Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00119 and RBAM_000780

See Amino acid alignment / Visit BSNT_00119 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:54
# Commandline: needle
#    -asequence dna-align/BSNT_00119___yacA.1.9828.seq
#    -bsequence dna-align/RBAM_000780___yacA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00119___yacA-RBAM_000780___yacA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00119___yacA-RBAM_000780___yacA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00119___yacA
# 2: RBAM_000780___yacA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1449
# Identity:    1125/1449 (77.6%)
# Similarity:  1125/1449 (77.6%)
# Gaps:          60/1449 ( 4.1%)
# Score: 4339.5
# 
#
#=======================================

BSNT_00119___      1 GTGAAAAGTGTCAAAGATTTTTTAAACAAACACA--ATCTT---ACGTTA     45
                     ||||||||.||..||||||||||.|  |||||.|  |||||   .||   
RBAM_000780__      1 GTGAAAAGCGTGGAAGATTTTTTCA--AAACATATCATCTTCAGGCG---     45

BSNT_00119___     46 AAAGGG-GCGACAATCATTGTAGGCGTTTCTGGCGGTCCGGACTCAATGG     94
                      .|||| |..||.||.||||..||.||.||.||.||.||.||.|||||||
RBAM_000780__     46 -GAGGGAGAAACGATTATTGCCGGGGTCTCCGGAGGCCCTGATTCAATGG     94

BSNT_00119___     95 CTCTTCTTCACGCGT----TGCATACGTTATGCGGCCGTTCAGCGAATGT    140
                     |.|||| |||   ||    ||.|||.|...|.|||.|.|||..|...|.|
RBAM_000780__     95 CGCTTC-TCA---GTATGCTGAATAAGCACTTCGGGCATTCCTCCGTTAT    140

BSNT_00119___    141 TATTGCAGCTCACGTTGACCATCGGTTCAGAGGTGCGGAATCCGAGGAGG    190
                     .||.||.||.||.||.|||||||.||||||.|||.|.|||||.||.||.|
RBAM_000780__    141 CATAGCGGCGCATGTCGACCATCAGTTCAGGGGTCCTGAATCTGAAGAAG    190

BSNT_00119___    191 ACATGCGTTTTGTCCAAGCTTATTGTAAAGCTGAACAGCTCGTGTGCGAA    240
                     |.|||...|||||.||..|.|||||..||||.|||||..||.|.||||||
RBAM_000780__    191 ATATGAAGTTTGTGCAGTCATATTGCGAAGCGGAACACATCCTCTGCGAA    240

BSNT_00119___    241 ACGGCTCAAATCAATGTAACCGCATATGCACAG--GAAAAAGGACTCAAT    288
                     ||||..||.||..||||..|.|||||.|||.||  |||.|||  ||.||.
RBAM_000780__    241 ACGGTACAGATTGATGTTTCTGCATACGCAAAGAAGAATAAG--CTGAAC    288

BSNT_00119___    289 AAGCAGGCTGCAGCACGTGATTGCCGCTACCAGTTTTTTGAAGAAATCAT    338
                     |||||||||||.||.|||||||||.|.||.||||||||.|||||..|.||
RBAM_000780__    289 AAGCAGGCTGCCGCGCGTGATTGCAGATATCAGTTTTTCGAAGATCTGAT    338

BSNT_00119___    339 GTCGAAGCACCAAGCGGACTATCTAGCTCTTGCGCATCATGGTGATGACC    388
                     |.|.||.|||||||||.|.|.|.|.||.||.||.||||||||.|||||.|
RBAM_000780__    339 GACAAAACACCAAGCGAAGTTTTTGGCGCTGGCTCATCATGGCGATGATC    388

BSNT_00119___    389 AGGTTGAAACAATGCTTATGAAACTGGCTAAGGGTACGCTTGGAACGGGA    438
                     |.|||||.||||||||.||||..||.||.||.||||||||.||..|.||.
RBAM_000780__    389 AAGTTGAGACAATGCTCATGAGGCTTGCGAAAGGTACGCTCGGGGCAGGG    438

BSNT_00119___    439 CTTGCGGGAATGCAGCCGGTTAGACG-TTTTGGGACGGGGCGGATCATCA    487
                     |||||||||||||||||.||..| || .||||...|.||..||.|.||||
RBAM_000780__    439 CTTGCGGGAATGCAGCCCGTCCG-CGAATTTGCATCCGGCTGGCTGATCA    487

BSNT_00119___    488 GGCCGTTCTTAACCAT--TACAAAGGAAGAGATCCTTCACTATTGCCGTG    535
                     ||||.|||.|  |.||  ..|||||||.||.||||||.|.||.||||||.
RBAM_000780__    488 GGCCTTTCCT--CTATGCGGCAAAGGATGAAATCCTTGAATACTGCCGTC    535

BSNT_00119___    536 AAAACGGTTTGAGCTACCGGACGGATGAAAGCAACGCCAAAGATGACTAC    585
                     ||.|.||..|.||||||.|.||||||||.|||||.||.|||||.||.||.
RBAM_000780__    536 AAGAAGGGCTCAGCTACAGAACGGATGAGAGCAATGCAAAAGACGATTAT    585

BSNT_00119___    586 ACAAGAAACAGATTCAGAAAAACAGTGCTCCCGTTTTTGAAGCAGGAATC    635
                     ||||||||||||||||||||.||.|||||.||.|||||.||.||.|||||
RBAM_000780__    586 ACAAGAAACAGATTCAGAAAGACCGTGCTTCCTTTTTTAAAACATGAATC    635

BSNT_00119___    636 TCCGGATGTGCATAAAAGGTTTCAGAAAGTGAGTGAAGCACTGACGGAAG    685
                     .||.||.||.|||||||.||||||.||.|||||||||||||||||.||||
RBAM_000780__    636 ACCTGACGTTCATAAAATGTTTCAAAAGGTGAGTGAAGCACTGACAGAAG    685

