Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00215 and RBAM_001370

See Amino acid alignment / Visit BSNT_00215 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:01
# Commandline: needle
#    -asequence dna-align/BSNT_00215___fusA.1.9828.seq
#    -bsequence dna-align/RBAM_001370___fusA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00215___fusA-RBAM_001370___fusA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00215___fusA-RBAM_001370___fusA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00215___fusA
# 2: RBAM_001370___fusA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2083
# Identity:    1760/2083 (84.5%)
# Similarity:  1760/2083 (84.5%)
# Gaps:         155/2083 ( 7.4%)
# Score: 8095.5
# 
#
#=======================================

BSNT_00215___      0 --------------------------------------------------      0
                                                                       
RBAM_001370__      1 ATGGCAAGAGAGTTCTCCTTAGAAAAAACTCGTAATATCGGGATCATGGC     50

BSNT_00215___      0 --------------------------------------------------      0
                                                                       
RBAM_001370__     51 TCACATCGATGCCGGTAAAACGACTACTACAGAACGGATCTTGTTCTACA    100

BSNT_00215___      1 -----------------------------------------------ATG      3
                                                                    |||
RBAM_001370__    101 CAGGCCGTATCCACAAAATTGGCGAAACTCACGAAGGTGCTTCGCAAATG    150

BSNT_00215___      4 GACTGGATGGAGCAGGAACAAGAACGTGGTATCACAATCACTTCCGCTGC     53
                     ||||||||||||||||||||||||||.|||||||||||||||||.||.||
RBAM_001370__    151 GACTGGATGGAGCAGGAACAAGAACGCGGTATCACAATCACTTCTGCAGC    200

BSNT_00215___     54 GACAACTGCACAGTGGAAAGGATACCGCGTAAACATCATCGATACTCCAG    103
                     .||.|||||||||||||||||.|||||.|||||||||||||||||.||.|
RBAM_001370__    201 AACGACTGCACAGTGGAAAGGTTACCGTGTAAACATCATCGATACACCGG    250

BSNT_00215___    104 GACACGTAGACTTCACAGTTGAAGTTGAACGTTCTCTTCGTGTACTTGAT    153
                     ||||||||||||||||||||||||||||||||||.||.||||||||||||
RBAM_001370__    251 GACACGTAGACTTCACAGTTGAAGTTGAACGTTCACTCCGTGTACTTGAT    300

BSNT_00215___    154 GGTGCTGTTGCTGTACTTGACGCGCAATCAGGCGTTGAGCCTCAAACAGA    203
                     |||||.|||||.||||||||.||.||||||||.|||||||||||.|||||
RBAM_001370__    301 GGTGCGGTTGCCGTACTTGATGCTCAATCAGGTGTTGAGCCTCAGACAGA    350

BSNT_00215___    204 AACTGTTTGGCGTCAGGCAACAACTTATGGAGTACCGCGTATCGTTTTTG    253
                     |||.||.|||||.||.|||||||||||.||||||||||||.|.||.||||
RBAM_001370__    351 AACAGTATGGCGCCAAGCAACAACTTACGGAGTACCGCGTGTTGTATTTG    400

BSNT_00215___    254 TTAACAAAATGGACAAAATCGGTGCAGACTTCCTTTACTCTGTAGGAACT    303
                     |.||||||||||||||||||||.|||||||||||||||||||||||.|||
RBAM_001370__    401 TCAACAAAATGGACAAAATCGGCGCAGACTTCCTTTACTCTGTAGGCACT    450

BSNT_00215___    304 TTAAGAGACCGTCTTCAAGCAAACGCTCATGCAATTCAATTGCCGATCGG    353
                     ||||||||||||||||||||.||||||||.||||||||||||||||||||
RBAM_001370__    451 TTAAGAGACCGTCTTCAAGCTAACGCTCACGCAATTCAATTGCCGATCGG    500

