Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00115 and RBAM_000750

See Amino acid alignment / Visit BSNT_00115 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:54
# Commandline: needle
#    -asequence dna-align/BSNT_00115___spoIIE.1.9828.seq
#    -bsequence dna-align/RBAM_000750___spoIIE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00115___spoIIE-RBAM_000750___spoIIE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00115___spoIIE-RBAM_000750___spoIIE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00115___spoIIE
# 2: RBAM_000750___spoIIE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2524
# Identity:    2004/2524 (79.4%)
# Similarity:  2004/2524 (79.4%)
# Gaps:          65/2524 ( 2.6%)
# Score: 7925.0
# 
#
#=======================================

BSNT_00115___      1 ATGAGAGGAATGGAAAAAGCAGAAAGAAGAGTGAACGGGCCAATGGCGGG     50
                              |||||||||||.||||||||||||||||||||.||||||||
RBAM_000750__      1 ---------ATGGAAAAAGCGGAAAGAAGAGTGAACGGGCCGATGGCGGG     41

BSNT_00115___     51 ACAAGCTTTGGAAAAACTCCAATCGTTTTTT-AACAGG-GGCACGAAGCT     98
                     |||||||.||||||||||.|||||||||||| ||.||| ||||  |||| 
RBAM_000750__     42 ACAAGCTCTGGAAAAACTGCAATCGTTTTTTGAAAAGGCGGCA--AAGC-     88

BSNT_00115___     99 GGTGAC---TCATCATTTGCATTCACTGTTTTTCTATAAAGGATTCATTT    145
                       |.||   .|||||...|||||||||.|||||||||||.||.|||||||
RBAM_000750__     89 --TTACAGTCCATCAAGCGCATTCACTTTTTTTCTATAAGGGTTTCATTT    136

BSNT_00115___    146 ATGTTGTCATCGGATTTTTGCTTGGACGGGCTTTCATATTATCCGAGGTG    195
                     ||||.||.|||||.|||||.|||||||||||||||||||||||.|||||.
RBAM_000750__    137 ATGTCGTGATCGGTTTTTTACTTGGACGGGCTTTCATATTATCTGAGGTT    186

BSNT_00115___    196 CTTCCTTTCGCACTTCCTTTCTTTGGAGCGATGCTTCTAATCAGAAGAGA    245
                     |||||.||.||.||.||.||.||.||||||||||||.|.||.||||||||
RBAM_000750__    187 CTTCCGTTTGCGCTGCCGTTTTTCGGAGCGATGCTTTTGATTAGAAGAGA    236

BSNT_00115___    246 CAAAGCGTTTTATGCGGTTTTGGCTG----TGCTTGCAGGTGCGCTGACC    291
                     .|||||.||.|||||    |||.|||    |.|||||.||.||..|.|||
RBAM_000750__    237 TAAAGCCTTCTATGC----TTGTCTGTCTTTACTTGCGGGCGCTTTAACC    282

BSNT_00115___    292 ATATCTCCAAAGCACTCATTGCTCATACTGGCGGCATTGCTGGCATTCTT    341
                     ||.||.||.||.|||||.||..|.||.||..|.||.|   ||||..||||
RBAM_000750__    283 ATTTCGCCGAAACACTCTTTATTGATTCTCACAGCTT---TGGCCGTCTT    329

BSNT_00115___    342 C---GTATTTTCTAAAGT-GGCTGCCTTCAT-TACCG---ACGATCGTGT    383
                     |   .|||||||.|||.| ||     |.||| ||.||   |.||.||.||
RBAM_000750__    330 CACTTTATTTTCAAAAATCGG-----TACATATATCGTGCAGGACCGGGT    374

BSNT_00115___    384 TAAAGCGCTCCCGATTGTCGTGTTCTTCTCCATGGCTGCAGCAAGAGCCG    433
                     .||...|||.|||||.||.|||||.|||||.||||||||.||.|||..||
RBAM_000750__    375 GAAGATGCTGCCGATCGTGGTGTTTTTCTCTATGGCTGCCGCGAGAATCG    424

