Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00027 and RBAM_000160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_00027___serS.1.9828.seq
# -bsequence dna-align/RBAM_000160___serS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00027___serS-RBAM_000160___serS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00027___serS-RBAM_000160___serS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00027___serS
# 2: RBAM_000160___serS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1342
# Identity: 1058/1342 (78.8%)
# Similarity: 1058/1342 (78.8%)
# Gaps: 71/1342 ( 5.3%)
# Score: 4374.0
#
#
#=======================================
BSNT_00027___ 1 ATGGGGATGAGGGCTCTTTTTATTTTCGACAAATCAATAAAAAAAGGAGT 50
RBAM_000160__ 0 -------------------------------------------------- 0
BSNT_00027___ 51 GTTTCGCATGCTTGATACGAAAATGCTGAGAGCAAATTTTCAAGAAATTA 100
|||.||||||||||..||||||||||.|||||||||||..|.|
RBAM_000160__ 1 -------ATGATTGATACGAAGGTGCTGAGAGCCAATTTTCAAGAGGTGA 43
BSNT_00027___ 101 AAGCAAAGCTTGTACACAAAGGCGAAGACTTAACTGATTTTGATAAGTTT 150
||||.|||||..|.|..|||||||||||||||.||||.|||||.||||||
RBAM_000160__ 44 AAGCGAAGCTCATTCCAAAAGGCGAAGACTTATCTGACTTTGACAAGTTT 93
BSNT_00027___ 151 GAGGCGCTGGATG-ATAGACGAAGAGAGCTTATCGGCAAGGTTGAAGAGT 199
||.|.||||||.| |.||| ||||||||||||||||.||.||.|||||..
RBAM_000160__ 94 GAAGAGCTGGACGAAAAGA-GAAGAGAGCTTATCGGTAAAGTAGAAGAAC 142
BSNT_00027___ 200 TAAAAGGAAAACGAAATGAAGTTTCTCAGCAGGTTGCTGTGCTGAAGCGT 249
|.||.||||||||.||||||||.|||||||||||.||.||..||||.||.
RBAM_000160__ 143 TGAAGGGAAAACGCAATGAAGTATCTCAGCAGGTCGCCGTTTTGAAACGG 192
BSNT_00027___ 250 GAGAAAAAAGAAGCGGATCACATTATTAAAGAAATGCGTGAAGTCGGCGA 299
|||||||||||.||.|||||.|||||||||||.|||||.|||||.|||||
RBAM_000160__ 193 GAGAAAAAAGACGCTGATCATATTATTAAAGAGATGCGCGAAGTGGGCGA 242
BSNT_00027___ 300 GGAAATTAAAAAGCTTGATGAAGAATTGCGAACAGTGGAAGCTGA-GCTT 348
.||||||||.||||||||||||||..|.||.||.||.|||.| || |||.
RBAM_000160__ 243 AGAAATTAAGAAGCTTGATGAAGAGCTTCGTACTGTCGAAAC-GACGCTC 291
BSNT_00027___ 349 GATACAATCCTTCTCTCAATCCCGAATATTCCGCATGAGTCTGTACCTGT 398
||.||.||||||||.||.||.|||||.||.|||||.||.||.||.||.||
RBAM_000160__ 292 GAAACCATCCTTCTGTCTATTCCGAACATCCCGCACGATTCAGTGCCCGT 341
BSNT_00027___ 399 CGGTGAAACAGAAGACGACAACGTAGAAGTGCGTAAATGGGGTGAAAAGC 448
.||.|||||.|||||.||.|||.|.|||.|.||.||.|||||.||...||
RBAM_000160__ 342 TGGGGAAACGGAAGATGATAACATTGAAATCCGCAAGTGGGGAGAGGCGC 391
BSNT_00027___ 449 CTTCATTTGCTTATGAGCCGAAGCCGCACTGGGATATTGCGGA-----TG 493
|..|||||.|.|||||||||||.|||||.||||||||.||.|| |.
RBAM_000160__ 392 CGGCATTTTCATATGAGCCGAAACCGCATTGGGATATCGCAGACCATTTA 441
BSNT_00027___ 494 AGCTGGGTATTCTGGATTTTGAACGTGCTGCCAAAGTAACAGGAAGCCGT 543
|.| |||||.|||||.|||||.|||.|.|||||||||||.|||||.
