Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00348 and RBAM_002320

See Amino acid alignment / Visit BSNT_00348 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_00348___glmS.1.9828.seq
#    -bsequence dna-align/RBAM_002320___glmS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00348___glmS-RBAM_002320___glmS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00348___glmS-RBAM_002320___glmS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00348___glmS
# 2: RBAM_002320___glmS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1808
# Identity:    1549/1808 (85.7%)
# Similarity:  1549/1808 (85.7%)
# Gaps:          10/1808 ( 0.6%)
# Score: 6668.0
# 
#
#=======================================

BSNT_00348___      1 ATGTGTGGAATCGTAGGTTATATCGGTCAGCTTGATGCGAAGGAAATTTT     50
                     |||||||||||.|||||||||||||||||||||||||||||.||.|||||
RBAM_002320__      1 ATGTGTGGAATTGTAGGTTATATCGGTCAGCTTGATGCGAAAGAGATTTT     50

BSNT_00348___     51 ATTAAAAGGGTTAGAGAAGCTTGAGTATCGCGGTTATGACTCTGCTGGTA    100
                     .||||||||.|||||||||||||||||.|||||.|||||||||||.||||
RBAM_002320__     51 GTTAAAAGGATTAGAGAAGCTTGAGTACCGCGGCTATGACTCTGCAGGTA    100

BSNT_00348___    101 TTGCTGTTGCCAACGAACAGGGAATCCATGTGTTCAAAGAAAAAGGACGC    150
                     |.|||||.||.||.||.|||||..|.|||||||.||||||||||||.|||
RBAM_002320__    101 TCGCTGTGGCGAATGAGCAGGGCGTGCATGTGTACAAAGAAAAAGGCCGC    150

BSNT_00348___    151 ATTGCAGATCTTCGTGAAGTTGTGGATGCCAAT--GTAGAGGCGAAAGCC    198
                     ||.||.||.|||||||||||.||||||  ||.|  ||.||..|..||||.
RBAM_002320__    151 ATCGCCGACCTTCGTGAAGTGGTGGAT--CACTCGGTTGAATCTCAAGCG    198

BSNT_00348___    199 GGAATTGGGCATACTCGCTGGGCTACACACGGCGAACCAAGCTATCTGAA    248
                     |||||.||.|||||.||||||||.||.||||||||||||||||..|||||
RBAM_002320__    199 GGAATCGGCCATACACGCTGGGCGACTCACGGCGAACCAAGCTTCCTGAA    248

BSNT_00348___    249 CGCTCACCCGCATCAAAGCGCACTGGGCCGCTTTACACTTGTTCATAACG    298
                     ||||||||||||||||||||||||.||||||||||||||||||||.||||
RBAM_002320__    249 CGCTCACCCGCATCAAAGCGCACTCGGCCGCTTTACACTTGTTCACAACG    298

BSNT_00348___    299 GCGTGATCGAGAACTATGTTCAGCTGAAGCAAGAGTAT-TTGCAAGATGT    347
                     |.||||||||||||||||||||||||||||..||.||| ||| ||.|.||
RBAM_002320__    299 GTGTGATCGAGAACTATGTTCAGCTGAAGCGCGAATATCTTG-AAAACGT    347

BSNT_00348___    348 AGAGCTTAAAAGTGACACCGATACAGAAGTAGTCGTTCAAGTAATCGAGC    397
                     .||.||.|||||.||.||.||.||.|||||||||||||||.|.|||||||
RBAM_002320__    348 TGAACTGAAAAGCGATACGGACACTGAAGTAGTCGTTCAAATGATCGAGC    397

BSNT_00348___    398 AATTCGTCAATGGAGGACTTGAG-ACAGAAGAAGCGTTCCGTAAAACACT    446
                     ||||.||....|||||.||| || |||||||||||||||||.||||||||
RBAM_002320__    398 AATTTGTGGCGGGAGGTCTT-AGCACAGAAGAAGCGTTCCGCAAAACACT    446

BSNT_00348___    447 TACACTGTTAAAAGGCTCTTATGCAATTGCTTTATTCGATAACGACAACA    496
                     .||.|||||||||||||||||.||||||||.|||||.||....||.||||
RBAM_002320__    447 GACTCTGTTAAAAGGCTCTTACGCAATTGCATTATTTGACGGTGAAAACA    496

BSNT_00348___    497 GAGAAACGATTTTTGTAGCGAAAAACAAAAGCCCTCTATTAGTAGGTCTT    546
                     .|||.||.||||..||.||.|||||||||||||||||.|||.|.||.|||
RBAM_002320__    497 CAGACACCATTTACGTTGCAAAAAACAAAAGCCCTCTGTTAATCGGCCTT    546

