Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00252 and RBAM_001720

See Amino acid alignment / Visit BSNT_00252 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:04
# Commandline: needle
#    -asequence dna-align/BSNT_00252___ybaF.1.9828.seq
#    -bsequence dna-align/RBAM_001720___ybaF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00252___ybaF-RBAM_001720___ybaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00252___ybaF-RBAM_001720___ybaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00252___ybaF
# 2: RBAM_001720___ybaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 817
# Identity:     596/817 (72.9%)
# Similarity:   596/817 (72.9%)
# Gaps:          38/817 ( 4.7%)
# Score: 2172.0
# 
#
#=======================================

BSNT_00252___      1 ATGATGGACAGCATGATTATCGGCAAGTATGTACCGGGGACTTCACTTGT     50
                     |||||||||||||||||||||||.||||||||.||.||..|.||.|||.|
RBAM_001720__      1 ATGATGGACAGCATGATTATCGGAAAGTATGTTCCCGGATCATCGCTTAT     50

BSNT_00252___     51 TCACCGGCTTGACCCCAGAACAAAACTGATCACGATCTTTTTATTTGTCT    100
                     ||||||..|.|||||..||||||||||..|||..||.|||.|.|||||.|
RBAM_001720__     51 TCACCGATTGGACCCGCGAACAAAACTTGTCAGCATTTTTCTTTTTGTAT    100

BSNT_00252___    101 GCATTGTATTCTTAGCCAATAATGTTCAGACATACGCGTTGCTTGGTTTA    150
                     |.||.||.||.||.||.||.||.||.|||||.|||||.|||||.|||||.
RBAM_001720__    101 GTATCGTCTTTTTGGCAAACAACGTACAGACGTACGCTTTGCTCGGTTTG    150

BSNT_00252___    151 TTTACAATTGGCGTCGTTTCTTTAACAAGAGTTCCTTTCTCTTTTTTAAT    200
                     ||||||.|.||.||..|..|.||.||..|.||.||.|||...|||||..|
RBAM_001720__    151 TTTACATTCGGGGTGATCGCCTTGACTCGCGTGCCGTTCAGCTTTTTGCT    200

BSNT_00252___    201 GAAAGGGCTGAAGCCAATCATCTGGATTGT--------CCTTTTTACGTT    242
                     |||.|||||.|||||.||.|||||||||||        ||||||||    
RBAM_001720__    201 GAAGGGGCTTAAGCCGATTATCTGGATTGTGGCGTTTACCTTTTTA----    246

BSNT_00252___    243 CCTTCTT-CACATCCTTATGACACATGAAGGACCGATTATCTTTCAAATA    291
                          || |||||..|.|||||.|||||||||.|..|.||.|||||..|.
RBAM_001720__    247 -----TTACACATTTTCATGACGCATGAAGGATCTGTCATTTTTCAGCTT    291

BSNT_00252___    292 GGTTTTTTCAAAGTCTATGAGGGCGGTCTGGTTCAGGGGATATTCATTTC    341
                     ||.|..||.|||||.|||||||||||.||..|.|||||.||.||.||.||
RBAM_001720__    292 GGCTGGTTTAAAGTGTATGAGGGCGGACTTATACAGGGTATTTTTATCTC    341

BSNT_00252___    342 TCTTAGATTCGTCTATTTGATTTTAATCACAACTTTATTAACGCTTACGA    391
                     .||..|.|||||.||..|.||.||.||.||.||..|..|.|||||.||.|
RBAM_001720__    342 CCTCCGTTTCGTTTACCTTATCTTTATGACGACGCTGCTGACGCTGACAA    391

BSNT_00252___    392 CCACACCGATTGAGATTACCGATGGAATGGAGCAGCTGCTGAACCCATTG    441
                     |.||.||||||||.||.||.||||||.||||||||||.|||||.||.||.
RBAM_001720__    392 CAACGCCGATTGAAATAACGGATGGACTGGAGCAGCTCCTGAATCCTTTT    441

BSNT_00252___    442 AAAAAATTAAAGCTTCCTGTTCATGAGCTGGCTCTTATGATGTCAATTTC    491
                     |||||..|.|||||.||.||.||.||.||.||..|.||||||||.||.||
RBAM_001720__    442 AAAAAGGTGAAGCTGCCCGTACACGAACTCGCATTGATGATGTCGATATC    491

BSNT_00252___    492 TTTACGGTTTATTCCGACACTGATGGAGGAGACAGATAAGATCATGAAGG    541
                     .||.||.|||||.||.|||.|||||||.|||||||||||.||||||||||
RBAM_001720__    492 ATTGCGATTTATCCCTACATTGATGGAAGAGACAGATAAAATCATGAAGG    541

BSNT_00252___    542 CTCAGATGGCGCGAGGCGTTGATTTTACAAGCGGGCCTGTCAAAGAAAGA    591
                     |.||.||||||.|.||.|..||.|||||||||||.||.||.|||||.|||
RBAM_001720__    542 CGCAAATGGCGAGGGGTGCGGACTTTACAAGCGGCCCGGTGAAAGACAGA    591

BSNT_00252___    592 GTGAAGGCTATTGTCCCGCTTCTTGTCCCGCTCTTCGTCAGCGCATTTAA    641
                     .|.||.||..||||.|||||.|||||||||||.||.||||||||.|||||
RBAM_001720__    592 ATCAAAGCGGTTGTTCCGCTGCTTGTCCCGCTGTTTGTCAGCGCCTTTAA    641

BSNT_00252___    642 ACGCGCCGAAGAGCTTGCGGTGGCAATGGAAGCAAGAGGCTATCAAGGCG    691
                     ||||||.||||||||.|||||.||.|||||.||.||||||||.||.||||
RBAM_001720__    642 ACGCGCGGAAGAGCTCGCGGTCGCCATGGAGGCGAGAGGCTACCAGGGCG    691

BSNT_00252___    692 GAGAAGGACGTACGAAATATAGAAAGCTTGTATGGACAGGAAAAGACAC-    740
                     |.||.||..|.||||||||.||||||||.||.|||||.|||||.||.|| 
RBAM_001720__    692 GTGAGGGGAGAACGAAATACAGAAAGCTCGTCTGGACCGGAAAGGATACC    741

BSNT_00252___    741 -------TTCTGTCATTGTCAGCTTA--ATTGTATTAGCTGCTTTGTTAT    781
                            ||||          |||||  ||.||||||||.|..||.||.|
RBAM_001720__    742 GGAGCTATTCT----------GCTTATCATCGTATTAGCCGTGTTATTGT    781

BSNT_00252___    782 TTTTCTTAAGGGCTTAG    798
                     ||||||||||...||||
RBAM_001720__    782 TTTTCTTAAGAAGTTAG    798


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00252 and RBAM_001720

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
