Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01385 and RBAM_002500

See Amino acid alignment / Visit BSNT_01385 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence dna-align/BSNT_01385___yfiL.1.9828.seq
#    -bsequence dna-align/RBAM_002500___yfiL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01385___yfiL-RBAM_002500___yfiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01385___yfiL-RBAM_002500___yfiL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01385___yfiL
# 2: RBAM_002500___yfiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1086
# Identity:     606/1086 (55.8%)
# Similarity:   606/1086 (55.8%)
# Gaps:         300/1086 (27.6%)
# Score: 1470.0
# 
#
#=======================================

BSNT_01385___      1 GTGCTGCAAGCAGAAAACATCAAA--AAGGCATATGGAAAAAAAA-----     43
                            |.||        ||.||  ||.|.|| |.||.|||.||     
RBAM_002500__      1 -------ATGC--------TCGAATTAACGGAT-TTGACAAAGAAGTACG     34

BSNT_01385___     44 ----------------CAATCGTGAAAGGTATTTCTTTTTCCCTCCAAAA     77
                                     |||||       .|||.||..|...|.||.||||
RBAM_002500__     35 GCGATTTTACCGCTGTCAATC-------ATATATCACTGCGCGTCGAAAA     77

BSNT_01385___     78 GGGGGAGTCGTTCGGTCTGCTCGGGCCAAACGGTGCCGGGAAGTCCACAA    127
                     .||.|||...|||||||||||.||.||||||||.|||||.||.||.||||
RBAM_002500__     78 AGGCGAGATATTCGGTCTGCTGGGACCAAACGGCGCCGGTAAATCAACAA    127

BSNT_01385___    128 CCATCTCGATGATTTCCGGCCTTGTG---CCGCATGACAGCG---GGAAC    171
                     |..|.||||||||   |.||...|||   ||||    ||.||   |||||
RBAM_002500__    128 CGGTGTCGATGAT---CAGCACCGTGCTCCCGC----CAACGGGCGGAAC    170

BSNT_01385___    172 ATCACGGTGGGCGGCTATGT-CAT---CGGA--------AAAGAAACGGC    209
                     |               ||.| |||   ||||        |.||.|.|.||
RBAM_002500__    171 A---------------ATCTGCATTGACGGAACCTCATTACAGGAGCAGC    205

BSNT_01385___    210 CAAAGCG---AAACAAAAA---ATCGGCATTGTTCCGCAGGAAATTGCAT    253
                     |  .|||   |.|.|||||   ||.||..|.||.|||||||||||.||.|
RBAM_002500__    206 C--TGCGGCCATAAAAAAAGTGATGGGAGTCGTCCCGCAGGAAATCGCTT    253

BSNT_01385___    254 TATATC---CGACACTGACG-GCTCATGAGAAT----CTTATGTTTT-GG    294
                     ||||||   ||    |.|.| ||..|.||.|||    |||   |||| ||
RBAM_002500__    254 TATATCAAGCG----TTAAGCGCAAAGGATAATTTGGCTT---TTTTCGG    296

BSNT_01385___    295 GGGAAAATGTACGGACTTACGCACGGTGAGGCCAAAA------AAA----    334
                     |||  ..|||||||||||.|   ||||.|||    ||      |||    
RBAM_002500__    297 GGG--TCTGTACGGACTTTC---CGGTAAGG----AACTTTGTAAACGGG    337

BSNT_01385___    335 --GATCGGCAGAGGTCCTTGA-AT-ATGTCGGTCTGACTG----AGCGGG    376
                       |||     ||.||.||.|| || ||   .|..|.||.|    ||||  
RBAM_002500__    338 TTGAT-----GAAGTGCTGGACATCAT---CGAATTACAGGAACAGCG--    377

BSNT_01385___    377 CTAAAGAT--AAG---AT-TGAAACGTTCTCCGGGGGGATGAAACGAAGA    420
                         |.||  |||   || |||   |||.||.||.||.||||||.||.|.
RBAM_002500__    378 ----ACATCAAAGGGTATCTGA---GTTTTCAGGCGGCATGAAAAGACGG    420