BSNT_00348___    547 GGAGATACATTCAACGTCGTAGCATCTGATGCAATGGCGATGCTTCAAGT    596
                     ||||||||.||.||||||||.||.|||||.||.|||||.|||||||||||
RBAM_002320__    547 GGAGATACGTTTAACGTCGTGGCGTCTGACGCGATGGCTATGCTTCAAGT    596

BSNT_00348___    597 AACCAACGAATATGTTGAGCTGATGGATAAAGAAATGGTTATCGTCACTG    646
                     |||.||.|||||.||||||||..||||.|||||||||||.|||||.||..
RBAM_002320__    597 AACGAATGAATACGTTGAGCTTTTGGACAAAGAAATGGTGATCGTGACAA    646

BSNT_00348___    647 ATGACCAAGTTGTCATCAAAAACCTTGATGGTGACGTGATTACACGTGCG    696
                     |.|||.|||..||.||.|||||||||||.|||||.||.||.|||||||||
RBAM_002320__    647 AAGACGAAGCCGTGATTAAAAACCTTGACGGTGAAGTCATGACACGTGCG    696

BSNT_00348___    697 TCTTATATTGCTGAGCTTGATGCCAGTGATATCGAAAAAGGCACGTACCC    746
                     ||||||||.|||||||||||.|||||||||||||||||||||||.|||||
RBAM_002320__    697 TCTTATATCGCTGAGCTTGACGCCAGTGATATCGAAAAAGGCACATACCC    746

BSNT_00348___    747 TCACTACATGTTGAAAGAAACGGATGAGCAGCCTGTTGTTATGCGCAAAA    796
                     ||||||||||||.||||||||||||||||||||..|||||||||||||||
RBAM_002320__    747 TCACTACATGTTAAAAGAAACGGATGAGCAGCCGCTTGTTATGCGCAAAA    796

BSNT_00348___    797 TCATCCAAACGTATCAAGATGAAAACGGCAAGCTGTCTGTGCCTGGTGAT    846
                     ||||||||||||||||.||.||||||||||..|||.|.|||.|.||.|||
RBAM_002320__    797 TCATCCAAACGTATCAGGACGAAAACGGCAGACTGGCCGTGGCCGGCGAT    846

BSNT_00348___    847 ATCGCTGCCGCTGTAGCGGAAGCGGACCGCATCTATATCATTGGC-TGCG    895
                     .||||||.|||.||.|||||||||||||||||.|||||| .|||| ||||
RBAM_002320__    847 GTCGCTGACGCCGTGGCGGAAGCGGACCGCATTTATATC-GTGGCTTGCG    895

BSNT_00348___    896 GAACAAGCTACCATGCAGGACTTGTCGGTAAACAATATATTGAAATGTGG    945
                     ||||.||||||||.||.||.||||||||.|||||||||||||||||||||
RBAM_002320__    896 GAACGAGCTACCACGCTGGTCTTGTCGGGAAACAATATATTGAAATGTGG    945

BSNT_00348___    946 GCAAACGTGCCGGTTGAAGTGCATGTAGCGAGTGAATTCTCCTACAACAT    995
                     ||||||||.||||||||||||||||||||||||||||||||.||||||||
RBAM_002320__    946 GCAAACGTACCGGTTGAAGTGCATGTAGCGAGTGAATTCTCTTACAACAT    995

BSNT_00348___    996 GCCGCTTCTGTCTAAGAAACCGCTCTTCATTTTCCTTTCTCAAAGCGGAG   1045
                     ||||||||||||||||||.||||||||.||.|||||||||||||||||||
RBAM_002320__    996 GCCGCTTCTGTCTAAGAAGCCGCTCTTTATCTTCCTTTCTCAAAGCGGAG   1045

BSNT_00348___   1046 AAACAGCAGACAGCCGCGCGGTTCTCGTTCAAGTCAAAGCGCTCGGACAC   1095
                     |||||||.|||||||||||.||.||.|||||||||||||||||.||.|||
RBAM_002320__   1046 AAACAGCGGACAGCCGCGCCGTGCTTGTTCAAGTCAAAGCGCTGGGTCAC   1095

BSNT_00348___   1096 AAAGCCCTGACAATCACAAACGTACCTGGATCAACGCTTTCTCGTGAAGC   1145
                     |||||.||||||||.||||||||.||.||||||||||||||.||||||||
RBAM_002320__   1096 AAAGCGCTGACAATTACAAACGTTCCGGGATCAACGCTTTCCCGTGAAGC   1145

BSNT_00348___   1146 TGACTATACATTGCTGCTTCATGCAGGCCCTGAGATCGCTGTTGCGTCAA   1195
                     .||.||.||||||||.||.||.|||||||||||||||||||||||.||||
RBAM_002320__   1146 GGATTACACATTGCTTCTGCACGCAGGCCCTGAGATCGCTGTTGCATCAA   1195