RBAM_000160__ 442 AAC-----ATTCTTGATTTCGAACGCGCTTCAAAAGTAACAGGCAGCCGG 486
BSNT_00027___ 544 TTCGTGTTCTATAAAGGCTTAGGTGCTCGTCTGGAGCGTGCGCTTTATAA 593
||.|||||.||||||||.|||||.||.||.||.||.||.|||||.||.||
RBAM_000160__ 487 TTTGTGTTTTATAAAGGATTAGGCGCCCGCCTCGAACGCGCGCTCTACAA 536
BSNT_00027___ 594 CTTTATGCTTGATCTGCATGTGGATGAGTATAACTACACTGAAGTGATCC 643
|||||||||.|||||.||.||.|||||.|||.|.|||||.|||||.||.|
RBAM_000160__ 537 CTTTATGCTGGATCTTCACGTTGATGAATATGATTACACGGAAGTCATTC 586
BSNT_00027___ 644 CGCCATATATGGTAAACCGCGCAAGCATGACGGGAACGGGGCAGCTTCCT 693
|.||.||||||||||||||..|.||||||||.||.|||||.|||||||||
RBAM_000160__ 587 CTCCTTATATGGTAAACCGTACGAGCATGACAGGTACGGGACAGCTTCCT 636
BSNT_00027___ 694 AAATTTGAAGAGGATGCATTTAAAATCAGAGAAGAAGATTATTTCTTAAT 743
|||||||||||||||||.||||||||||||||||||||||||||||||||
RBAM_000160__ 637 AAATTTGAAGAGGATGCTTTTAAAATCAGAGAAGAAGATTATTTCTTAAT 686
BSNT_00027___ 744 TCCAACGGCGGAAGTGCCGATTACAAACATGCATCGCGATGAAATCCTTT 793
|||.|||||||||||||||||||||||.|||||.||||||||||||.|.|
RBAM_000160__ 687 TCCGACGGCGGAAGTGCCGATTACAAATATGCACCGCGATGAAATCTTAT 736
BSNT_00027___ 794 CAGGTGACAGCCTGCCGATCAACTATGCGGCATTCAGTGCTTGCTTCCGT 843
|.|||||.|.||||||||||||.|||||.||||||||.||||||||||||
RBAM_000160__ 737 CCGGTGAGAACCTGCCGATCAATTATGCCGCATTCAGCGCTTGCTTCCGT 786
BSNT_00027___ 844 TCTGAAGCTGGTTCAGCAGGACGTGACACACGCGGATTAATTCGTCAGCA 893
||.|||||.||.||.||.||.|||||.||||||||.||.||.||.|||||
RBAM_000160__ 787 TCAGAAGCGGGATCTGCCGGCCGTGATACACGCGGTTTGATCCGCCAGCA 836
BSNT_00027___ 894 CCAATTTAATAAAGTTGAGCTTGTAAAGTTTGTGAAGCCTGAAGATTCTT 943
.||.||.||.||.|||||||||||.||.||.||||||||.||||||||||
RBAM_000160__ 837 TCAGTTCAACAAGGTTGAGCTTGTGAAATTCGTGAAGCCGGAAGATTCTT 886
BSNT_00027___ 944 ATGAAGAATTAGAGAAGCTTACAAACCAAGCAGAACGGGTTCTTCAGCTG 993
|||||||..|.||.||.||.||.||.|||||.||.|||||.|||||||||
RBAM_000160__ 887 ATGAAGAGCTTGAAAAACTGACGAATCAAGCTGAGCGGGTGCTTCAGCTG 936
BSNT_00027___ 994 CTTGAGCTTCCATACCGTGTCATGAGCATGTGTACGGGTGATTTAGGCTT 1043
|||||.||.||.||.||||||||||||||||||||.||||||.|.|||||
RBAM_000160__ 937 CTTGAACTGCCGTATCGTGTCATGAGCATGTGTACCGGTGATCTCGGCTT 986
BSNT_00027___ 1044 TACGGCTGCGAAAAAATACGATATCGAAGTTTGGATTCCAAGCCAAGACA 1093
|||.||.||||||||.||||||||.||.||.|||||||||||||||||||
RBAM_000160__ 987 TACAGCCGCGAAAAAGTACGATATTGAGGTATGGATTCCAAGCCAAGACA 1036
BSNT_00027___ 1094 CATATCGAGAAATCTCTTCTTGCAGCAACTTCGAAGCGTTCCAGGCGAGA 1143
||||.||.|||||.|||||||||||.|||||.||.||.||||||||||||
RBAM_000160__ 1037 CATACCGTGAAATTTCTTCTTGCAGTAACTTTGAGGCCTTCCAGGCGAGA 1086
BSNT_00027___ 1144 CGTGCGAATATTCGATTCAGACGTGAAGCGAAAGGCAAGCCTGAGCATGT 1193
||.||.||.||||||||||||||.|||||||||||||||||.||||||||
RBAM_000160__ 1087 CGCGCAAACATTCGATTCAGACGCGAAGCGAAAGGCAAGCCGGAGCATGT 1136
BSNT_00027___ 1194 ACACACACTGAACGGTTCAGGACTGGCGGTTGGAAGAACAGTTGCCGCTA 1243
.||.|||.|.|||||||||||.||.||.||.||.||||||||.||.||.|
RBAM_000160__ 1137 GCATACATTAAACGGTTCAGGTCTTGCAGTCGGCAGAACAGTAGCTGCCA 1186
BSNT_00027___ 1244 TCTTAGAAAATTATCAGCAGGAAGACGGAAGCGTTGTGATTCCGAAAGTG 1293
||||||||||.||||||||||||||||||||.||..|.||||||||||||
RBAM_000160__ 1187 TCTTAGAAAACTATCAGCAGGAAGACGGAAGTGTCATCATTCCGAAAGTG 1236
BSNT_00027___ 1294 CTTCGTCCTTATATGGGGAATAGAGAAGTAATGAAACCGTAA 1335
|||||||||||||||||.||||.||||||.||.|||||||||
RBAM_000160__ 1237 CTTCGTCCTTATATGGGAAATAAAGAAGTCATCAAACCGTAA 1278
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