Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00072 and RBAM_000470

See Amino acid alignment / Visit BSNT_00072 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:50
# Commandline: needle
#    -asequence dna-align/BSNT_00072___metG.1.9828.seq
#    -bsequence dna-align/RBAM_000470___metS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00072___metG-RBAM_000470___metS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00072___metG-RBAM_000470___metS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00072___metG
# 2: RBAM_000470___metS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2000
# Identity:    1619/2000 (80.9%)
# Similarity:  1619/2000 (80.9%)
# Gaps:          13/2000 ( 0.6%)
# Score: 6502.5
# 
#
#=======================================

BSNT_00072___      1 ATGCCGCAAGAAAACAATACATTTTACATTACAACACCGATTTATTATCC     50
                     |||||||||||.||.|||||.|||||.||||||||.|||||.||||||||
RBAM_000470__      1 ATGCCGCAAGACAATAATACTTTTTATATTACAACCCCGATATATTATCC     50

BSNT_00072___     51 GAGCGGAAAATTACATATCGGCCATGCATATACGACAGTCGCGGGAGATG    100
                     |||||||||||||||||||||||||||.|||||.||.||.||.||.||||
RBAM_000470__     51 GAGCGGAAAATTACATATCGGCCATGCTTATACTACCGTGGCCGGCGATG    100

BSNT_00072___    101 CAATGGCACGTTACAAAAGACTAAAAGGGTTCGATGTTCGCTATTTAACG    150
                     |.|||||.||||||||||||.|||||||.||.||.||.|||||.|||||.
RBAM_000470__    101 CGATGGCGCGTTACAAAAGATTAAAAGGATTTGACGTACGCTACTTAACC    150

BSNT_00072___    151 GGAACGGACGAGCATGGACAAAAGATCCAGCAAAAAGCTGAACAGGAAAA    200
                     ||||||||.|||||.|||||.||.||||||||.|||||.||..|.||.||
RBAM_000470__    151 GGAACGGATGAGCACGGACAGAAAATCCAGCAGAAAGCGGAGGAAGAGAA    200

BSNT_00072___    201 CATTACACCTCAGGAGTATGTGGATCGCGCAGCGGCAGATATTCAAAAAC    250
                     .||.||.|||||.|..|||||.|||||.||||..||.||.||.|||||||
RBAM_000470__    201 TATCACGCCTCAAGCTTATGTAGATCGTGCAGTTGCTGAAATCCAAAAAC    250

BSNT_00072___    251 TGTGGAAGCAGCTTGAAATCTCAAACGACGACTTTATCCGCACGACAGAA    300
                     |.|||||||||||.||.||.||..||||.||.||.|||||.|||||.|||
RBAM_000470__    251 TATGGAAGCAGCTCGACATTTCTCACGATGATTTCATCCGGACGACGGAA    300

BSNT_00072___    301 AAACGGCATAAAGTTGTCATTGAAAAAGTGTTTCAAAAGCTTCTTGATAA    350
                     |..|||||.||||...|.||.||.||||||||||||||.|||||||||||
RBAM_000470__    301 AGCCGGCACAAAGAAATTATCGAGAAAGTGTTTCAAAAACTTCTTGATAA    350

BSNT_00072___    351 CGGGGACATCTATCTTGATGAGTATGAAGGCTGGTACAGCATCCCTGATG    400
                     .||.|||||.||.||.|||||||||||.||||||||||||||||||||||
RBAM_000470__    351 TGGTGACATTTACCTGGATGAGTATGAGGGCTGGTACAGCATCCCTGATG    400

BSNT_00072___    401 AAACGTTCTACACGGAAACTCAGCTCGTTGATATTGAGCGGAATGAAAAG    450
                     ||||.|||||.||||||||.|||||.||.|||.|.||..|.|||||.|||
RBAM_000470__    401 AAACATTCTATACGGAAACACAGCTGGTGGATGTGGAAAGAAATGAGAAG    450

