Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00059 and RBAM_000360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_00059___yaaO.1.9828.seq
# -bsequence dna-align/RBAM_000360___yaaO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00059___yaaO-RBAM_000360___yaaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00059___yaaO-RBAM_000360___yaaO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00059___yaaO
# 2: RBAM_000360___yaaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1521
# Identity: 1016/1521 (66.8%)
# Similarity: 1016/1521 (66.8%)
# Gaps: 165/1521 (10.8%)
# Score: 3210.0
#
#
#=======================================
BSNT_00059___ 1 ATGAACACACCTTTATATAAAGCATTAATTCAACATGCGAGAAGAAATTC 50
|||.|.|||||||||||||.|||..|.||..|.||||||....|||||.|
RBAM_000360__ 1 ATGGAGACACCTTTATATACAGCGCTGATGAAGCATGCGCACCGAAATAC 50
BSNT_00059___ 51 TCATTCATTTCATGTTCCGGGACATCACAATGGAGATGTCTTTTTTGATG 100
..||||.|||||||||||||||||||||||||||||||||||||||||||
RBAM_000360__ 51 GTATTCTTTTCATGTTCCGGGACATCACAATGGAGATGTCTTTTTTGATG 100
BSNT_00059___ 101 ACGCTAAGTCAATAT-TCGATCCGCTTCTCACCATTGATGTAACTGAACT 149
|.||.||.||..||| ||.|| |.|||.|..|.||||||.|.|||||..|
RBAM_000360__ 101 AAGCCAAATCTGTATATCAAT-CTCTTTTATCTATTGATATGACTGAGAT 149
BSNT_00059___ 150 GGCAGGATTGGATGATCTCCATCATCCTTCCGGGGTGATTAAGGAAGCTC 199
..|.||..|.|||||..|.|||||.||..|.|||||.|||||||||||.|
RBAM_000360__ 150 CACGGGTCTTGATGACTTGCATCACCCGACGGGGGTCATTAAGGAAGCGC 199
BSNT_00059___ 200 AGGAGCTTGTCAGTCA-ATTATATGGATCGGCGGAAAGTTTTTTTCTGGT 248
||||..|.||.|| || |||.||.||.||...|||||||||.|||||.||
RBAM_000360__ 200 AGGATTTGGTGAG-CAGATTTTACGGCTCTCAGGAAAGTTTCTTTCTCGT 248
BSNT_00059___ 249 AAATGGTACGACTGTCGGAAACTTAGCGATGATTTTATCTGTTTGTGAAC 298
.|||||.|||||.|.|||.||..|.||||||||||||.||||||||||||
RBAM_000360__ 249 CAATGGAACGACCGCCGGCAATCTGGCGATGATTTTAGCTGTTTGTGAAC 298
BSNT_00059___ 299 CTGGTGATACAATTCTGGTTCAAAGAAACTGTCATAAATCTGTATTTCAT 348
|.|||||..|.||||||.|.||..|.||.|||||.||.|||||.||.|||
RBAM_000360__ 299 CGGGTGAACCCATTCTGATCCAGCGTAATTGTCACAAGTCTGTTTTCCAT 348
BSNT_00059___ 349 GCTGTTGATTTGGCCGGTGCTAAGCCGGTTTATCTTGCACCTGACGTTGA 398
||.|..|..||||||||.||.||||||||||||.|.||.||.||..|.||
RBAM_000360__ 349 GCGGCGGCATTGGCCGGAGCCAAGCCGGTTTATTTGGCGCCGGAAATCGA 398
BSNT_00059___ 399 TTCAGCGATGCATGTGCCTACGCATGT-TCCGCTTGGAACAATTAAAGAG 447
|..|...|||||||||||..|.||||| ||| |||..|...||..||.|.
