Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00081 and RBAM_000540

See Amino acid alignment / Visit BSNT_00081 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:51
# Commandline: needle
#    -asequence dna-align/BSNT_00081.1.9828.seq
#    -bsequence dna-align/RBAM_000540___sspF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00081-RBAM_000540___sspF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00081-RBAM_000540___sspF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00081
# 2: RBAM_000540___sspF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 189
# Identity:     138/189 (73.0%)
# Similarity:   138/189 (73.0%)
# Gaps:          24/189 (12.7%)
# Score: 571.0
# 
#
#=======================================

BSNT_00081         1 ---------------------ATGTCAGATGAGTTTAAATATGAGCTGGC     29
                                          ||||||||||||||.||||||||||||||
RBAM_000540__      1 TTGGGCAGACGTCGTGGAGTTATGTCAGATGAGTTCAAATATGAGCTGGC     50

BSNT_00081        30 TAAAGACCTTGGTTTTTATGACACAGTAAAAAATGGCGGCTGGGGCGAAA     79
                     .||.||||||||||||||.||.||.||.|||||.|..||||||||.|..|
RBAM_000540__     51 GAAGGACCTTGGTTTTTACGATACGGTGAAAAACGAGGGCTGGGGAGGCA    100

BSNT_00081        80 TTCGGGCTCGCGATGCCGGTAACATGGTGAAGCGTGCTATTGAAATCGCC    129
                     |||||||.||.||.|||||.||.|||||.||.||.||.|||||.||.|||
RBAM_000540__    101 TTCGGGCGCGTGACGCCGGGAATATGGTAAAACGCGCGATTGAGATTGCC    150

BSNT_00081       130 GAACAGCAAAT---GGCTCAGAATCAGAATAACCGATAA    165
                     ||||||||.||   |||||||||.||.||||||||||||
RBAM_000540__    151 GAACAGCAGATGGCGGCTCAGAACCAAAATAACCGATAA    189


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.