Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01388 and RBAM_002520
See
Amino acid alignment /
Visit
BSNT_01388 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:05
# Commandline: needle
# -asequence dna-align/BSNT_01388___yfiN.1.9828.seq
# -bsequence dna-align/RBAM_002520___yfiN1.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01388___yfiN-RBAM_002520___yfiN1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01388___yfiN-RBAM_002520___yfiN1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01388___yfiN
# 2: RBAM_002520___yfiN1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1483
# Identity: 644/1483 (43.4%)
# Similarity: 644/1483 (43.4%)
# Gaps: 665/1483 (44.8%)
# Score: 1095.0
#
#
#=======================================
BSNT_01388___ 1 ---------------------------------GTGAAA----------A 7
.||||| |
RBAM_002520__ 1 ATGACGCAGCTGTTATTCATGATCAGACATCAGCTGAAACTGATGCTGCA 50
BSNT_01388___ 8 AAAT---TCTAGCCA--TTTGCGGCATTGAGCTTT------CTCTCATTT 46
|||| .|| |||| ||||||.| |.||| |.|||.||.
RBAM_002520__ 51 AAATCGGGCT-GCCATCTTTGCGAC-----GATTTCCGCCCCGCTCCTTC 94
BSNT_01388___ 47 TTAAGAAGCCACAGAACTATTTGATCATGTTTGCTGCCCCGCTTTTGCTT 96
| |||| ||||| |||||.|||
RBAM_002520__ 95 T--------CACA----TATTT-------------------CTTTTCCTT 113
BSNT_01388___ 97 ACCTTTGTATTTGGGAGTATGCTCAGCGGCAATGATG-ATAAAGTGCGGC 145
..||..|.| |||.|| |||||.| ||.||.| |||
RBAM_002520__ 114 TTCTGCGGA--TGGCAG-----TCAGCAG-AAGGAAGTATA--------- 146
BSNT_01388___ 146 TTGCAATCGTTGATCAGGACGACA----CGATTCTCTCACAGCACTAT-- 189
|| |.|.||||.||||..|.| |.||| ||||.|.||
RBAM_002520__ 147 -TG---TAGCTGATGAGGATCAGAGCGCCTATT------CAGCGCAATTT 186
BSNT_01388___ 190 ---------ATTCGGCAGCTAAAGGCG--CATGATAATATGTATACATTC 228
||||.| ||||.|| ||| |||| |.|| || |
RBAM_002520__ 187 ATGAAAATGATTCAG-----AAAGCCGGCCAT-ATAA-AAGT---CA--C 224
BSNT_01388___ 229 GAA--------AGCATGT-CTGAAAACAAAGCGTCA-------GATA--- 259
||| ||.|.|| .|.|||||||||..||| ||||
RBAM_002520__ 225 GAAGGTCACGGAGGACGTATTAAAAACAAAGGTTCATCATCAGGATATAT 274
BSNT_01388___ 260 ---------AGCTGAAAC-------------AAAAGAAA--ATTGCCGGG 285
.|||| |.| ||.|||.| |||..|.||
RBAM_002520__ 275 CCTTTGGATTGCTG-ATCGGCTCTCATTTTGAAGAGACATTATTTTCCGG 323
BSNT_01388___ 286 A-------TCATCG--TCATTTCCCGCTCGTTCCAGACACAGCTG--GAA 324
| |.|.|| |||||| .|.|||| .|| |||
RBAM_002520__ 324 AGATGAATTGAACGTTTCATTT--------ATTCAGA-----ATGAAGAA 360
BSNT_01388___ 325 AAAGGCAAACATCCTG------------AGCTGATTTTCCGTCACGGCCC 362
||.|| ..||.||| |||||||| ||.|
RBAM_002520__ 361 AAGGG---TGATGCTGTTTTGACAGAGCAGCTGATT----------GCGC 397
BSNT_01388___ 363 CGAGCTGTCGGAAGCGCCGATGGTCAAACAAT--------ATGCAGAAAG 404
|||.|.|||..||||.|| |||.||| ||||| ||||
RBAM_002520__ 398 --AGCAGGCGGGCGCGCTGA-----AAAAAATAGTCCGCGATGCA-AAAG 439
BSNT_01388___ 405 CACATTGGCAACGCTCAATATTCAGGTTACCGCGGCGAAAACGGCAGCT- 453
|| ||| |.|||| || |||
RBAM_002520__ 440 -----TG----------ATA-------TCCCGC-------AC----GCTG 456
BSNT_01388___ 454 CAGACAG-CGGGAGAGAGCTGGAAGGCGGCGTATAAAACAGTTTTCGCCA 502
||.||.| ||||| ||| ||||||| |.|.|.|.|
RBAM_002520__ 457 CACACCGACGGGA---AGC----AGGCGGC------AGCTGATCT----- 488
BSNT_01388___ 503 AAAAACATGAAG---ATTCAG--------CTCCGGC--TGTAAAACGACA 539
|.||||| |||||| |.|||.| |||..|.||.||
RBAM_002520__ 489 -----CTTGAAGGATATTCAGGGTCATTCCGCCGTCAATGTTGACCGCCA 533
BSNT_01388___ 540 GACGCTCAGCGATAAAAAAGAGGGTGCGGAAGCGAGTGACA--CAGCCTC 587
||| ||.|.|..||| ||| |||| |||||..