BSNT_00215___    354 TGCTGAAGATAACTTCGAAGGTATTATTGACCTTGTAGAAAACGTTGCGT    403
                     |||||||||.||||||||||||||.||.|||.|.||||||||||||||||
RBAM_001370__    501 TGCTGAAGACAACTTCGAAGGTATCATCGACTTAGTAGAAAACGTTGCGT    550

BSNT_00215___    404 ATTTCTACGAAGATGACCTCGGAACTCGTTCTGATGCAAAAGAAATCCCT    453
                     |||||||||||||||||||.|||||||||||.|||||.||||||||||||
RBAM_001370__    551 ATTTCTACGAAGATGACCTTGGAACTCGTTCAGATGCGAAAGAAATCCCT    600

BSNT_00215___    454 GAAGAGTACAAAGAGCAAGCTGAAGAGCTTCGCAACAGCCTTATTGAAGC    503
                     ||||||||||||||||||||||||||||||||||.||||||.||||||||
RBAM_001370__    601 GAAGAGTACAAAGAGCAAGCTGAAGAGCTTCGCAGCAGCCTGATTGAAGC    650

BSNT_00215___    504 TGTATGTGAGCTTGATGAAGAGCTTATGGATAAGTACCTTGAGGGTGAAG    553
                     ||||..||||||||||||||||||||||||.|||||||||||.|||||||
RBAM_001370__    651 TGTAGCTGAGCTTGATGAAGAGCTTATGGAAAAGTACCTTGAAGGTGAAG    700

BSNT_00215___    554 AAATCACAAT---TG-ACGAGTTAAAAGCAGGAATTCGTAAAGGTACATT    599
                     |||||||.||   || ||    |.|||||.|..||.||||||||||||.|
RBAM_001370__    701 AAATCACTATCCCTGAAC----TGAAAGCTGCTATCCGTAAAGGTACACT    746

BSNT_00215___    600 AAATGTTGAATTCTACCCTGTTCTTGTTGGTTCTGCCTTCAAAAACAAAG    649
                     .||||||||||||||||||||.||||||||.|||||.|||||||||||||
RBAM_001370__    747 GAATGTTGAATTCTACCCTGTACTTGTTGGATCTGCTTTCAAAAACAAAG    796

BSNT_00215___    650 GTGTTCAACTAGTACTTGATGCTGTTCTTGACTACCTTCCTGCACCAACT    699
                     |||||||.||.||||||||||||||||||||||||||||||||.||||||
RBAM_001370__    797 GTGTTCAGCTTGTACTTGATGCTGTTCTTGACTACCTTCCTGCGCCAACT    846

BSNT_00215___    700 GACGTTGCTGCAATCAAAGGTACACGTCCTGATACAAATGAAGAGATTGA    749
                     ||.||||||||||||||||||..|||||||||||||.||||||||||.|.
RBAM_001370__    847 GATGTTGCTGCAATCAAAGGTGTACGTCCTGATACAGATGAAGAGATCGT    896

BSNT_00215___    750 GCGTCATTCTTCTGACGAAGAGCCATTCTCTGCATTAGCATTTAAAGTTA    799
                     .||||||||||||||.||||||||||||||||||.|.|||||||||||||
RBAM_001370__    897 TCGTCATTCTTCTGATGAAGAGCCATTCTCTGCACTTGCATTTAAAGTTA    946

BSNT_00215___    800 TGACTGACCCTTACGTTGGTAAGTTGACGTTCTTCCGTGTGTACTCTGGA    849
                     |||||||||||||.||.||||||.||||.||||||||.||.||.||.||.
RBAM_001370__    947 TGACTGACCCTTATGTCGGTAAGCTGACATTCTTCCGCGTATATTCCGGT    996

BSNT_00215___    850 ACACTTGATTCTGGTTCATACGTGAAAAACTCTACTAAAGGCAAACGTGA    899
                     |||||||||||.||||||||.||.||.||||||||.||||||||.|||||
RBAM_001370__    997 ACACTTGATTCCGGTTCATATGTAAAGAACTCTACAAAAGGCAAGCGTGA   1046

