Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06175 and BSU40250

See Amino acid alignment / Visit BSNT_06175 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:46
# Commandline: needle
#    -asequence dna-align/BSNT_06175___yycR.1.22522.seq
#    -bsequence dna-align/BSU40250___yycR.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06175___yycR-BSU40250___yycR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06175___yycR-BSU40250___yycR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06175___yycR
# 2: BSU40250___yycR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1227
# Identity:    1190/1227 (97.0%)
# Similarity:  1190/1227 (97.0%)
# Gaps:           0/1227 ( 0.0%)
# Score: 5802.0
# 
#
#=======================================

BSNT_06175___      1 ATGGGAGGAATGGCGTTGACAGGAAACAAAGCGGTTGTGTACAAAGGCAA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy      1 ATGGGAGGAATGGCGTTGACAGGAAACAAAGCGGTTGTGTACAAAGGCAA     50

BSNT_06175___     51 AGGGACTGTAGCGGTGGAGGATATCGGTTATCCGGAGTTAATCTTGAGGG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy     51 AGGGACTGTAGCGGTGGAGGATATCGGTTATCCGGAGTTAATCTTGAGGG    100

BSNT_06175___    101 ACGGGCCCGGCGTCCCGAAGGCGAATGTGAATCGAAAATGTGAGCATGGG    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy    101 ACGGGCCCGGCGTCCCGAAGGCGAATGTGAATCGAAAATGTGAGCATGGG    150

BSNT_06175___    151 GTTATTCTCAAAGTCATTACAACCAACATTTGCGGAAGCGACCAGCATAT    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy    151 GTTATTCTCAAAGTCATTACAACCAACATTTGCGGAAGCGACCAGCATAT    200

BSNT_06175___    201 GGTCAGAGGCCGCACAACGGCGCCTGAAGGCTTGGTGCTCGGGCATGAAA    250
                     ||||||||||||||||||||||||.|||||||||||||||||||||||||
BSU40250___yy    201 GGTCAGAGGCCGCACAACGGCGCCAGAAGGCTTGGTGCTCGGGCATGAAA    250

BSNT_06175___    251 TCACCGGAGAAGTCATTGAAACGGGGCGTGATGTCGAATTTATCAAAAAG    300
                     |.||.|||||||||||||||||||||||||||||.||||||||||||||.
BSU40250___yy    251 TTACGGGAGAAGTCATTGAAACGGGGCGTGATGTTGAATTTATCAAAAAA    300

BSNT_06175___    301 GGCGATATCGTATCCGTTCCTTTCAATATTGCCTGCGGACGCTGTGTGAT    350
                     ||.|||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy    301 GGAGATATCGTATCCGTTCCTTTCAATATTGCCTGCGGACGCTGTGTGAT    350

BSNT_06175___    351 GTGCAAAACGCAGAAAACGCATGTGTGCCTGAATGTCAATCCGGATCGGC    400
                     |||||||||||||||||||||||||||||||||||||||||||||.||||
BSU40250___yy    351 GTGCAAAACGCAGAAAACGCATGTGTGCCTGAATGTCAATCCGGACCGGC    400

BSNT_06175___    401 CGGGATCTGCTTACGGCTACGTCGATATGGGCGGCTGGATCGGCGGCCAG    450
                     |||||||.||||||||||||||||||||||||||||||.|||||||||||
BSU40250___yy    401 CGGGATCGGCTTACGGCTACGTCGATATGGGCGGCTGGGTCGGCGGCCAG    450

BSNT_06175___    451 TCTGAATACGTCATGGTGCCATACGCTGACTTTCAGCTTTTGGTATTCCC    500
                     ||||||||.||||||||||||||||||||.||||||||||||||||||||
BSU40250___yy    451 TCTGAATATGTCATGGTGCCATACGCTGATTTTCAGCTTTTGGTATTCCC    500

BSNT_06175___    501 TGATAAAGAACAGGCGTTAGAAAAGATTCTCGATTTGACCATGCTGTCCG    550
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
BSU40250___yy    501 TGATAAAGAACAGGCGCTAGAAAAGATTCTCGATTTGACCATGCTGTCCG    550

BSNT_06175___    551 ACATTTTCCCGACCGGCTTCCATGGAGCTTACACAGCGGGCGTGCAAACA    600
                     |||||||.|||||||||||||||||||||||.||||||||||||||||||
BSU40250___yy    551 ACATTTTTCCGACCGGCTTCCATGGAGCTTATACAGCGGGCGTGCAAACA    600

