Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00132 and RBAM_000870

See Amino acid alignment / Visit BSNT_00132 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_00132___pabC.1.9828.seq
#    -bsequence dna-align/RBAM_000870___pabC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00132___pabC-RBAM_000870___pabC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00132___pabC-RBAM_000870___pabC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00132___pabC
# 2: RBAM_000870___pabC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 956
# Identity:     634/956 (66.3%)
# Similarity:   634/956 (66.3%)
# Gaps:         145/956 (15.2%)
# Score: 2106.5
# 
#
#=======================================

BSNT_00132___      1 ---ATGATATATGTGAACGGCCGGTATATGGAGGAGAAAGATGCAGTTCT     47
                        ||.||||||.||||.||.|..|||||.|||||||||||.||.|..||
RBAM_000870__      1 GTGATTATATATTTGAATGGTCAATATATAGAGGAGAAAGAAGCGGCGCT     50

BSNT_00132___     48 TTCTCCTTTTGACCATGGGTTTTTATATGGGATCGGTGTTTTCGAAACCT     97
                     ||||||||||||||||||.|.|.|.||.||||||||.|..|||||.||.|
RBAM_000870__     51 TTCTCCTTTTGACCATGGTTATCTGTACGGGATCGGCGCGTTCGAGACGT    100

BSNT_00132___     98 TCAGGCTCTACGAAGGCTGCCCGTTTTTGCTTGATTGGCATATAGAAAGG    147
                     |||||||.|||...|||.|.||||||.|||..|||..||||.|.|..|||
RBAM_000870__    101 TCAGGCTTTACAGCGGCCGGCCGTTTCTGCCGGATGCGCATGTCGCCAGG    150

BSNT_00132___    148 CTTGAAC-GCGCGCTTAAGGATCTGCAAATCGAATAT-------ACTGTT    189
                     | |.||| |.||||||..|||||||||.||.|.||||       ||    
RBAM_000870__    151 C-TCAACAGGGCGCTTCGGGATCTGCAGATTGCATATGAGGTGAAC----    195

BSNT_00132___    190 TCAAAGCATGAGATCCTTGAGATGCT--GGACA-AGCTGCTTAAGCTAAA    236
                        ||.||.|||.|.|||||.|||||  |||.| .|.||||   .||.||
RBAM_000870__    196 ---AAACAGGAGCTGCTTGATATGCTTCGGAGACTGTTGCT---CCTCAA    239

BSNT_00132___    237 TGATATCAAGGATGGTAATGCCCGCGTCAGACTGAACATATCAGCGGGAA    286
                     |||.||||||||.||.|..||.||.|||.|.||.|||||.||.||.||..
RBAM_000870__    240 TGACATCAAGGACGGCAGCGCGCGTGTCCGGCTTAACATCTCGGCAGGCG    289

BSNT_00132___    287 TCAGCGATAAAGGCTTTGTCGCCCAGACGTACGATAAGCCGACCGTTTTA    336
                     ||||||||||.||.||||.|||.|||||.||.||.|||||||||||..|.
RBAM_000870__    290 TCAGCGATAAGGGATTTGCCGCGCAGACTTATGAAAAGCCGACCGTCCTT    339

BSNT_00132___    337 TGCTTTGTGAATCAGCTGAAACCAGAAAGCCTTCCTTTGCAAAAAGAAGG    386
                     ||.||.||.||.|||||.||.|..||||..||.|||.|.|||||||||||
RBAM_000870__    340 TGTTTCGTCAACCAGCTCAATCTGGAAACTCTGCCTGTTCAAAAAGAAGG    389

BSNT_00132___    387 GAAGGTTTTATCGATACGGAGAAACACTCCTGAGGGATCGTTCCGGTTAA    436
                     .|.|.||.|.||.||..|||||||.||.|||||.|||.|.||.|||||||
RBAM_000870__    390 CAGGCTTCTCTCTATCAGGAGAAATACGCCTGAAGGAACTTTTCGGTTAA    439

BSNT_00132___    437 AATCTCATCATTATCTAAATAATATGTATGCGAAACGGGAAATTGGAAAT    486
                     ||||.|||||.|||.||||.||.||||||||.||||||||.||.||.|||
RBAM_000870__    440 AATCCCATCACTATTTAAACAACATGTATGCTAAACGGGAGATCGGGAAT    489

BSNT_00132___    487 GATCCGCGTGTCGAGGGAATTTTCCT-AACGGAGGATGGAGCTGTTGCAG    535
                     |||||...|.|.||.||.|||||||| |.|||| ||.||||.|||.||.|
RBAM_000870__    490 GATCCCAATCTTGAAGGCATTTTCCTGACCGGA-GAAGGAGATGTCGCGG    538

BSNT_00132___    536 AGGGTATCATATCTAATGTCTTTTGGAGAAAAGGTCGTTGTA-------T    578
                     |.||.||..|.||.||.||.||||||.|||||||       |       |
RBAM_000870__    539 AAGGCATTGTCTCCAACGTGTTTTGGCGAAAAGG-------AGACAAGGT    581

BSNT_00132___    579 CTATACGCCATCGCTT-GATACTGGTATTCTGGACGGCGTCACGAGACGT    627
                     ||.|||.||||| ||| |||||.||.|||||.||||||||.|||||||..
RBAM_000870__    582 CTTTACACCATC-CTTGGATACAGGCATTCTCGACGGCGTAACGAGACAG    630

BSNT_00132___    628 TTTATCATAGA--AAATGCAAAGAATATCGGC------CTGGAGCTCA--    667
                     |||.|.||.||  ||.||.||       ||||      |.|.|| |||  
RBAM_000870__    631 TTTGTTATTGATGAATTGAAA-------CGGCAGGGGACAGAAG-TCACC    672

BSNT_00132___    668 -AAACGGGCCGAT--------------ATGAGCTAGAAGCTCTCTTGACA    702
                      ||   |||||||              |||             ||||| |
RBAM_000870__    673 GAA---GGCCGATTCCGTTTTCAATCAATG-------------CTTGA-A    705

BSNT_00132___    703 GCTGACGAAGCGTGGATGACGAACTCGGTTCTTGAAATCATCCCGTTTAC    752
                     ||.||.|||||.|||.||||.|||||.||.||||||||||||||||||.|
RBAM_000870__    706 GCGGATGAAGCATGGTTGACAAACTCCGTGCTTGAAATCATCCCGTTTTC    755

BSNT_00132___    753 TAAAATAGAAGAAGTAAACTATGGAAGCC-----------AAAGCGGAGA    791
                     |||||||||.|||||           |||           ..||||||.|
RBAM_000870__    756 TAAAATAGAGGAAGT-----------GCCGCTGCCCGGAGTGAGCGGAAA    794

BSNT_00132___    792 A-----GCAA--CCTCCGCTCTTCAATTGTTA-----TACAAAAAAGAAA    829
                     |     ||||  .|||||            ||     ||..|..|.||||
RBAM_000870__    795 AACGGTGCAATTGCTCCG------------TAAGCAGTATCAGCAGGAAA    832

BSNT_00132___    830 TAAAGAACATGATTCATGAAAAG--GGAGGAAGAGCATGGCGCAGCACAC    877
                     ||||.||.||||   |||.|.||  |||||||.|..|||||||||||.||
RBAM_000870__    833 TAAACAAAATGA---ATGTACAGGAGGAGGAACAAAATGGCGCAGCAAAC    879

BSNT_00132___    878 AATAG-    882
                     |||.| 
RBAM_000870__    880 AATTGA    885


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