BSNT_00115___    434 GGTTTGTTTATGCCCAAAATGGCGTATTTACAACCTATGATTATGTAATG    483
                     |.|||||||||....|||..||||..|||||.||||||||||||||.|||
RBAM_000750__    425 GATTTGTTTATTTTGAAAGCGGCGCTTTTACCACCTATGATTATGTGATG    474

BSNT_00115___    484 GCTATCGTTGAGGCTGGACTATCGTTTATCTTAACACTGATTTTCCTTCA    533
                     |||.|.||.|||||.||.||..|.|||||.||.||.|||||.||..|.||
RBAM_000750__    475 GCTGTTGTCGAGGCGGGCCTGGCCTTTATTTTGACGCTGATCTTTTTACA    524

BSNT_00115___    534 GAGCCTTCCGATTTTTACTGTGAAAAAAGTGAAACAATCATTAAAAATAG    583
                     .|||||.||||||||.||..|.|||||||||||.|||||.||||||||||
RBAM_000750__    525 AAGCCTGCCGATTTTCACGATCAAAAAAGTGAAGCAATCGTTAAAAATAG    574

BSNT_00115___    584 AGGAAATCATTTGCTTTATGATTCTT-ATTGCCTCTGTTTTAACGGGGCT    632
                     |.||||||||.||.||||||| |||| ||.||.||.||||||||.|||||
RBAM_000750__    575 AAGAAATCATCTGTTTTATGA-TCTTGATCGCATCCGTTTTAACCGGGCT    623

BSNT_00115___    633 GGCTGGCTTGTCCTACCAAGGGATGCAGGCAGAACATATATTGGCTCGTT    682
                     .||.||..|.||.|..||.||.||||||||.||||||||..||||.||.|
RBAM_000750__    624 TGCGGGTGTTTCATTTCAGGGAATGCAGGCTGAACATATCCTGGCCCGCT    673

BSNT_00115___    683 ATGTTGTGTTGAGTTTTTCCTTTATTGGCGGAGCAAGCATCGGCTGTACG    732
                     ||||.|||.||||||||||||||.|.|||||.||||||||||||||||||
RBAM_000750__    674 ATGTCGTGCTGAGTTTTTCCTTTGTCGGCGGGGCAAGCATCGGCTGTACG    723

BSNT_00115___    733 GTTGGGGTTGTGACCGGCCTGATTCT-TGGCTTGGCGAATATCGGAAACC    781
                     ||.||.|||||||||||.|||||.|| .||||| |||||||||||.||||
RBAM_000750__    724 GTCGGTGTTGTGACCGGACTGATCCTCGGGCTT-GCGAATATCGGGAACC    772

BSNT_00115___    782 TATATCAAATGAGTCTGCTTGCTTTTTCC-GGTTTATTGGGCGGTTTGCT    830
                     |.||||||||||||||||||||.|||||| ||.||.|| |||||..||||
RBAM_000750__    773 TCTATCAAATGAGTCTGCTTGCGTTTTCCGGGCTTCTT-GGCGGGCTGCT    821

BSNT_00115___    831 GAAGGAAGGGAAAAAAGCGGGTGCAGCAATTGGTT---TGATCGTTGGAT    877
                     |||.|||||.||.|||||.||.||.|||.|.||.|   |||||   ||.|
RBAM_000750__    822 GAAAGAAGGAAAGAAAGCCGGAGCCGCAGTCGGGTTAGTGATC---GGCT    868

BSNT_00115___    878 CACTTCTTATATCTTTATATGGTGAAGGCTCTGCCGGTCTGATGACAACG    927
                     ||||.||.||.||.||||||||.|||||.||||||||..|.|||||.||.
RBAM_000750__    869 CACTGCTGATTTCATTATATGGAGAAGGGTCTGCCGGATTAATGACCACT    918