BSNT_00072___    451 GGAGAGGTCATCGGCGGAAAAAGCCCTGACAGCGGTCACCCAGTTGAATT    500
                     ||.|||||..||||||||||||||||.||||||||.||.||.||.|||||
RBAM_000470__    451 GGTGAGGTTGTCGGCGGAAAAAGCCCGGACAGCGGCCATCCGGTCGAATT    500

BSNT_00072___    501 GATCAAAGAGGAATCTTATTTCTTCCGCATGGGGAAATACGCGGATCGTC    550
                     .|||||||||||.||.||.||||||||||||.|.||||||||.||.||.|
RBAM_000470__    501 AATCAAAGAGGAGTCATACTTCTTCCGCATGAGCAAATACGCAGACCGCC    550

BSNT_00072___    551 TTCTGAAATACTATGAAGAAAACCCGACATTCATTCAGCCAGAATCACGC    600
                     |.|||||.|..|||||.|||||.||..|.|||||.|||||.|||||||||
RBAM_000470__    551 TGCTGAAGTTTTATGAGGAAAATCCTTCTTTCATCCAGCCTGAATCACGC    600

BSNT_00072___    601 AAAAACGAAATGATTAATAACTTTATCAAACCTGGACTTGAGGATTTGGC    650
                     |||||.|||||||||||.|||||.||.|||||.||.|||||.||||||||
RBAM_000470__    601 AAAAATGAAATGATTAACAACTTCATTAAACCGGGGCTTGAAGATTTGGC    650

BSNT_00072___    651 AGTATCACGTACCACTTTTGATTGGGGCGTGAAGGTGCCGGAAAATCCAA    700
                     .||.||..|.||.||.||.||.||||||||.||.|||||||.||||||.|
RBAM_000470__    651 CGTTTCCAGAACGACGTTCGACTGGGGCGTAAAAGTGCCGGGAAATCCGA    700

BSNT_00072___    701 AGCATGTTGTATATGTTTGGATTGACGCACTATTTAACTATTTAACGGCA    750
                     |||||||.||.|||||.||||||||||||||.||.||||||.||||.||.
RBAM_000470__    701 AGCATGTCGTGTATGTATGGATTGACGCACTGTTCAACTATATAACAGCG    750

BSNT_00072___    751 CTCGGTTATGATACAGAAAATGATGAGCTTTATCAAAAA-TATTGGCCTG    799
                     ||||||||.|||||.||||||||||||||||| |||||| ||.|||||.|
RBAM_000470__    751 CTCGGTTACGATACGGAAAATGATGAGCTTTA-CAAAAAGTACTGGCCGG    799

BSNT_00072___    800 CCGATGTTCATTTAGTCGGTAAGGAGATTGTACGATTCCATACTATTTAC    849
                     |.||.||.|||.|.||||||||.||.|||||.||.||.|||||.||||||
RBAM_000470__    800 CTGACGTCCATCTTGTCGGTAAAGAAATTGTCCGTTTTCATACCATTTAC    849

BSNT_00072___    850 TGGCCAATTATGCTGATGGCGCTGGATCTTCCGCTGCCAAAGCAAGTATT    899
                     |||||.|||||||||||||||||.|||||.||||||||.||||||||.||
RBAM_000470__    850 TGGCCGATTATGCTGATGGCGCTTGATCTCCCGCTGCCTAAGCAAGTCTT    899

BSNT_00072___    900 CGCGCATGGCTGGCTTTTGATGAAAGACGGAAAAATGTCGAAATCAAAAG    949
                     |||||||||||||.|.||||||||||||||||||||||||||||||||||
RBAM_000470__    900 CGCGCATGGCTGGTTATTGATGAAAGACGGAAAAATGTCGAAATCAAAAG    949

BSNT_00072___    950 GAAACGTTGTAGATCCGGTTACATTAATTGAGCGCTATGGTTTAGACGAG    999
                     ||||.|||||.||||||||.||.||||||||.|||||.||.||.||.||.
RBAM_000470__    950 GAAATGTTGTTGATCCGGTAACGTTAATTGAACGCTACGGCTTGGATGAA    999