BSNT_00215___    900 GCGTGTTGGACGTATTCTTCAAATGCACGCTAACAGCCGTGAAGAAATCT    949
                     |||.||.||||||||.|||||||||||||||||||||||||||||.||||
RBAM_001370__   1047 GCGCGTAGGACGTATCCTTCAAATGCACGCTAACAGCCGTGAAGAGATCT   1096

BSNT_00215___    950 CTACTGTATACGCAGGGGATATCGCAGCTGCTGTAGGTCTAAAAGATACA    999
                     |||||||.|||||.||.||.|||||||||||||||||||||||||||||.
RBAM_001370__   1097 CTACTGTTTACGCTGGAGACATCGCAGCTGCTGTAGGTCTAAAAGATACT   1146

BSNT_00215___   1000 ACTACTGGAGATACTCTATGTGATGAGAAGGATCTTGTTATCCTTGAGTC   1049
                     .|||||||||||||||||||||||||||||||||||||.||||||||.||
RBAM_001370__   1147 TCTACTGGAGATACTCTATGTGATGAGAAGGATCTTGTAATCCTTGAATC   1196

BSNT_00215___   1050 AATGGAATTCCCAGAACCAGTTATCGACGTTGCTATTGAGCCTAAATCAA   1099
                     |||||||||||||||.||.|||||||||||.||.||||||||||||||||
RBAM_001370__   1197 AATGGAATTCCCAGAGCCTGTTATCGACGTAGCGATTGAGCCTAAATCAA   1246

BSNT_00215___   1100 AAGCTGACCAAGATAAAATGGGTATCGCTTTAGCGAAACTTGCTGAAGAA   1149
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001370__   1247 AAGCTGACCAAGATAAAATGGGTATCGCTTTAGCGAAACTTGCTGAAGAA   1296

BSNT_00215___   1150 GATCCTACATTCCGTACTCAAACAAACCCAGAAACTGGCCAAACGATCAT   1199
                     |||||||||||||||||.|||||||||||.|||||.||.|||||.|||||
RBAM_001370__   1297 GATCCTACATTCCGTACACAAACAAACCCTGAAACGGGTCAAACAATCAT   1346

BSNT_00215___   1200 CTCTGGTATGGGTGAACTTCACCTTGATATCATTGTTGACCGTATGAAAC   1249
                     |||||||||||||||.|||||||||||||||||||||||.||||||||.|
RBAM_001370__   1347 CTCTGGTATGGGTGAGCTTCACCTTGATATCATTGTTGATCGTATGAAGC   1396

BSNT_00215___   1250 GCGAATTTAAAGTAGAAGCCAACGTTGGTGCTCCTCAAGTTGCGTACCGT   1299
                     |.||.||.|||||.|||||.||||||||||||||||||||||||||||||
RBAM_001370__   1397 GTGAGTTCAAAGTTGAAGCTAACGTTGGTGCTCCTCAAGTTGCGTACCGT   1446

BSNT_00215___   1300 GAAACATTCCGTACCGGTGCAAAAGTTGAAGGTAAATTCGTACGTCAGTC   1349
                     ||.||||||||||||||||||||||||||||||||||||||||||||.||
RBAM_001370__   1447 GAGACATTCCGTACCGGTGCAAAAGTTGAAGGTAAATTCGTACGTCAATC   1496

BSNT_00215___   1350 TGGTGGACGCGGTCAGTTCGGACACGTTTGGATCGAATTCGAACCAAACG   1399
                     .||.||.||||||||||||||.|||||||||||||||||.|||||.||||
RBAM_001370__   1497 AGGCGGGCGCGGTCAGTTCGGTCACGTTTGGATCGAATTTGAACCGAACG   1546

