Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00058 and RBAM_000350

See Amino acid alignment / Visit BSNT_00058 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:49
# Commandline: needle
#    -asequence dna-align/BSNT_00058___yaaN.1.9828.seq
#    -bsequence dna-align/RBAM_000350___yaaN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00058___yaaN-RBAM_000350___yaaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00058___yaaN-RBAM_000350___yaaN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00058___yaaN
# 2: RBAM_000350___yaaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1206
# Identity:     810/1206 (67.2%)
# Similarity:   810/1206 (67.2%)
# Gaps:         132/1206 (10.9%)
# Score: 2597.5
# 
#
#=======================================

BSNT_00058___      1 ATGAACCGAGACCAAAGCGACC-TTCATATAGATGAATTATTGGCAGATC     49
                     ||       |.|||||  |||| |||    .||.||        |||   
RBAM_000350__      1 AT-------GGCCAAA--GACCGTTC----CGACGA--------CAG---     26

BSNT_00058___     50 CTTTTGGTGGTAACATAG-------AGAT-ACCAGGTTCGGAGGCTGTAA     91
                                  |||.|       |.|| |||||...|     ||.|||
RBAM_000350__     27 -------------CATGGGCGCCCAAAATGACCAGACCC-----CTCTAA     58

BSNT_00058___     92 AAGCAGAGAAAGAGCAAGTACGGCTTGTTGATGTTCTTCCTGAGGAAAAC    141
                     |                     |||||..|||...||..||||.||||| 
RBAM_000350__     59 A---------------------GCTTGCAGATACGCTGTCTGAAGAAAA-     86

BSNT_00058___    142 AAG-GAAAAAGCAATTCAGCTTGCTGGACAGATTGATCATAAAAATATGC    190
                     ||| |||...|||.|||||||.||||.|.|..|.||.|.|.|.||.||||
RBAM_000350__     87 AAGAGAAGCGGCACTTCAGCTCGCTGAAAAACTGGACCCTGAGAACATGC    136

BSNT_00058___    191 AAAGCATTGTCTTATACGGTTCACAAGCTCAATCTAAACTGCTGAACTTT    240
                     ||||||||||..|.|..||||||||.||.||..|.||.||.|||.|.|||
RBAM_000350__    137 AAAGCATTGTTCTGTTTGGTTCACAGGCGCAGGCGAATCTTCTGGAATTT    186

BSNT_00058___    241 TCTCATGATATGATTAATCATGTTCAAAAGAAGGATGTCGGGGAGATTGG    290
                     ||.||....|||||..|.||.||.||||..||.||||..||.|||||.||
RBAM_000350__    187 TCCCACACGATGATAGAGCACGTGCAAAGAAAAGATGCAGGAGAGATGGG    236

BSNT_00058___    291 CGAAATACTTGG-AGAGCTGATGAAAAAGCTGGAGCAAGTAAATCCTGAT    339
                     ..||||| |||| .||.|||||||..|||||.||.||.||.||.||||||
RBAM_000350__    237 ACAAATA-TTGGCTGATCTGATGATGAAGCTTGACCAGGTCAACCCTGAT    285

BSNT_00058___    340 GATCTCCA-ATCTAAGAA-AAAGGGTATTTTGGCACGCATGTTTGGAAGA    387
                     |||||.|| || .||||| ||||||| ||||.||.||..|||||..|||.
RBAM_000350__    286 GATCTGCAGAT-GAAGAACAAAGGGT-TTTTCGCCCGGCTGTTTAAAAGG    333

BSNT_00058___    388 GTATCAAGTTCTCTTCAAGAGGTGCTGTCTAAATACCAAAAGACCAGTGT    437
                     ||.||..|||||.|.||.||.|||||.||.|||||.||||||||.|||||
RBAM_000350__    334 GTGTCCGGTTCTGTGCAGGAAGTGCTTTCGAAATATCAAAAGACAAGTGT    383

BSNT_00058___    438 GCAGATAGACAGAATCAGCTTGAA-GCTGGAGCACTCTAAAAA--TGCTT    484
                     ||||||.|||.|.|||||| .||| ||||||.||.||||||||  ||||.
RBAM_000350__    384 GCAGATTGACCGTATCAGC-AGAAGGCTGGAACATTCTAAAAATGTGCTG    432

BSNT_00058___    485 TAATCAGTGACAACAAGCTGTTAGAGCAGTTATATGAAAAAAATAAAGAA    534
                     |  |.||||||||.||..|||||||.|||.|.||.|...||||||||.|.
RBAM_000350__    433 T--TGAGTGACAATAAATTGTTAGATCAGCTGTACGCCCAAAATAAACAG    480

BSNT_00058___    535 TATTTTGCCGCGCTGA-------ATGTTTATATTGCTGCAGGAGAACTGA    577
                     ||.|||     .||||       |||  |||||.||.||.||.|||.|.|
RBAM_000350__    481 TACTTT-----ACTGATTTAACTATG--TATATAGCAGCGGGGGAATTAA    523