BSNT_00119___    686 ATGAGCAATTCTTACAGTCATTAACGAAAGATGAAATGAATAAAGTAATC    735
                     |.||.||||.|.|.|||||||||||||||||...|||||||||.||.||.
RBAM_000780__    686 ACGAACAATACCTGCAGTCATTAACGAAAGAACGAATGAATAAGGTTATT    735

BSNT_00119___    736 ACAAGCCAGTCTAATACATCAGTTGAAATCAATTCCTCTCAATTGCTTGC    785
                     ||||||.||||..|.|||||.||||||.||||||||||||||||||||||
RBAM_000780__    736 ACAAGCAAGTCAGACACATCGGTTGAAGTCAATTCCTCTCAATTGCTTGC    785

BSNT_00119___    786 CCTCCCGATGCCTTTACAAAGAAGAGGAGTTCAACTAATATTAAACTATC    835
                     |||.|||||.||||||||||||||||||||||||||||||||||||||||
RBAM_000780__    786 CCTTCCGATACCTTTACAAAGAAGAGGAGTTCAACTAATATTAAACTATC    835

BSNT_00119___    836 TTTATGAAAACGTTCCATCATCCTTTTCAGCCCATCACATTCAGCAGTTT    885
                     |||||||||||||||||||.||.|||||.||||..|||||.|||||||||
RBAM_000780__    836 TTTATGAAAACGTTCCATCGTCGTTTTCCGCCCGCCACATACAGCAGTTT    885

BSNT_00119___    886 CTCGATTGGGCGGAAAATGGCAGTCCTTCAGGAGTACTGGACTTTCCGAA    935
                     |||||.||||||||||||||.||..|.||.|||||.||.||.||||||||
RBAM_000780__    886 CTCGAATGGGCGGAAAATGGAAGCGCCTCGGGAGTGCTTGATTTTCCGAA    935

BSNT_00119___    936 AGGACTGAAGGTGGTCAAATCATATCAGACATGTTTGTTTACATTTGAAC    985
                     |||.||.|||||||||||||||||||||||||||||||||||||||||||
RBAM_000780__    936 AGGGCTCAAGGTGGTCAAATCATATCAGACATGTTTGTTTACATTTGAAC    985

BSNT_00119___    986 AATGGCAGTGCAAAAATGTTCCCTTTGAATACCAAATTAGC-GGAGCTGC   1034
                     |||||||.||..||||.||||||||||           ||| |.||||||
RBAM_000780__    986 AATGGCAATGTGAAAAAGTTCCCTTTG-----------AGCTGCAGCTGC   1024

BSNT_00119___   1035 ----------TGATGAAACGGCAGTGCTCCCTAATGGATATCTGATAGAG   1074
                               .|..||.||.||.||.|||||.||.||.|.|.||||||||
RBAM_000780__   1025 AAGGAGCGAAAGGCGAGACTGCTGTTCTCCCCAACGGCTTTATGATAGAG   1074

BSNT_00119___   1075 GCAAGGC--ATTATGCGGA--CTCGCCTGAAGAACATGGGAATGCTGTTT   1120
                     |  .|||  ||.|.||.||  |||...|.|  ||.|||||||||||||||
RBAM_000780__   1075 G--TGGCCGATCAGGCTGATCCTCATATCA--AAAATGGGAATGCTGTTT   1120

BSNT_00119___   1121 TTATCACAAGTGAAAAAAAGGTGCGGTTTCCCTTAACAATCCGGACGAGA   1170
                     ||||.|||||...|||.|||||||..|||||.||||||||||||||||||
RBAM_000780__   1121 TTATGACAAGCAGAAACAAGGTGCAATTTCCTTTAACAATCCGGACGAGA   1170

BSNT_00119___   1171 AAAGCTGGAGACCGGATCAAACTAAAAGGGATGAACGGCTCAAAAAAGGT   1220
                     |||...||.||||||||||||||.|||||||||||.|||||.||||||||
RBAM_000780__   1171 AAAATCGGCGACCGGATCAAACTTAAAGGGATGAATGGCTCGAAAAAGGT   1220

BSNT_00119___   1221 AAAGGATATATTTATTGATAAGAAACTGCCTCTCCAAGAAAGAGACAACT   1270
                     .||.|||||||||||||||.|.|||||||||||.|..||..|.|||.|.|
RBAM_000780__   1221 GAAAGATATATTTATTGATCATAAACTGCCTCTGCGGGATCGGGACGAAT   1270

BSNT_00119___   1271 GGCCGATTGTGACGGACGCAAGCGGTGAAATTATCTGGATACCTGGCTTG   1320
                     ||||||||||.|||||.||.||||||||||||||||||.|.|||||||||
RBAM_000780__   1271 GGCCGATTGTAACGGATGCGAGCGGTGAAATTATCTGGCTGCCTGGCTTG   1320

BSNT_00119___   1321 AAAAAATCAATTTTTGAAGATCTTGTGATTCCAAACAGCGACCGCATTGT   1370
                     ||||||||.||.|||||.||||||||||||.|||||||.|||||||||||
RBAM_000780__   1321 AAAAAATCCATCTTTGACGATCTTGTGATTTCAAACAGTGACCGCATTGT   1370

BSNT_00119___   1371 ATTACAATATAGACAGCATGAAAAGTGTAGGGGGCAAGCAAAATCATGA   1419
                     ||||||||||||||||||||||||||||||||||||||||..|.|||||
RBAM_000780__   1371 ATTACAATATAGACAGCATGAAAAGTGTAGGGGGCAAGCATTAACATGA   1419


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