RBAM_000360__ 399 TGAAAACATGCATGTGCCGGCACATGTATCC-CTTTCAGTCATCGAAAAA 447
BSNT_00059___ 448 GCCCTGGAAGCATATCCAGATGCGAAAGG-CTTGGTACTGACCAATCCGA 496
||.||||...|||||||..|.|||||||| ||| ||.|||||||||||||
RBAM_000360__ 448 GCGCTGGCGTCATATCCGAACGCGAAAGGACTT-GTTCTGACCAATCCGA 496
BSNT_00059___ 497 CATATTACGGACATAGTGCTGATTTGACTGAGATCA-TTACTGAAGCCCA 545
|.||.||||||||....||.||||||||.|.| .|| |||...|||||||
RBAM_000360__ 497 CTTACTACGGACACGCCGCCGATTTGACCGCG-GCAGTTAACAAAGCCCA 545
BSNT_00059___ 546 -TCATTACGGGATTCCTGTTTTGGTCGATGAAGCGCATGGCGCACATTTT 594
||| |||||..|||||||..||||.|||||.||.|||||.||.||.|||
RBAM_000360__ 546 TTCA-TACGGCGTTCCTGTACTGGTGGATGAGGCTCATGGGGCTCACTTT 594
BSNT_00059___ 595 ATTTTAGGTGAGCCTTTTCCGGTCTCAGCTTTAAAAATGGGGGCAGATAT 644
.|.|||||..|||||||.|||...|||.|.||....|||||||||||...
RBAM_000360__ 595 GTGTTAGGCCAGCCTTTCCCGCCTTCATCATTGGCTATGGGGGCAGACGC 644
BSNT_00059___ 645 TGTTGTTCAGTCGGCCCACAAAACGTTGCCTGCCATGACGATGGGTTCTT 694
.||||||||.|||||.|||||||||.|.||.||.|||||||||||.||||
RBAM_000360__ 645 CGTTGTTCAATCGGCTCACAAAACGCTTCCGGCTATGACGATGGGGTCTT 694
BSNT_00059___ 695 ATTTGCATCTTAACAGCAGCTGCAGGATTAACAGGGATCGGGTGGCAGAG 744
|.||.|||.|.||||||| .|||.|||.||||.|||||..|..|..|.
RBAM_000360__ 695 ACTTTCATTTGAACAGCA---CCAGAATTGACAGAGATCGATTAACTTAT 741
BSNT_00059___ 745 TATTTAAACCGATTACAAAGCAGCAGCCCGTCTTATCCGATAATGGCTTC 794
|||.|||.|.|.||.|||||||||||||||||.||.|||||.|||||.||
RBAM_000360__ 742 TATGTAAGCAGTTTGCAAAGCAGCAGCCCGTCATACCCGATTATGGCATC 791
BSNT_00059___ 795 GTTAGATATTGCCCGCGCTTATGTACAGCATATTATAGAAGAACAAAAG- 843
.|||||||..||.|||||||||||.|||.|||||...|| |||||
RBAM_000360__ 792 TTTAGATACGGCGCGCGCTTATGTGCAGGATATTGCTGA-----AAAAGG 836
BSNT_00059___ 844 ----CTTTCTGACATTC---TGCAGCGGATACAAACACTTAAACAAACGT 886
|||.| |.||| ||.|||..||..|.|.|.|.||||.|| ||
RBAM_000360__ 837 GACACTTCC---CGTTCATATGGAGCACATTGAGAAAATCAAACGAA-GT 882
BSNT_00059___ 887 TT-GATTCA----CTTACAAATGCAGAAGCTGTT--AACCCTGCTAATCC 929
|| |..||| ||| ||.|| || |||||.