BSNT_00058___    578 AGCTGGAGGAATTAAAAACGAAAAC-AATTCCTGAACTGAAGCA--ACAG    624
                     |..|.||.||..|.||||| |||.| .||.||.|||  |..|||  |.|.
RBAM_000350__    524 AATTAGATGAGCTGAAAAC-AAAGCTGATACCCGAA--GCGGCAAGAAAA    570

BSNT_00058___    625 GCTGAAT--CGAGTGATCATAACCAAATGGCCGTTCAAGAGGTGAATGAT    672
                     ||.||||  |.|  ||.||.||.||||||||||..||.||.|||||||||
RBAM_000350__    571 GCCGAATTACAA--GAACACAATCAAATGGCCGCGCAGGAAGTGAATGAT    618

BSNT_00058___    673 TTAATTCAATTTGCTGACCGGTTAGATAAAAGGGTGCATGATTTGTTGCT    722
                     .|....||.|||||.|||||..|.|||||.||||||||||||.||.||||
RBAM_000350__    619 CTTCGCCAGTTTGCCGACCGTCTGGATAAGAGGGTGCATGATCTGCTGCT    668

BSNT_00058___    723 GAGCAGGCAAGTTACAATTCAAAGTGCACCGCAAATCAGGCTGATTCAAA    772
                     |||||||||..||||..||||.|||||.|||||||||.|.||||||||||
RBAM_000350__    669 GAGCAGGCAGATTACGCTTCAGAGTGCGCCGCAAATCCGCCTGATTCAAA    718

BSNT_00058___    773 ATACAAACCAAGCGTTAGCTGAAAAGATTCAGTCATCCATTGTGACAGCG    822
                     |.||.||.||.||..|.||.||.||.||||||||.||||||||.||.||.
RBAM_000350__    719 ACACGAATCAGGCACTGGCAGAGAAAATTCAGTCCTCCATTGTTACGGCT    768

BSNT_00058___    823 ATTCCGTTATGGAAAAATCAAGTTGCCATTGCGCTGACGCTTTTAAGGCA    872
                     |||||.||||||||.||||||||.|||||.||||||||||||.|.|||||
RBAM_000350__    769 ATTCCTTTATGGAAGAATCAAGTCGCCATCGCGCTGACGCTTATGAGGCA    818

BSNT_00058___    873 GCGCAATGCAGTGGATGCACAACAGAAAGTATCTGATACAACCAATGAGC    922
                     |||.|.|||.|..||||..||.|||||.|...|.|||||.||.|||.|..
RBAM_000350__    819 GCGGAGTGCGGCAGATGTGCAGCAGAAGGCGGCGGATACGACAAATCAAT    868

BSNT_00058___    923 TTTTGCTGAAAAATGCGGAGCTTTTAAAAACCAATACAATTGAAACTGCA    972
                     |..||||||||||.||.||.|||.|.|||||.|.||||.|.||.|||||.
RBAM_000350__    869 TGCTGCTGAAAAACGCTGAACTTCTGAAAACAAGTACAGTCGAGACTGCG    918

BSNT_00058___    973 CGGGCAAATGAAAGAGGCCTTGTTGATATAGATACCTTGAAGAAGGTGCA   1022
                     ...||.|||||..|.||.||||||||....||.|||.|.||.||.|||||
RBAM_000350__    919 AAAGCCAATGAGCGCGGACTTGTTGAAGCGGAAACCCTCAAAAAAGTGCA    968

BSNT_00058___   1023 GGAAAGCTTAATAAGCACGCTTGAAGAAA-CACTGACTATACAAGAAGAA   1071
                     ||||||||||.|.|||||.|||||||||| || ||.||||.|||||||||
RBAM_000350__    969 GGAAAGCTTAGTCAGCACACTTGAAGAAATCA-TGTCTATTCAAGAAGAA   1017

BSNT_00058___   1072 GGACGAATCAAACGCCGTCAGGCAGAAGAAGAGCTCATGATGATGGAAGG   1121
                     ||..||||.||||||.|.|..||.||.||.|||||..|.||.||||||||
RBAM_000350__   1018 GGCAGAATGAAACGCAGGCGTGCCGAGGAGGAGCTTGTTATCATGGAAGG   1067

BSNT_00058___   1122 CGACCTGAAGCAAAAGCTGCTT-ACA---------------ATAAAGGAA   1155
                     |||..|.||..|.||||||||| |.|               ||||.||..
RBAM_000350__   1068 CGATTTAAAAAAGAAGCTGCTTGATATGAGGTCCGGCCGGGATAACGGCT   1117

BSNT_00058___   1156 AGATAG   1161
                     ||    
RBAM_000350__   1118 AG----   1119


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