BSNT_00115___    928 CTCTATGAGTCATTAATCGCAGTCGGCCTGTTTTTGCTCACACCTCAATC    977
                     ||.|||||.||.||.||.||.||.|...||||||||.|.||.||.|||||
RBAM_000750__    919 CTTTATGAATCTTTGATTGCCGTTGTTTTGTTTTTGATTACGCCCCAATC    968

BSNT_00115___    978 TATTACGAGGAAAGTGGCGAGATATATTCCGGGAACTGTCGAGCATCTTC   1027
                     .|||||||..||.||||||.||||.||.|||||.||||..|||||...||
RBAM_000750__    969 GATTACGAAAAAGGTGGCGCGATACATACCGGGCACTGCTGAGCACAGTC   1018

BSNT_00115___   1028 AAGAGCAACAGCAATACGCTAGAAAAATCCGTGATGTCACTGCTCAGAAG   1077
                     |.||.||.|||||.|||||.||.||||||.|.||||||||.||.|||||.
RBAM_000750__   1019 AGGAACAGCAGCAGTACGCGAGGAAAATCAGAGATGTCACCGCCCAGAAA   1068

BSNT_00115___   1078 GTAGACCAATTCTCCAATGTATTTCACGCGCTGTCTGAAAGCTTTGCAAC   1127
                     ||||||||.|||||||||||.|||||.||..||||.||.|||||.||.||
RBAM_000750__   1069 GTAGACCAGTTCTCCAATGTGTTTCATGCCTTGTCGGAGAGCTTCGCCAC   1118

BSNT_00115___   1128 CTTTTATCAAG----CATCAGACGAACAGACAGATGACAGCGAAGTTGAT   1173
                     ||||.||| ||    |.||.||.||.|||.|.||.||..|.|||||.|||
RBAM_000750__   1119 CTTTCATC-AGACGTCTTCCGATGAGCAGGCGGAAGAAGGGGAAGTGGAT   1167

BSNT_00115___   1174 CTGTTCTTAAGCAAAATCACGGAGCATTCCTGCCAGACGTGCTACAAGAA   1223
                     ||.||.||||||||||||||.||||||||||||||..|.|||||.|||||
RBAM_000750__   1168 CTCTTTTTAAGCAAAATCACCGAGCATTCCTGCCAATCCTGCTATAAGAA   1217

BSNT_00115___   1224 AAACAGGTGCTGGGTACAGAACTTTGATAAAACATATGACTTAATGAAAC   1273
                     ||.||..||||||||.||.|||||||||||||||||||||||||||||||
RBAM_000750__   1218 AAGCAAATGCTGGGTTCAAAACTTTGATAAAACATATGACTTAATGAAAC   1267

BSNT_00115___   1274 AAGTTATGCTTGAAACAGAGGAAAAAGAATATGCATCAAACCGAAGGCTG   1323
                     |||||||||.|||||||||.||||||.|.|||||.||||||||.||..|.
RBAM_000750__   1268 AAGTTATGCATGAAACAGAAGAAAAACAGTATGCCTCAAACCGCAGATTA   1317

BSNT_00115___   1324 AAAAAAGAGTTTCAACAGTATTGTTCTAAATCCAAGCAGGTTGAAGAGCT   1373
                     |||||.||||||||||||.|.|||||.|||||||..|||||.||||||||
RBAM_000750__   1318 AAAAAGGAGTTTCAACAGCACTGTTCCAAATCCAGACAGGTGGAAGAGCT   1367

BSNT_00115___   1374 GATTGAGGATGAGCTCGCACATCATCATGCCCATTTGACACTCAAGAAAA   1423
                     |||||||||.||.||.||.||.|||||.||||||.|||||||.||||.||
RBAM_000750__   1368 GATTGAGGACGAACTTGCCCACCATCACGCCCATCTGACACTGAAGAGAA   1417

BSNT_00115___   1424 AAGTCCAAGACAGCAGGCGCCTTGTTGCTGAACAGCTTTTAGGCGTTTCT   1473
                     ||||.||.||||||||..|.||||||||.||.|||||.||.||.||||||
RBAM_000750__   1418 AAGTTCAGGACAGCAGAAGGCTTGTTGCCGAGCAGCTGTTGGGGGTTTCT   1467