BSNT_06175___    601 GGTTCAACCGTTTACATCGCGGGAGCGGGGCCTGTCGGCTTGGCAGCTGC    650
                     ||||||||||||||.|||||.||||||||.||||||||||||||||||||
BSU40250___yy    601 GGTTCAACCGTTTATATCGCTGGAGCGGGTCCTGTCGGCTTGGCAGCTGC    650

BSNT_06175___    651 ACACTCCGCTCAGCTCCTAGGCGCCTCCACCGTGATTGTCGGCGATCTGA    700
                     |||||||||||||||||||||||||||.||||||||||||||||||||||
BSU40250___yy    651 ACACTCCGCTCAGCTCCTAGGCGCCTCTACCGTGATTGTCGGCGATCTGA    700

BSNT_06175___    701 ACGAAGACAGACTGGCACAGGCAAGAAGCTTCGGCTGTGAAACGGTCAAC    750
                     ||||||||||.|||||||||||.|||||||||||||||||||||||||||
BSU40250___yy    701 ACGAAGACAGGCTGGCACAGGCCAGAAGCTTCGGCTGTGAAACGGTCAAC    750

BSNT_06175___    751 GTGCAAAAACACGACCGCCTCGGCGAGCAAATTGAACAAATACTAGGTGA    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU40250___yy    751 GTGCAAAAACACGACCGCCTCGGCGAGCAAATTGAACAAATACTAGGTGA    800

BSNT_06175___    801 ACCGACCGTTGATGCCGCAGTGGACTGTGTCGGCTTTGAAGCATCTGGCC    850
                     |||.|||||||||||.||||||||||||||||||||||||||||||||.|
BSU40250___yy    801 ACCAACCGTTGATGCTGCAGTGGACTGTGTCGGCTTTGAAGCATCTGGGC    850

BSNT_06175___    851 ACGGCAATCAAGGGGAAGCGCCTGCCGCCGTGCTGAACTCGATCATGGAC    900
                     |||||||||||||.||||||||.|||||||||||||||||.|||||||||
BSU40250___yy    851 ACGGCAATCAAGGAGAAGCGCCAGCCGCCGTGCTGAACTCAATCATGGAC    900

BSNT_06175___    901 GTCACCCAGGTCGGAGGCAGCCTCGGCATTCCAGGCTTATACGTGACCGA    950
                     |||||||||||||||||||||||.||||||||||||||||||||||||||
BSU40250___yy    901 GTCACCCAGGTCGGAGGCAGCCTTGGCATTCCAGGCTTATACGTGACCGA    950

BSNT_06175___    951 AGATCCCGGCGCAAAGGATGCGGACGCTAAAACAGGCTCACTAAAAATCC   1000
                     |||||||||.|||||||||||||||||.||||||||||||.|||||||||
BSU40250___yy    951 AGATCCCGGTGCAAAGGATGCGGACGCCAAAACAGGCTCATTAAAAATCC   1000

BSNT_06175___   1001 GATTCGGACTCGGCTGGGCCAAAGCCCACACCTTCGTCACCGGACAAACA   1050
                     |.|||||||||||||||||||||||||||||||||||||||||||||||.
BSU40250___yy   1001 GCTTCGGACTCGGCTGGGCCAAAGCCCACACCTTCGTCACCGGACAAACG   1050

BSNT_06175___   1051 CCTGCCATGACATACAACCGCAATTTGATGAAAGCGATCCTGAGCGGTAG   1100
                     ||.||||||||||||||||||||||||||||||||||||||||||||.||
BSU40250___yy   1051 CCCGCCATGACATACAACCGCAATTTGATGAAAGCGATCCTGAGCGGCAG   1100

BSNT_06175___   1101 AGCGCAGATCGCAAAAGCCGTCAACGCCACCGTCATTTCTCTGGACGACG   1150
                     ||||||||||||||||||||||||.||||||||.||||||||||||||||
BSU40250___yy   1101 AGCGCAGATCGCAAAAGCCGTCAATGCCACCGTTATTTCTCTGGACGACG   1150

BSNT_06175___   1151 CGCCAAAAGGCTACAGCGACTTTGACAAAGGCGCAGCCAAAAAATTCGTC   1200
                     ||||||||||||||||||||||.|||||||||||||||||||||||||||
BSU40250___yy   1151 CGCCAAAAGGCTACAGCGACTTCGACAAAGGCGCAGCCAAAAAATTCGTC   1200

BSNT_06175___   1201 ATCGACCCGCATGGGACATTGAAGTAA   1227
                     |||||||||||||||||||||||||||
BSU40250___yy   1201 ATCGACCCGCATGGGACATTGAAGTAA   1227


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