BSNT_00215___   1400 AAGAAGGCGCTGGCTTTGAATTTGAAAATGCGATTGTCGGTGGGGTCGTT   1449
                     ||||||||||||||||||||||.|||||.||.||.||||||||.||.|||
RBAM_001370__   1547 AAGAAGGCGCTGGCTTTGAATTCGAAAACGCAATCGTCGGTGGTGTTGTT   1596

BSNT_00215___   1450 CCTCGTGAATATATCCCAGCTGTTCAAGCAGGTCTGGAAGAGGCACTTGA   1499
                     |||||||||||.||||||||.||.|||||||||||.|||||..|.|||||
RBAM_001370__   1597 CCTCGTGAATACATCCCAGCCGTACAAGCAGGTCTTGAAGACTCTCTTGA   1646

BSNT_00215___   1500 AAATGGTGTACTAGCAGGCTTCCCGCTTATTGACATTAAAGCTAAACTTT   1549
                     |||||||||.|||||.||.||||||||.||.|||||.||.||.|||||||
RBAM_001370__   1647 AAATGGTGTCCTAGCCGGATTCCCGCTAATCGACATCAAGGCGAAACTTT   1696

BSNT_00215___   1550 TCGACGGTTCTTACCATGATGTTGACTCAAACGAAATGGCATTTAAAGTT   1599
                     |.||.||.||||||||||||||||||||||||||||||||.||||||||.
RBAM_001370__   1697 TTGATGGATCTTACCATGATGTTGACTCAAACGAAATGGCGTTTAAAGTC   1746

BSNT_00215___   1600 GCTGCTTCTATGGCATTGAAAAATGCAGTCAGCAAATGTAACCCAGTTCT   1649
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_001370__   1747 GCTGCTTCTATGGCATTGAAAAATGCAGTCAGCAAATGTAACCCAGTTCT   1796

BSNT_00215___   1650 TCTTGAACCAATCATGAAAGTGGAAGTGGTTATTCCAGAAGAATACATGG   1699
                     |||||||||||||||||||||.|||||.||||||||.|||||||||||||
RBAM_001370__   1797 TCTTGAACCAATCATGAAAGTTGAAGTTGTTATTCCTGAAGAATACATGG   1846

BSNT_00215___   1700 GAGATATCATGGGTGATATCACTTCACGTCGCGGACGCGTAGAAGGTATG   1749
                     ||||.||||||||||||.|.|||||.|||||||||||.||||||||||||
RBAM_001370__   1847 GAGACATCATGGGTGATGTTACTTCTCGTCGCGGACGTGTAGAAGGTATG   1896

BSNT_00215___   1750 GAAGCACGCGGTAACGCTCAAGTTGTTCGCGCTATGGTTCCTCTTGCTGA   1799
                     |||||.||||||||||||||||||||.||.||.|||||.|||||||||||
RBAM_001370__   1897 GAAGCTCGCGGTAACGCTCAAGTTGTGCGTGCGATGGTACCTCTTGCTGA   1946

BSNT_00215___   1800 AATGTTCGGTTACGCTACTGCACTTCGTTCTAATACCCAAGGTCGCGGTA   1849
                     |||||||||||||||||||||.|||||||||||.||.|||||.|||||||
RBAM_001370__   1947 AATGTTCGGTTACGCTACTGCCCTTCGTTCTAACACGCAAGGACGCGGTA   1996

BSNT_00215___   1850 CGTTCACTATGCACATGGATCACTACGAAGAAGTGCCGAAGAGCGTCGCA   1899
                     |||||||.|||..|||||||||||||||||||||||||||||||.||||.
RBAM_001370__   1997 CGTTCACAATGTTCATGGATCACTACGAAGAAGTGCCGAAGAGCATCGCT   2046

BSNT_00215___   1900 GAAGAAATTATCAAAAAAAATAAAGGCGAATAA   1932
                     |||||||||||||||||||||||||||||||||
RBAM_001370__   2047 GAAGAAATTATCAAAAAAAATAAAGGCGAATAA   2079


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