Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00034 and RBAM_000210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:48
# Commandline: needle
# -asequence dna-align/BSNT_00034___yaaH.1.9828.seq
# -bsequence dna-align/RBAM_000210___yaaH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00034___yaaH-RBAM_000210___yaaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00034___yaaH-RBAM_000210___yaaH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00034___yaaH
# 2: RBAM_000210___yaaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1311
# Identity: 950/1311 (72.5%)
# Similarity: 950/1311 (72.5%)
# Gaps: 57/1311 ( 4.3%)
# Score: 3269.5
#
#
#=======================================
BSNT_00034___ 1 GTGGTAAAACAAGGCGACACTCTTTCTGCTATCGCTTCACAATACAGAAC 50
||.||||..||||||||.|||||.|||||.||..|.|..|||.|.||
RBAM_000210__ 1 ---GTGAAACGGGGCGACACGCTTTCCGCTATTGCGGCGCGCTACCGGAC 47
BSNT_00034___ 51 AACCGCAAATGAGATCGCTGAAACGAATGAAATACCGAATCCCGACAGCC 100
..|||||||||..||.||.|||.|.|||.||.|.||.|||||..|.| |.
RBAM_000210__ 48 TGCCGCAAATGTCATTGCGGAAGCAAATAAACTGCCTAATCCAAATA-CA 96
BSNT_00034___ 101 TT-GTTGTCGGACAAACCATTGTCATTCCAATAGCTGGCCAGTTCTATGA 149
|| |||||||||||||||.|||||||.||.||.|..||.||.|..||.||
RBAM_000210__ 97 TTGGTTGTCGGACAAACCCTTGTCATCCCGATTGAGGGTCAATATTACGA 146
BSNT_00034___ 150 TGTGAAGCGAGGTGATACCCTGACATCTATCGCCCGGCAG--TTCAATAC 197
.|||||.|.|||||||||.||..|..|.|||| |||||.| ||| |||.
RBAM_000210__ 147 AGTGAAACAAGGTGATACTCTCGCGGCAATCG-CCGGCCGTTTTC-ATAT 194
BSNT_00034___ 198 AACGGCAGCCGAGCTCGCAAGGGTTAACCGCATCCAGTTAAATACCGTGC 247
|.||||.||.|||||.||.|||||||||.|.||.||| ||..||
RBAM_000210__ 195 ATCGGCCGCGGAGCTTGCGAGGGTTAACGGAATTCAG-------CCCGGC 237
BSNT_00034___ 248 TTCAGATT-------GGTTTCCGTTTATACAT--CCCACCA-TCTCCTAA 287
..||.||| ||...|||..|.||||| |.||.|| .|...|||
RBAM_000210__ 238 ACCACATTGAGAGCCGGAACCCGCCTTTACATTCCGCAGCAGGCGAATAA 287
BSNT_00034___ 288 ACGAGACATCGAATCAAATGCTTATTTGGAGCCCCGAGGAAATCAA--GT 335
.|..||.||||||||||||||.|||.|.||.||.||.|||| |.| ||
RBAM_000210__ 288 GCCCGATATCGAATCAAATGCATATATAGAACCGCGGGGAA--CGAGCGT 335
BSNT_00034___ 336 CAGCGAAAATCTCCAGCAGGCGGCCAGAGAATCGTCGCCCTACTTAACGT 385
.||||..||||||||.||||||||.||.||..|.||.||.||.|||||.|
RBAM_000210__ 336 AAGCGCTAATCTCCAACAGGCGGCAAGGGAGGCCTCTCCTTATTTAACAT 385
BSNT_00034___ 386 ACCTTGGCGCATTCAGCTTCCAGGCACAGCGTAACGGAACCTTAGTCGCA 435
||||.|||||||||||.||.||.|..|||||.|||||.||.|||...|.|
RBAM_000210__ 386 ACCTCGGCGCATTCAGTTTTCAAGTGCAGCGGAACGGGACTTTAAAGGAA 435
BSNT_00034___ 436 CCGCCTTTAACGAATTTAAGGAGCATTACAGAAAGTCAAAATACAACATT 485
||||||||.||.|||||||..|||||.|..||.||.||.||.||.|||.|
RBAM_000210__ 436 CCGCCTTTGACCAATTTAAAAAGCATCAGTGACAGGCACAACACCACACT 485
BSNT_00034___ 486 GATGATGATTATAACGAACCTAGAAAACCAAGCATTCAGCGATGAACTTG 535
|||||||||.||.||.|||||.|||||..|.|||||||||||||||||.|
RBAM_000210__ 486 GATGATGATCATCACCAACCTTGAAAATGACGCATTCAGCGATGAACTCG 535
BSNT_00034___ 536 GCCGGATCCTTTTGAACGACGAAACTGTAAAAAGACGGCTTCTAAATGAA 585
|.|||.||.|.|||||.|||.|.||.||.||||.|...||..|..|.|||
RBAM_000210__ 536 GGCGGCTCATCTTGAATGACAATACAGTGAAAACAAAACTCTTTCAGGAA 585
BSNT_00034___ 586 ATAGTCGAGAATGCCAGAAGATATGGCTTCCGTGACATTCATTTCGACTT 635
||.|||...|..||.|.||..||.|||||.||.||.|||||.||.||.||
RBAM_000210__ 586 ATCGTCTCCACGGCTAAAAAGTACGGCTTTCGCGATATTCACTTTGATTT 635
BSNT_00034___ 636 TGAATATTTGCGGCCCCAGGATAGAGAGGCTTATAATCAATTCCTCCGCG 685
.||||||||.||.||.|||||.|||||.||.||.||||..||..|.||.|
RBAM_000210__ 636 CGAATATTTACGTCCACAGGACAGAGAAGCCTACAATCGTTTTTTACGTG 685
BSNT_00034___ 686 AAGCAAGG--GATCTTTTTCATCGAGAGGGCTTAGAA-ATTTCTACGGCT 732
||||.||| || ||||||||||.||.||| |.||| |||||.|||||.
