Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00031 and RBAM_000190

See Amino acid alignment / Visit BSNT_00031 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:48
# Commandline: needle
#    -asequence dna-align/BSNT_00031___dck.1.9828.seq
#    -bsequence dna-align/RBAM_000190___dcK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00031___dck-RBAM_000190___dcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00031___dck-RBAM_000190___dcK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00031___dck
# 2: RBAM_000190___dcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 669
# Identity:     519/669 (77.6%)
# Similarity:   519/669 (77.6%)
# Gaps:          30/669 ( 4.5%)
# Score: 2008.5
# 
#
#=======================================

BSNT_00031___      1 ATGAAGGAACA-TCATATCCCTAACAATTCAATTATTACAGTAGCAGGAA     49
                     |||||.| ||| ||||||.||.|||||..|.|||||.||||||||.||||
RBAM_000190__      1 ATGAAAG-ACATTCATATTCCAAACAACGCCATTATAACAGTAGCGGGAA     49

BSNT_00031___     50 CAGTAGGTGTCGGAAAATCGACTTTAACAAAAACTTTAGCTAAACGGCTT     99
                     |.|||||.|||||||||||||||||.||.|||.|||||||.||||||||.
RBAM_000190__     50 CGGTAGGAGTCGGAAAATCGACTTTGACCAAAGCTTTAGCAAAACGGCTC     99

BSNT_00031___    100 GGATTTAAAACATCGTTGGAGGAAGTCGATCATAATCCATACTTGGAAAA    149
                     ||.|||.|.||.||..|.||||||||.|||.|.||.||.||.||.||.||
RBAM_000190__    100 GGGTTTCATACCTCACTCGAGGAAGTGGATGAAAACCCTTATTTAGAGAA    149

BSNT_00031___    150 GTTCTATCATGATTTTGAACGTTGGAGCTTTCACCTTCAAATTTACTTCT    199
                     |||.|||||.||||||||||||||||||||.||..|.||||||||.||..
RBAM_000190__    150 GTTTTATCACGATTTTGAACGTTGGAGCTTCCATTTACAAATTTATTTTC    199

BSNT_00031___    200 TAGCTGAACGCTTCAAAGAACAGAAAACAATTTTTGAAGCCGGCGGAGGT    249
                     |.|||||.||.||||||||.|||||||..||.||||||.|.|||||.||.
RBAM_000190__    200 TGGCTGAGCGGTTCAAAGAGCAGAAAAACATGTTTGAATCAGGCGGCGGA    249

BSNT_00031___    250 TTTGTACAGGATCGTTCGATTTATGAAGATACAGGAATTTTCGCAAAAAT    299
                     ||.||.|||||.|||||||||||||||||||||||.||.|||||||||||
RBAM_000190__    250 TTCGTGCAGGACCGTTCGATTTATGAAGATACAGGCATATTCGCAAAAAT    299

BSNT_00031___    300 GCATGCTGATAAAGGGACAATGTCAAAGGTT----GATTATAAGACTTAC    345
                     ||||||.||||||||.||.|||||    |.|    |||||.|..||.|||
RBAM_000190__    300 GCATGCCGATAAAGGAACCATGTC----GCTGACAGATTACACAACATAC    345

BSNT_00031___    346 ACAAGCCTTTTCGAAGCAATGGTAATGACACCGTATTTCCCACACCCAGA    395
                     ||||||||.||.||.||.|||||.|||||.|||||.|||||.||.||.||
RBAM_000190__    346 ACAAGCCTATTTGAGGCGATGGTCATGACGCCGTACTTCCCGCATCCTGA    395

BSNT_00031___    396 TGTGTTGATCTATTTAGAAGGAGATCTGGAGAACATTTTAAACCGGATTG    445
                     |||.|||||||||||||||||.||.||.||.||||||.||||||||||||
RBAM_000190__    396 TGTTTTGATCTATTTAGAAGGCGACCTTGAAAACATTATAAACCGGATTG    445

BSNT_00031___    446 AACAACGCGGCCGTGAGATGGAGCTTCAGACAAGCAGGTCTTATTGGGAA    495
                     ||.|.||.|||||.|||||||||||.|||||||.|.|.||||||||||||
RBAM_000190__    446 AAAAGCGGGGCCGCGAGATGGAGCTGCAGACAAACCGCTCTTATTGGGAA    495

BSNT_00031___    496 GAAATGCATACACGCTACGAGAACTGGATAAGCGGTTTTAATGCCTGCCC    545
                     ||.|||.|||||||.|||||..|||||||.|||||||||||.||||||||
RBAM_000190__    496 GAGATGTATACACGGTACGAAGACTGGATCAGCGGTTTTAACGCCTGCCC    545

BSNT_00031___    546 TGTTTTAAAACTTCGCATTGAAGATTATGATCTTCTGAA--CGACGAAAA    593
                     |||..|.|||.|.|||||||||||||||||.||  ||||  .||.|||.|
RBAM_000190__    546 TGTGCTGAAAGTGCGCATTGAAGATTATGACCT--TGAAGCTGATGAACA    593

BSNT_00031___    594 CTCGATTGAAAATATTG-TAGATCAAATTGCTTCAGTTATTCATGATAAT    642
                     .|| |.||.||...||| |.||..|||     |||||.|  |.||||.|.
RBAM_000190__    594 GTC-ACTGGAACCTTTGATCGAAAAAA-----TCAGTCA--CGTGATCAA    635

BSNT_00031___    643 CAAAAAAAGTGA-------    654
                     |.||||.||..|       
RBAM_000190__    636 CGAAAACAGAAATAAATAA    654


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