BSNT_00115___   1474 GAGGTTATGGCCGACTTTTCTCGGGAAATAAAAAGAGAGCGAGAACAGCA   1523
                     |||||.|||||.|||||||||||||||||||||.|.|||.|.||.|||||
RBAM_000750__   1468 GAGGTCATGGCGGACTTTTCTCGGGAAATAAAACGGGAGAGGGAGCAGCA   1517

BSNT_00115___   1524 CTTTCTGCAGGAAGAGCAAATCATAGAAGCGCTTCAGCATTTCGGAATTG   1573
                     .|||.|.||||||||.|||||.|||||.||||||||||||||.|||||.|
RBAM_000750__   1518 TTTTATTCAGGAAGAACAAATGATAGAGGCGCTTCAGCATTTTGGAATCG   1567

BSNT_00115___   1574 AGATTCAGCATGTCGAGATCTATAGTCTT-GAACAAGGAAATATCGATAT   1622
                     |||||||||||||||||||.||.|| ||| ||.||.||.|||||.|||||
RBAM_000750__   1568 AGATTCAGCATGTCGAGATATACAG-CTTGGAGCAGGGCAATATTGATAT   1616

BSNT_00115___   1623 TGAAATGACCATTCCGTTCAGC---GGACATGGAGAAAGTGAAAAAATCA   1669
                     .||||||||.||.|||||||||   |||||.||.||.|||||.|||||.|
RBAM_000750__   1617 CGAAATGACAATCCCGTTCAGCGGAGGACACGGCGAGAGTGAGAAAATTA   1666

BSNT_00115___   1670 TTGCTCCTATGCTTTCTGACATTCTGGAGGAACAAATTCTTGTGAAAGCC   1719
                     |.||.||.|||||.|||||||||||.|||||.||.||.|||||.|||..|
RBAM_000750__   1667 TCGCCCCGATGCTGTCTGACATTCTTGAGGAGCAGATACTTGTCAAAAGC   1716

BSNT_00115___   1720 GAACAGCACTCTCCGCATCCGAATGGATACAGCCATGTCGCCTTTGGATC   1769
                     |||||||||||..|.|||||||||||.||||||||||||||.||.||.||
RBAM_000750__   1717 GAACAGCACTCGACTCATCCGAATGGCTACAGCCATGTCGCGTTCGGTTC   1766

BSNT_00115___   1770 AACAAAATCATACAGGGTGTCCACGGGAGCTGCTCACGCTGCGAAGGGCG   1819
                     .||.||.||.|||.||||.||.||.||.||.|||||.||.||.||.||||
RBAM_000750__   1767 GACCAAGTCGTACCGGGTATCGACAGGCGCGGCTCATGCGGCAAAAGGCG   1816

BSNT_00115___   1820 GCGGCCTTGTCTCCGGTGACAGCTACAGCATGATGGAGCTTGGAGCCAGA   1869
                     ||||||||||||||||.||||||||||||||||||||.||.||.||.|||
RBAM_000750__   1817 GCGGCCTTGTCTCCGGCGACAGCTACAGCATGATGGAACTGGGGGCGAGA   1866

BSNT_00115___   1870 AAATATGCTGCAGCAATCAGTGACGGAATGGGCAATGGCGCAAGAGCGCA   1919
                     ||.|||||.||.||.|||||||||||.|||||||||||.||.||.||.||
RBAM_000750__   1867 AAGTATGCGGCCGCGATCAGTGACGGCATGGGCAATGGGGCGAGGGCCCA   1916

BSNT_00115___   1920 CTTTGAAAGCAATGAAACGATCAAGCTTCTTGAAAAAATCCTTGAATCGG   1969
                     .|.|||.||||||||||||||.|||||.||.||||||||.||.|||||.|
RBAM_000750__   1917 TTATGAGAGCAATGAAACGATTAAGCTGCTCGAAAAAATTCTCGAATCAG   1966