BSNT_00072___   1000 CTTCGCTATTACCTGCTTCGCGAAGTGCCGTTCGGATCTGACGGTGTTTT   1049
                     ||||||||||||||||||||||||||.||||||||.||.||||||||.||
RBAM_000470__   1000 CTTCGCTATTACCTGCTTCGCGAAGTACCGTTCGGTTCAGACGGTGTCTT   1049

BSNT_00072___   1050 CACGCCGGAAGGATTTGTTGAGCGAATCAACTATGATTTAGCGAATGATT   1099
                     .|||||||||||.||.||.||.||.||.||.|||||.||.|||||.||.|
RBAM_000470__   1050 TACGCCGGAAGGTTTCGTAGAACGGATTAATTATGACTTGGCGAACGACT   1099

BSNT_00072___   1100 TAGGAAATCTATTGAATCGTACTGTTGCGATGATCAATAAGTATTTTGAC   1149
                     |||||||.||..||||||||||.||.||.||||||.|.||.|||||||||
RBAM_000470__   1100 TAGGAAACCTTCTGAATCGTACAGTCGCAATGATCCAAAAATATTTTGAC   1149

BSNT_00072___   1150 GGACAAATTGGTTCTTACAAAGGTGCTGTTACGGAATTTGA-CCAAACGC   1198
                     ||..|.||||||||.||..||||...|||.||.||.||||| .||.| ||
RBAM_000470__   1150 GGCGAGATTGGTTCATATGAAGGAAATGTGACCGATTTTGATTCAGA-GC   1198

BSNT_00072___   1199 TCACTTCTGTTGCTGAAGAAACAGTGAAAGCTTATGAGAAAGCAATGGAA   1248
                     |..|||||||.||.|..|||||.||.|||||||||||.||.|||||||||
RBAM_000470__   1199 TTTCTTCTGTAGCCGGTGAAACGGTTAAAGCTTATGAAAAGGCAATGGAA   1248

BSNT_00072___   1249 AATATGGAGTTCTCGGTAGCACTTTCGACTTTATGGCAGCTCATCAGCCG   1298
                     ||.||||||||.||.||.||..|.||.||..|||||||..|.||||||||
RBAM_000470__   1249 AACATGGAGTTTTCAGTCGCTTTATCAACGCTATGGCAATTAATCAGCCG   1298

BSNT_00072___   1299 CACAAACAAATACATTGATGAGACAGCTCCATGGGTGCTTGCGAAAGATC   1348
                     .||.|||||.||.||||||||.||.|||||.|||||||||||.|||||||
RBAM_000470__   1299 TACGAACAAGTATATTGATGAAACTGCTCCGTGGGTGCTTGCTAAAGATC   1348

BSNT_00072___   1349 CGGCAAAAGAAGAAGAATTGCGATCAGTTATGTATCATCTCGCTGAATCA   1398
                     .||.|||||||.|||||||.||.||.||.|||||||||.|.||||||||.
RBAM_000470__   1349 AGGAAAAAGAAAAAGAATTACGTTCTGTCATGTATCATTTAGCTGAATCT   1398

BSNT_00072___   1399 TTGCGTATTTCAGCGGTACTGCTTCAGCCATTCTTAACAAAAACACCTGA   1448
                     ||.|||||.|||||.|||.||||.|||||.|||||.|||.||||.|||||
RBAM_000470__   1399 TTACGTATCTCAGCCGTATTGCTCCAGCCTTTCTTGACACAAACGCCTGA   1448

BSNT_00072___   1449 AAAAATGTTCGAGCAGCTAGGCATTACTGATGACTCTCTAAAAGCTTGGG   1498
                     |||||||||.|..|||||.||..||...|||.|.|||||.|||||.||||
RBAM_000470__   1449 AAAAATGTTTGCCCAGCTCGGAGTTGAGGATCAGTCTCTTAAAGCATGGG   1498

