Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00250 and RBAM_001700

See Amino acid alignment / Visit BSNT_00250 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:03
# Commandline: needle
#    -asequence dna-align/BSNT_00250___ybxA.1.9828.seq
#    -bsequence dna-align/RBAM_001700___cbiO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00250___ybxA-RBAM_001700___cbiO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00250___ybxA-RBAM_001700___cbiO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00250___ybxA
# 2: RBAM_001700___cbiO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 850
# Identity:     702/850 (82.6%)
# Similarity:   702/850 (82.6%)
# Gaps:           8/850 ( 0.9%)
# Score: 2889.0
# 
#
#=======================================

BSNT_00250___      1 ATGAATCAAAATCAGTTGATATCGGTAGAGGATATCGTATTTCGATATCG     50
                     .||.|||||||.|||.|.|||||.|||.|.||.||..||||.||.||.||
RBAM_001700__      1 GTGGATCAAAAACAGCTTATATCCGTAAAAGACATTCTATTCCGCTACCG     50

BSNT_00250___     51 GAAGGACGCAGAAAGACGAGCACTAGACGGCGTCTCCCTGCAGGTGTATG    100
                     .||.||.||||||||||..||.||.|||||.||....|||.||||.||.|
RBAM_001700__     51 CAAAGATGCAGAAAGACCGGCGCTGGACGGTGTGAGTCTGGAGGTATACG    100

BSNT_00250___    101 AGGGTGAATGGCTTGCAATCGTAGGTCATAACGGTTCAGGGAAATCAACA    150
                     |.||.|||||||||||.||||||||.||.||||||||||||||.||.||.
RBAM_001700__    101 AAGGAGAATGGCTTGCTATCGTAGGCCACAACGGTTCAGGGAAGTCGACT    150

BSNT_00250___    151 CTGGCCCGGGCATTGAATGGTTTAATTCTTCCTGAATCAGGCGACATTGA    200
                     .|||||.|.||..||||.||..|.|||.|.|||||..|.||.||.|||||
RBAM_001700__    151 TTGGCCAGAGCGCTGAACGGGCTGATTTTGCCTGAGGCCGGAGAAATTGA    200

BSNT_00250___    201 GGTTGCCGGGATTCAATTGACAGAGGAATCTGTTTGGGAAGTGCGTAAGA    250
                     .||.|.|||.||..||.||||.|||||..|.||.|||||.|||||.||.|
RBAM_001700__    201 AGTCGGCGGCATCAAACTGACTGAGGATACCGTGTGGGATGTGCGAAAAA    250

BSNT_00250___    251 AGATAGGTATGGTCTTTCAAAATCCGGATAACCAATTTGTCGGAACGACT    300
                     |.|||||.|||||||||||.|||||.||||||||||||||||||||||||
RBAM_001700__    251 AAATAGGGATGGTCTTTCAGAATCCCGATAACCAATTTGTCGGAACGACT    300

BSNT_00250___    301 GTTCGCGATGATGTGGCTTTTGGTTTAGAAAACAATGGTGTACCGCGGGA    350
                     |||||||||||||||||||||||||||||||||||||||||.|||||.||
RBAM_001700__    301 GTTCGCGATGATGTGGCTTTTGGTTTAGAAAACAATGGTGTTCCGCGCGA    350

BSNT_00250___    351 AGAAATGATTGAGAGAGTAGACTGGGCAGTAAAACAGGTTAATATGCAAG    400
                     |||||||||||||||||||||.|||||.||.|.|||.||.||||||||.|
RBAM_001700__    351 AGAAATGATTGAGAGAGTAGATTGGGCTGTCACACAAGTCAATATGCAGG    400

BSNT_00250___    401 ATTTTCTCGATCAAGAGCCGCACCATCTCTCCGGAGGCCAAAAGCAGAGA    450
                     |||||||.|||||||||||||||||||||||||||||.|||||.||.|||
RBAM_001700__    401 ATTTTCTTGATCAAGAGCCGCACCATCTCTCCGGAGGTCAAAAACAAAGA    450

BSNT_00250___    451 GTTGCGATTGCGGGGGTTATTGCCGCACGTCCTGATATTATTATCTTAGA    500
                     ||.|||||.|||||..||||||||||.||||||||||||||.||.||.||
RBAM_001700__    451 GTGGCGATCGCGGGAATTATTGCCGCGCGTCCTGATATTATGATTTTGGA    500

BSNT_00250___    501 TGAAGCAACATCCATGCTTGATCCGATCGGGCGAGAAGAAGTGCTTGAAA    550
                     ||||||.||||||||||||||.|||||.|||.||||||||||.|||||.|
RBAM_001700__    501 TGAAGCGACATCCATGCTTGACCCGATTGGGAGAGAAGAAGTCCTTGATA    550

BSNT_00250___    551 CGGTAAGACATTTAAAAGAGCAGGGCATGGCGACTGTCATATCCATTACA    600
                     |.||.||||..||||||||.|||||||||||.||.|||||.||.||.|||
RBAM_001700__    551 CTGTCAGACGCTTAAAAGATCAGGGCATGGCCACCGTCATTTCGATAACA    600

BSNT_00250___    601 CATGATCTGGATGAGGCAGCAAAAGCAGACAGGATCATTGTCATGAATGG    650
                     |||||.|||||.||.||.||||..||.||||||||||||||.|||||.||
RBAM_001700__    601 CATGACCTGGAAGAAGCCGCAAGGGCGGACAGGATCATTGTGATGAACGG    650

BSNT_00250___    651 CGGTAAAAAATATGCTGAAGGGC-CGCCTGAAGAGATTTTTAAATTGAAT    699
                     |||.|..||||||||.| ||||| ||||||||||||||||||||||.||.
RBAM_001700__    651 CGGCAGGAAATATGCAG-AGGGCACGCCTGAAGAGATTTTTAAATTAAAC    699

BSNT_00250___    700 AAAGAACTT-GTTCGAATCGGGCTTGATTTACCCTTCTCATTCCAGCTTA    748
                     .||| |||| |||||.|||||.||||||||.||.||||||||||||||.|
RBAM_001700__    700 GAAG-ACTTGGTTCGCATCGGTCTTGATTTGCCTTTCTCATTCCAGCTCA    748

BSNT_00250___    749 GCCAGCTTTTAAGAGAAAATGGACTGGCTTTGGAA--GAAAACCATTTGA    796
                     |||.||||||.|.|||||..||||||||.||  ||  .||||||||.|||
RBAM_001700__    749 GCCTGCTTTTGAAAGAAAGCGGACTGGCGTT--AACGAAAAACCATCTGA    796

BSNT_00250___    797 CTCAGGAAGGGCTGGTGAAAGAGCTGTGGACATTACAATCAAAGATGTAG    846
                     |||||||||||||||||||.|||||||||||||||.||||||||||||||
RBAM_001700__    797 CTCAGGAAGGGCTGGTGAATGAGCTGTGGACATTAAAATCAAAGATGTAG    846


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