Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00079 and RBAM_000520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_00079___yabG.1.9828.seq
# -bsequence dna-align/RBAM_000520___yabG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00079___yabG-RBAM_000520___yabG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00079___yabG-RBAM_000520___yabG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00079___yabG
# 2: RBAM_000520___yabG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 884
# Identity: 707/884 (80.0%)
# Similarity: 707/884 (80.0%)
# Gaps: 19/884 ( 2.1%)
# Score: 2828.5
#
#
#=======================================
BSNT_00079___ 1 GTGCAATTTCAAATAGGGGATATGGTAGCCAGAAAATCCTATCAGATGGA 50
|||||||||||||||||.||||||||||||||.|||||||||||.|||||
RBAM_000520__ 1 GTGCAATTTCAAATAGGAGATATGGTAGCCAGGAAATCCTATCAAATGGA 50
BSNT_00079___ 51 TGTTTTGTTTCGAATTATAGGAATAGAGCAAACAAGCAAAGGAAATTCAA 100
||||||.|||||.|||||.||.|||||||||||||||||.||||||||||
RBAM_000520__ 51 TGTTTTATTTCGCATTATCGGTATAGAGCAAACAAGCAACGGAAATTCAA 100
BSNT_00079___ 101 TTGCCATTTTGCATGGAGATGAAGTCAGGCTGATTGCTGATTCGGATTTT 150
|||||||..|||||||.||.||||||||..|||||||.|||.|.||||||
RBAM_000520__ 101 TTGCCATCCTGCATGGTGACGAAGTCAGATTGATTGCGGATGCTGATTTT 150
BSNT_00079___ 151 TCTGATCTGGTGGCAGTGAAAAAGGATGAGCAG---ATGATGCGGAAA-A 196
||||||.|||.|.|.||.|.|||.||.||.||| |||| |||| |
RBAM_000520__ 151 TCTGATTTGGAGCCTGTCAGAAAAGACGAACAGGCCATGA----GAAAGA 196
BSNT_00079___ 197 AGAAAGATGAGAGCAGAATGAATGAGTCGCTCGAATTGCTCCGCCAAGAT 246
|.|.||||||.|||||.||||||||.||.|||||..||||||||||.|||
RBAM_000520__ 197 AAAGAGATGAAAGCAGGATGAATGAATCTCTCGAGCTGCTCCGCCAGGAT 246
BSNT_00079___ 247 TATAAGCTGCTCAGAGAAAAGCAGGAGTACTATGCGACAAGCCAATATCA 296
|||||||||||..|.|||||.|||||.||.||||||||||..||||||||
RBAM_000520__ 247 TATAAGCTGCTTCGGGAAAAACAGGAATATTATGCGACAAATCAATATCA 296
BSNT_00079___ 297 GCATCAGGAGCATTATTTCCATATGCCGGGCAAAGTGCTTCATCTGGATG 346
||||||||||||.||.||.||||||||.||.||.||..|.||||||||.|
RBAM_000520__ 297 GCATCAGGAGCACTACTTTCATATGCCCGGAAAGGTATTGCATCTGGACG 346
BSNT_00079___ 347 GTGACGAAGCATATCTGAAAAAATGCCTGAATGTCTATAAAAAAATTGGA 396
|.||.||.||.|||.|||||||.||||||||..|.|||.|||||||.||.
RBAM_000520__ 347 GCGATGAGGCCTATTTGAAAAAGTGCCTGAACTTTTATGAAAAAATCGGT 396
BSNT_00079___ 397 GTGCCGGTCTATGGCATCCATTGCCATGAAAAGAAAATGTCTGCTTCTAT 446
||||||||.||.||.||.|||||||||||.||.||||||.|.||.||.||
RBAM_000520__ 397 GTGCCGGTATACGGAATTCATTGCCATGAGAAAAAAATGCCGGCATCAAT 446
BSNT_00079___ 447 TGAAGAATTGCTCGACAAATATCGACCTGATATCCTGGTGATCACAGGGC 496
|||.||..||||.||.|||||..|.||.|||||..|.||.|||||.||.|
RBAM_000520__ 447 TGACGAGCTGCTTGATAAATACAGGCCGGATATTTTAGTCATCACCGGCC 496
BSNT_00079___ 497 ATGATGCGTATTCGAAGCAAAAGGGCGGCATTGATGATTTGAATGCGTAC 546
|||||||.|||||.|||||.|||||.|||.|..|.|||||.|..||.|||
RBAM_000520__ 497 ATGATGCATATTCCAAGCATAAGGGAGGCGTGAACGATTTAAGCGCCTAC 546
BSNT_00079___ 547 AGACATTCTAAGCACTTTGTTGAAACTGTTCAAACAGC---CCGAAAAAA 593
||.|||||.||.||||||||.|||||.|||||||.||| .||.|||
RBAM_000520__ 547 AGGCATTCCAAACACTTTGTCGAAACCGTTCAAAGAGCGAGGCGTAAA-- 594
BSNT_00079___ 594 GATCCCTCACTTAGATCAGCTTGTTATTTTTGCGGGGGCCTGCCAATCCC 643
.|.|||||.||.||||||||.||.||.||.||||||||.||||||||.|
RBAM_000520__ 595 -GTACCTCATTTGGATCAGCTGGTCATATTCGCGGGGGCGTGCCAATCTC 643
BSNT_00079___ 644 ATTTTGAATCACTCATCAGAGCGGGTGCGAATTTTGCAAGTTCACCGTCA 693
||||.||.||..|.|||||||||||.||||||||.||||||||.||||||
RBAM_000520__ 644 ATTTCGAGTCTTTAATCAGAGCGGGCGCGAATTTCGCAAGTTCGCCGTCA 693
BSNT_00079___ 694 AGAGTCAATATTCATGCGCTTGATCCGGTATATATCGTCGCGAAGATCAG 743
.|.||||||||.||.||||||||.|||||||||||.||||||||.|||||
RBAM_000520__ 694 CGCGTCAATATCCACGCGCTTGACCCGGTATATATTGTCGCGAAAATCAG 743
BSNT_00079___ 744 CTTTACGCCGTTTATGGAACGGATTAATGTATGGGAAGTGCTCCGTAATA 793
|||.||.|||||||||||.|||||.|||||||||||.||.||..|.||||
RBAM_000520__ 744 CTTCACCCCGTTTATGGAGCGGATCAATGTATGGGATGTCCTGAGAAATA 793
BSNT_00079___ 794 CGCTGACAAGAGAGAAAGGGCTTGGAGGTATTGAAAC-AAGAGGAGTTCT 842
|||||||.||||||||||||||.|||||.|||||||| ||| ||.||.||
RBAM_000520__ 794 CGCTGACGAGAGAGAAAGGGCTGGGAGGAATTGAAACGAAG-GGTGTGCT 842
BSNT_00079___ 843 GAGAATTGGTATGCCTTATAAGTCCAATTAA--- 873
|.|..|.||||||||.|||||.||.|||..|
RBAM_000520__ 843 GCGTGTCGGTATGCCGTATAAATCAAATGGATGA 876
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