BSNT_00072___   1499 ACAGCATTACAG-CTTTCGGCCAGCTGAAAGATACAAAAGTACAAAAAGG   1547
                     |||||||| ||| |.||||||||..||||..|..|.|||||..|||||||
RBAM_000470__   1499 ACAGCATT-CAGACATTCGGCCAATTGAAGAACGCGAAAGTGAAAAAAGG   1547

BSNT_00072___   1548 CGAGCCGTTGTTCCCTCGTTTAGAGGCAGAAGAAGAAATTGCTTACATCA   1597
                     .||.|||.|.|||||||||.|.||.||.|||||.|||.|.||||||||||
RBAM_000470__   1548 GGAACCGCTTTTCCCTCGTCTTGAAGCTGAAGAGGAAGTAGCTTACATCA   1597

BSNT_00072___   1598 AAGGGAAAATGCAAGGTTCGGCACCAGCGAAAGAAGAAACAAGAGAAGAA   1647
                     |....|||||||||||..|.||.||.||.|||||||||  ||| |..|||
RBAM_000470__   1598 AGCAAAAAATGCAAGGAACTGCTCCTGCTAAAGAAGAA--AAG-GCGGAA   1644

BSNT_00072___   1648 GAGCCGCAAGAGGTCGATCGTTTACCTGAAATTACGATTGATCAATTCAT   1697
                     |||||||||||.|..||.|||.|.||||||||||||.||||||||||.||
RBAM_000470__   1645 GAGCCGCAAGAAGCAGAGCGTCTTCCTGAAATTACGTTTGATCAATTTAT   1694

BSNT_00072___   1698 GGATGTAGAGCTTCGCGTAGCTGAGGTCATTG-AGGCAGAGCCAGTGAAA   1746
                     ||||..|||.||||||||.||.||.||| ||| ..||||||||.||||||
RBAM_000470__   1695 GGATACAGAACTTCGCGTCGCAGAAGTC-TTGTCCGCAGAGCCGGTGAAA   1743

BSNT_00072___   1747 AAAGCAGACCGTTTATTGAAGCTGCAGCTTGATCTTGGTTTTGAAAAGCG   1796
                     ||||||||.||..|..||||..||||..|||||||.||.||||||.||||
RBAM_000470__   1744 AAAGCAGATCGGCTGCTGAAATTGCAAATTGATCTGGGCTTTGAACAGCG   1793

BSNT_00072___   1797 CCAAGTGGTATCCGGCATTGCGAAGCATTATACGCCTGAAGAGCTTGTTG   1846
                     ||||||.|||||.||.||.|||||||||||.||.||.||..|||||||.|
RBAM_000470__   1794 CCAAGTTGTATCAGGTATCGCGAAGCATTACACACCGGATCAGCTTGTGG   1843

BSNT_00072___   1847 GAAAAAAACTCGTTTGTGTAACAAATCTAAAACCGGTTAAACTCAGAGGA   1896
                     |||..||..||.||||||||||.||||||||||||||.|||||.|||||.
RBAM_000470__   1844 GAATGAAGATCATTTGTGTAACGAATCTAAAACCGGTAAAACTGAGAGGC   1893

BSNT_00072___   1897 GAGCTTTCTCAAGGTATGATCCTTGCAGGAGAAGCAGACGGCGT-TTTAA   1945
                     ||||||||||||||.|||||.||.|||||||||.|.|||||||| .||||
RBAM_000470__   1894 GAGCTTTCTCAAGGAATGATACTGGCAGGAGAATCGGACGGCGTACTTAA   1943

BSNT_00072___   1946 AGGTCGTGTCTATCGATCAGTCGTTACCAAAAGGCACAAGAATTAAATAA   1995
                     | ||.||..||.||||.|||||.|||||.||||||||..|||||||||||
RBAM_000470__   1944 A-GTTGTAGCTGTCGACCAGTCATTACCGAAAGGCACTCGAATTAAATAA   1992


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