BSNT_01385___    421 ATCAACATCGGTGCGGCTTTAATGCATAAGCCCGAGCTGCTGATTATGGA    470
                     .|.||.|||||.||.||..|||||.||.|.||..|.||..|.|||.|.||
RBAM_002500__    421 GTGAATATCGGGGCCGCGCTAATGAATGAACCTAAACTATTCATTTTAGA    470

BSNT_01385___    471 TGAACCGACTGTCGGTATTGACCCTCAATCGAGAAATCACATTTTAGAAA    520
                     |||||||||.|||||.|||||.||.|||||.|||.|.||.|||.|.||||
RBAM_002500__    471 TGAACCGACCGTCGGAATTGATCCGCAATCCAGACACCATATTCTTGAAA    520

BSNT_01385___    521 CGGTCAA------AAAGCTCAACGAAACGGGCATGACGGTGATCTATACG    564
                     |.||.||      |||  |||| ||||..||.|||||.||.|||||||||
RBAM_002500__    521 CCGTGAAGACGTTAAA--TCAA-GAAAAAGGGATGACCGTCATCTATACG    567

BSNT_01385___    565 AGTCATTACATGGAAGAGGTTGAGTTTTTATGCGACAGGATCGG-GATAA    613
                     ||||||||||||||||||||.||.|...|.||.|| |..|.||| |||.|
RBAM_002500__    568 AGTCATTACATGGAAGAGGTCGAATACCTCTGTGA-AAAAGCGGCGATCA    616

BSNT_01385___    614 TTGATCAGGGGGAAATGATTGCGATTGGCAC-AAAAACTGATTT------    656
                     |.|||||.||...|||.|||||....||.|| |||.|| ||.||      
RBAM_002500__    617 TGGATCACGGCTCAATCATTGCCTGCGGGACGAAAGAC-GAATTGAAGCA    665

BSNT_01385___    657 GTGCAGCC---GCCTTGGGGGC-GATACC---ATC----ATTCAGCTCAC    695
                     || |||||   ||||      | ||||||   |||    ||.|||   |.
RBAM_002500__    666 GT-CAGCCAAAGCCT------CTGATACCCTGATCGTGAATGCAG---AG    705

BSNT_01385___    696 GGTCAGCGGAATCGATGAAGCGTTTCTTTTGGCG--------ATCCG---    734
                     ||   ||.||||| ||||.||           ||        |||||   
RBAM_002500__    706 GG---GCTGAATC-ATGACGC-----------CGTTAAAAAAATCCGCCG    740

BSNT_01385___    735 ---TTCCCTGGCTCATGT------GAATGATGTAACAGTCCAGGAGTCAG    775
                        ||||  ||    |||      |..||.|||  ||| ||||    |||
RBAM_002500__    741 CATTTCC--GG----TGTTGCCGAGGCTGCTGT--CAG-CCAG----CAG    777

BSNT_01385___    776 AACTCAAAATT--GA----CATTTCTGCGGCTCATCATGAGAAAGTCGTC    819
                     |.|     |||  ||    |.|.||||||||..|||    |.||      
RBAM_002500__    778 ACC-----ATTACGATGCTCGTCTCTGCGGCAGATC----GCAA------    812

BSNT_01385___    820 ACGAGTCTGCTTGCTGAAGCCGCTGCTCATCATAT-----AAACCTGCTG    864
                          |.|.||||.|      ..|||..||.||||     ||||| |.|.
RBAM_002500__    813 -----TATCCTTGAT------ATTGCGGATGATATTAGGAAAACC-GGTA    850

BSNT_01385___    865 TCTC-----------TTCAGGTGCAGGAACCGAATCTGGAGCGCCTGTTT    903
                     ||.|           ||||..|..|||||.|.||||||||..||.|.||.
RBAM_002500__    851 TCACCATTAAAGGCATTCATTTCGAGGAAGCCAATCTGGAAAGCATTTTC    900

BSNT_01385___    904 CTGAATCTGACAGGCCGCACGTTGCGGGAT---TAG    936
                     ||....||.||.|||...|||.||||||||   |||
RBAM_002500__    901 CTCCGGCTTACCGGCAAAACGCTGCGGGATTCATAG    936


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