BSNT_00115___   1970 GCATTGATGAAAAAATAGCAATTAAAACGATCAACAGCATACTGTCTCTA   2019
                     |.|||||||||||||||||.||.||||||||||||||.||.||||||.||
RBAM_000750__   1967 GTATTGATGAAAAAATAGCGATAAAAACGATCAACAGTATTCTGTCTTTA   2016

BSNT_00115___   2020 AGGACAACTGACGAAATATATTCCACGCTTGACCTATCTATTATCGATCT   2069
                     .||||.||.||||||||.||.||.||.||.||.||.|||||.||.|||||
RBAM_000750__   2017 CGGACGACAGACGAAATCTACTCAACTCTCGATCTTTCTATCATTGATCT   2066

BSNT_00115___   2070 TCAAGATGCCAGCTGTAAATTTTTGAAGGTTGGATCGACGCCCAGCTTTA   2119
                     |||.|||||.|||||.|||||.||||||||.||.||.|||||.||.||||
RBAM_000750__   2067 TCAGGATGCAAGCTGCAAATTCTTGAAGGTCGGTTCAACGCCGAGTTTTA   2116

BSNT_00115___   2120 TCAAACGGGGTGACCAGGTCATGAAAGTTCAAGCGAGCAATCTGCCAATC   2169
                     ||||.|||||.||.||.|||||||||||.||.||.|||||||||||.|||
RBAM_000750__   2117 TCAAGCGGGGAGATCAAGTCATGAAAGTGCAGGCCAGCAATCTGCCGATC   2166

BSNT_00115___   2170 GGTATTATTAATGAATTCGATGTGGAGGTTGTGAGTGAACAGCTGAAAGC   2219
                     ||.||.||.||||||||.||||||||||||||.|||||||||.|.|||||
RBAM_000750__   2167 GGCATCATCAATGAATTTGATGTGGAGGTTGTAAGTGAACAGTTAAAAGC   2216

BSNT_00115___   2220 GGGTGACCTCTTAATTATGATGAGTGATGGCATTTTTGAGGGGCCTAAGC   2269
                     |||.||.||..|..|.|||||||||||.||.||||||||.|||||.||||
RBAM_000750__   2217 GGGAGATCTGCTCGTCATGATGAGTGACGGTATTTTTGAAGGGCCGAAGC   2266

BSNT_00115___   2270 ATGTGGAAAATCACGACTTATGGATGAAACGTAAAATGAAAGGGTTGAAA   2319
                     |.||.|||||.||||||.|.|||||||||||.||||||||||||.|||||
RBAM_000750__   2267 ACGTTGAAAACCACGACCTGTGGATGAAACGGAAAATGAAAGGGCTGAAA   2316

BSNT_00115___   2320 ACAAATGACCCGCAGGAGATTGCCGATTTGCTTATGGAAGAAGTCATCCG   2369
                     ||..|.|||||||||||.||.||.|||.|..|.||||||||.||||||.|
RBAM_000750__   2317 ACCGAAGACCCGCAGGAAATCGCTGATATATTAATGGAAGAGGTCATCAG   2366

BSNT_00115___   2370 CACAAGATCCGGCCAAATTGAGGACGATATGACTGTTGTTGTCGTCCGGA   2419
                     .||..|.|||||||||||.||.|||||||||||.||.|||||.|||||||
RBAM_000750__   2367 AACGCGTTCCGGCCAAATCGAAGACGATATGACAGTGGTTGTTGTCCGGA   2416

BSNT_00115___   2420 TTGATCACAATACACCGAAGTGGGCATCCATTCCTGTTCCGGCAATCTTT   2469
                     ||||||||||.||.|||||.|||||.|||||.||.||.|||||.||.||.
RBAM_000750__   2417 TTGATCACAACACGCCGAAATGGGCTTCCATACCGGTACCGGCGATTTTC   2466

BSNT_00115___   2470 CAAAACAAACAAGAAATTTCATAA   2493
                     |||||.|||.|.||.|||||.|||
RBAM_000750__   2467 CAAAATAAAAAGGAGATTTCTTAA   2490


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