.|||| |||| || |
BSU39300___yx 1519 --GAAAAAACAGGTAAAATTATTAGAAAAAAAGGGGATAAGTATGA---T 1563
BSNT_06029___ 1288 GGTAAACC----AATTGGAAAATACTAT-------GATCGTGATACTGGT 1326
|.| .||| |||| |||||||||.| ||.|.|| |.||||
BSU39300___yx 1564 GCT-CACCATATAATT-GAAAATACTTTTGGCGGAGAACATG--AATGGT 1609
BSNT_06029___ 1327 -GAATA--CAT-----TGAAACTACTA--GAGGAAT--------GATTCA 1358
||||| ||| ..||..|.||| || |.|| ||||||
BSU39300___yx 1610 GGAATATGCATCCAGCAAAATTTCCTAACGA-GCATCAAGCTGGGATTCA 1658
BSNT_06029___ 1359 TTACGGAAAAGACGGAGC-GCATATAGTGCCTTCAGAACCA-TTAAAGAA 1406
| ||.|.||.|..|.| |||.|| |||..| ||||||.|
BSU39300___yx 1659 T---GGTACAGGCTCACCAGCAAAT----------GAATTATTTAAAGGA 1695
BSNT_06029___ 1407 GTAA----------- 1410
|..|
BSU39300___yx 1696 GGCAAAAAAAAATGA 1710
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