RBAM_000360__ 883 TTCGCATCAATTTCTT-------------CTATTGAAA------TAATCG 913
BSNT_00059___ 930 A------CTGATCAT--------CACGGACCCGCTGAAGCTCACAATTCG 965
| |.||| || ..||||||||.|.||..|.|...||||
RBAM_000360__ 914 AGCCTTCCGGAT-ATGGGCTGCGGGCGGACCCGTTAAAATTAATTCTTCG 962
BSNT_00059___ 966 TTCAAAACGCGGGCATTCTGGCTATACGCTGCAAAGCATATTAGAGCGTG 1015
.|||||.|.|||.|||||.||||||.|..|.|||.||||.||.|||.|||
RBAM_000360__ 963 GTCAAAGCTCGGACATTCCGGCTATTCATTACAACGCATTTTGGAGAGTG 1012
BSNT_00059___ 1016 CCAACATATTCACTGAGCTTGCTGATGAAAATCAAGTTCTGCTCGTTCT- 1064
...||||..|..|.|||||.|||||.||..|.|||||..|||||||.||
RBAM_000360__ 1013 AAGACATTGTTGCCGAGCTGGCTGACGAGTACCAAGTATTGCTCGTACTG 1062
BSNT_00059___ 1065 CCCATTGGGG---GGAAAACGGAGAATAAATGCTGAAACCATTAGAAGCA 1111
||.||.||.| || ||||..|||.|....|.||||.|.||||.||
RBAM_000360__ 1063 CCGATAGGCGGCCGG----CGGATGATAGAACAGGCAACCGTAAGAAACA 1108
BSNT_00059___ 1112 TTGATGAAAAGATTGAGAAAACGCCTCCGGATCAGGCGTTTGTTTCTGCA 1161
|..|..|.||..|.|||||.||.||.||.|||.| ..|||.
RBAM_000360__ 1109 TACAGCAGAAACTGGAGAATACACCGCCCGATAA----------ATTGCC 1148
BSNT_00059___ 1162 GAATG--GGGAG-TG--CAGCCTGTTACTGTCTTGCCTTATC-------- 1198
|.||| |.||| || || ||.|.|| ||.||||
RBAM_000360__ 1149 GGATGCCGTGAGATGGACA-----TTTCCGT----CCATATCGACACTTG 1189
BSNT_00059___ 1199 --------CAAAAAAGGTCTTACATTC----GTTTAAGAAAGA------- 1229
||||| |.|.||.| ||||||.|||.|
RBAM_000360__ 1190 AATACCCGCAAAA------TGAGATGCGGAAGTTTAAAAAAAAGCCTGCA 1233
BSNT_00059___ 1230 -ATATGTGGACTTTGAGGAAGCAA--CTGGCCGGC---TGAATGCAGAAG 1273
|||| ||..|| |||.|.||| ||.||||.|...
RBAM_000360__ 1234 GATAT-------------AAATAAGGCTGCCGGGCGCTTGCATGCGGGGA 1270
BSNT_00059___ 1274 ATATCATCCCTTATCCTCCGGGTATCCCGATGATTATGGCGGGAGAAAGA 1323
|.||.||.||||||||.|||||.||.|||.||||.||||..||||||.|.
RBAM_000360__ 1271 ACATTATTCCTTATCCGCCGGGAATTCCGCTGATCATGGACGGAGAACGG 1320
BSNT_00059___ 1324 ATAACAAAAGAAAGTGTGCAAAAGCTCAGCCGCTTGATCAGCATGAAAAC 1373
||||||.||||.|..||.||||||||...|||.||.|||.|||||.|.||
RBAM_000360__ 1321 ATAACAGAAGAGATCGTACAAAAGCTTTCCCGTTTAATCGGCATGGACAC 1370
BSNT_00059___ 1374 GCATGTTCAAGGGAATATGAAAATCAAA-GAGAAACAACTACTTGTTTAT 1422
||||.||||||| ..|| |.||| |.|.|||||.|||||||.|||
RBAM_000360__ 1371 GCATATTCAAGG---CTTG----TTAAACGGGGAACAATTACTTGTCTAT 1413
BSNT_00059___ 1423 ATAGAAGAGGAGAAATCATGA 1443
|||||||||||||||||||||
RBAM_000360__ 1414 ATAGAAGAGGAGAAATCATGA 1434
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