RBAM_000210__ 686 AAGCGAGGACGA--TTTTTCATCGGGAAGGC-TGGAAGATTTCAACGGCG 732
BSNT_00034___ 733 CTTGCTCCTAAAACAAGTGCAACACAGCAGGGCAGATGGTATGAAGCTCA 782
||||||||.|||||.||.||.||.|||...||||.||||||.|||||.||
RBAM_000210__ 733 CTTGCTCCGAAAACGAGCGCGACTCAGGCCGGCAAATGGTACGAAGCACA 782
BSNT_00034___ 783 TGATTACAGGGCACATGGCCAAATTGTCGACTTTGTTGTTCTCATGACAT 832
|||.||.|||||||||||..||||.|||||||||||.||..|||||||||
RBAM_000210__ 783 TGACTATAGGGCACATGGAGAAATCGTCGACTTTGTCGTGATCATGACAT 832
BSNT_00034___ 833 ATGAATGGGGCTATAGCGGCGGGCCGCCTCAAGCGGTTTCTCCAATTGGA 882
||||.|||||.||.|||||.||.|||.||||.||.||.||.||.||.||.
RBAM_000210__ 833 ATGAGTGGGGGTACAGCGGAGGCCCGGCTCAGGCCGTATCACCTATCGGC 882
BSNT_00034___ 883 CCTGTCCGTGATGTCATAGAATATGCTTTGACTGAAATGCCTGCGAACAA 932
|||||..|..|||||||.||.||.||..||||.|||||||||.|....||
RBAM_000210__ 883 CCTGTAAGAAATGTCATTGAGTACGCGCTGACGGAAATGCCTTCTTCAAA 932
BSNT_00034___ 933 AATTGTCATGGGCCAGAATTTATATGGATATGACTGGACGCTGCCATATA 982
|||.|||||||||||||||.|.||.||.|||||.|||||.|||||.|.||
RBAM_000210__ 933 AATCGTCATGGGCCAGAATATGTACGGCTATGATTGGACACTGCCTTTTA 982
BSNT_00034___ 983 CAGCAGGGGGAACTCCGGCAAGAGCAGTAAGCCCTCAGCAAGCCATTG-T 1031
|.|| ||||||..|.||.|.|||.||.||.||||||||.||.||.| |
RBAM_000210__ 983 -AACA--GGGAACGACAGCCAAAGCCGTCAGTCCTCAGCAGGCAATCGCT 1029
BSNT_00034___ 1032 CATAGCTGATCAGAAC-----AATGCTTC--CATTCAGTATGATCAAACC 1074
||| .|||.|| ||.| || ||||||.|||||..|||||
RBAM_000210__ 1030 -----CTG-GCAGCACGCCATAAAG--TCGACATTCAATATGACGAAACC 1071
BSNT_00034___ 1075 GCTCAAGCTCCTTTCTTCCGCTATACTGATGCAGAAAACAGAAGGCACGA 1124
||.||.|||||.||||||||.||.||.||||.|.|..|.|||.||||.||
RBAM_000210__ 1072 GCCCAGGCTCCATTCTTCCGATACACGGATGAAAATCAGAGACGGCATGA 1121
BSNT_00034___ 1125 GGTATGGTTCGAGGATGCCCGCTCGATTCAAGCAAAATTCAATCTGATTA 1174
.||||||||.||.||.||.||.||.||||||||.|||||||||.|.||||
RBAM_000210__ 1122 AGTATGGTTTGAAGACGCACGATCCATTCAAGCGAAATTCAATTTAATTA 1171
BSNT_00034___ 1175 AAGAGCTGAATTTAAGAGGCATCAGCTATTGGAAGCTGGGTCTTTCCTTT 1224
||||.||..||||||||||.||||||||||||||.||.||.|||||.||.
RBAM_000210__ 1172 AAGAACTTCATTTAAGAGGAATCAGCTATTGGAAACTCGGCCTTTCTTTC 1221
BSNT_00034___ 1225 CCACAAAACTGGCTGCTGCT-GTCTGATCAATTTAATGTTGTCAAAAAGA 1273
||.|||||||||||..|||| |.| |||||||||.||.||||.|||.|||
RBAM_000210__ 1222 CCGCAAAACTGGCTTTTGCTCGGC-GATCAATTTCATATTGTGAAAGAGA 1270
BSNT_00034___ 1274 CGTTTCGATAA 1284
|||||||.|||
RBAM_000210__ 1271 CGTTTCGTTAA 1281
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