BSNT_00348___   1196 CAAAAGCATACACTGCACAAATTGCAGTTCTTGCGGTTCTTGCTTCTGTG   1245
                     |||||||.||.||.||.||.|||||.||.||.|||.|.|||||.||.||.
RBAM_002320__   1196 CAAAAGCGTATACGGCTCAGATTGCCGTCCTCGCGATCCTTGCGTCCGTT   1245

BSNT_00348___   1246 GCTGCTGACAAAAACGGCATCGATATCGGATTTGACCTCGTCAAAGAACT   1295
                     ||.||.||....||||||.|.||||||||.|||||..|.|||||||||.|
RBAM_002320__   1246 GCAGCAGAACGCAACGGCGTTGATATCGGTTTTGATTTAGTCAAAGAATT   1295

BSNT_00348___   1296 CGCTATCGCTGCAAACGCAATGGAAGCTCTATGCGACCAGAAAGACGAAA   1345
                     .|.|||.||.||||||||.||||||||.||.|||||||||||.|||||||
RBAM_002320__   1296 AGGTATTGCGGCAAACGCCATGGAAGCCCTCTGCGACCAGAAGGACGAAA   1345

BSNT_00348___   1346 TGGAAATGATCGCCCGTGAATACCTGACTGTATCCAGAAACGCTTTCTTC   1395
                     |||||||||||||.|||||.|||||||||||.||.|||||||||||||||
RBAM_002320__   1346 TGGAAATGATCGCGCGTGAGTACCTGACTGTTTCAAGAAACGCTTTCTTC   1395

BSNT_00348___   1396 ATCGGACGTGGCCTTGACTACTTCGTATGTGTCGAAGGCGCACTGAAGCT   1445
                     |||||.||.||||||||||||||||||||||||||||||||.||||||||
RBAM_002320__   1396 ATCGGCCGCGGCCTTGACTACTTCGTATGTGTCGAAGGCGCCCTGAAGCT   1445

BSNT_00348___   1446 GAAAGAGATTTCTTACATCCAGGCAGAAGGTTTTGCCGGCGGTGAGCTAA   1495
                     ||||||||||||||||||||||||.|||||.||.||||||||.|||||.|
RBAM_002320__   1446 GAAAGAGATTTCTTACATCCAGGCGGAAGGCTTCGCCGGCGGCGAGCTGA   1495

BSNT_00348___   1496 AGCACGGAACGATTGCCTTGATCGAACAAGGAACACCAGTATTCGCACTG   1545
                     ||||.|||||.||.||..||||.|||.||||||||||.||.||.||.|||
RBAM_002320__   1496 AGCATGGAACAATCGCTCTGATTGAAGAAGGAACACCGGTCTTTGCGCTG   1545

BSNT_00348___   1546 GCAACTCAAGAGCACGTAAACCTAAGCATCCGCGGAAACGTCAAAGAAGT   1595
                     ||.||.|||||.|||||.|||||.|||||||||||||||||.||.|||||
RBAM_002320__   1546 GCGACACAAGAACACGTCAACCTGAGCATCCGCGGAAACGTGAAGGAAGT   1595

BSNT_00348___   1596 TGCCGCTCGCGGAGCAAACACATGCATCATCTCACTGAAAGGCCTAGACG   1645
                     .||.||.|||||.||.|||||.|||||||||||.|||||||||.||||.|
RBAM_002320__   1596 CGCAGCCCGCGGCGCCAACACTTGCATCATCTCGCTGAAAGGCTTAGAAG   1645

BSNT_00348___   1646 ATGCGGATGACAGATTCGTACTGCCGGAAGTAAACCCAGCGCTTGCTCCG   1695
                     |.||.||.|||||||||.|.|||||||||||.|||||.||||||||||||
RBAM_002320__   1646 ACGCAGACGACAGATTCATCCTGCCGGAAGTCAACCCTGCGCTTGCTCCG   1695

BSNT_00348___   1696 TTGGTATCTGTTGTTCCATTGCAGCTGATCGCTTACTATGCTGCACTGCA   1745
                     .|||||||||||||.|||||||||||||||||||||||.|||||||||||
RBAM_002320__   1696 CTGGTATCTGTTGTGCCATTGCAGCTGATCGCTTACTACGCTGCACTGCA   1745

BSNT_00348___   1746 TCGCGGCTGTGATGTGGATAAACCTCGTAACCTTGCGAAGAGTGTTACTG   1795
                     .|||||||||||.||.||||||||.||.|||||||||||||||||.||||
RBAM_002320__   1746 CCGCGGCTGTGACGTTGATAAACCGCGCAACCTTGCGAAGAGTGTGACTG   1795

BSNT_00348___   1796 TGGAGTAA   1803
                     ||||.||.
RBAM_002320__   1796 TGGAATAG   1803


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