RBAM_002520__ 534 -----TCA-CGTTTATGAAG-----------GCG---GACAGGCAGCCGA 563
BSNT_01388___ 588 CAGAGC--AGCAGGCTTT--------TCCATCCTGTTTGTCATGCTGACC 627
|||| | |.|.||.||| |..|||..|||.|| |||.|.||
RBAM_002520__ 564 CAGA-CTTATCGGGTTTTTAGTGATGTTTATCTGGTTCGT--TGCAGTCC 610
BSNT_01388___ 628 ATGATGGGAGCGGCTGGAACCATTT-TAGA--AGCAAGAAAAAACGGCGT 674
| .||| |||..|.||||| |||| |.||||||||
RBAM_002520__ 611 A------AAGC--CTGCGATCATTTATAGATGAACAAGAAAA-------- 644
BSNT_01388___ 675 CTGGTC----------CAGATTGCT------------------TACAGCC 696
|| ||||||||| |||.||.
RBAM_002520__ 645 ----TCATACATATGACAGATTGCTGAGCACGCCCGTTTCCTATACGGCA 690
BSNT_01388___ 697 TCTGTCAGCCGAGTGGAAATC---------GGTGCTGGGTATGTGCTGTC 737
|.| |.|||| |..||.|.||||.| |.||
RBAM_002520__ 691 TAT------------GCAATCTCTAAGTTTGCGGCGGCGTATCT--TTTC 726
BSNT_01388___ 738 ---CTTCT--------TTGTCAT--TGGCTG------GATTCAATTTG-- 766
||||| |.||.|| |.|||| .||||| ||
RBAM_002520__ 727 GGTCTTCTCCATATTATCGTGATCCTCGCTGCCGGAACATTCA---TGCT 773
BSNT_01388___ 767 GCATATTGCTTCTTTCAACCCATTGGCTGA--------TTGGCATCAACT 808
|||||| ||..||.||||| ||| ||
RBAM_002520__ 774 GCATAT------------CCGTTTTGCTGATCATGTTTTTG-------CT 804
BSNT_01388___ 809 GGGGGAATCCGGCTGCGGTTATTG-----TATTAGTGTCACTTTTTCTAT 853
|.|||| |||||..||| |..|.|| |
RBAM_002520__ 805 GCGGGA--------GCGGTGCTTGCGGCCTGCTCGT-------------T 833
BSNT_01388___ 854 TGACCGTTGTCGGCATTGGATTGA------TGATTGCGGCCAATGTCAGA 897
|| ||.||.|.|| ||.|..|| ||||..||..| ||| .|||
RBAM_002520__ 834 TG--CGCTGACTGC--TGTAACGATGGCCGTGATACCGTTC-ATG-AAGA 877
BSNT_01388___ 898 ACGCCAGAACAGCAGCTCGCGTTTGGCAACTTG-TTCG----TCATCGCA 942
||| ||.||||..||.||| ..|||| |||| |.||.||
RBAM_002520__ 878 --GCC--AAAAGCAATTCACGT-----CGCTTGCTTCGGTTTTTATAGC- 917
BSNT_01388___ 943 ACATGT-ATGGTGAGCGGGATGTATTGGCCGA--------TCGACATT-- 981
||| | |||| |.||||||..|| || |||||
RBAM_002520__ 918 ---TGTCA-------CGGG-TTTATTGGGAGAGGCTTTCTTC-ACATTAG 955
BSNT_01388___ 982 -----GAACCGAAATTTATGCA-AT-CCATCGCTGAATTTCTTCCGCAAA 1024
|..||..|.|..||||| || |..|||.|| |||..|||..|||
RBAM_002520__ 956 ACGCGGCTCCAGAGTACATGCAGATGCTGTCGTTG--TTTACTCCTGAAA 1003
BSNT_01388___ 1025 AGTGGGCGATGAGCGGG----------CTGACGGAGATTATCGCTAACGG 1064
..||||||||..|||.| .||.|||||
RBAM_002520__ 1004 TATGGGCGATCGGCGCGTTTCAAAACAATGGCGGAG-------------- 1039
BSNT_01388___ 1065 TGCCCGCGTCA--CAGATATTCTCGGAATCTG---CGGCATCTTGCTTGC 1109
||..|| ||||||.|..|| ||| |.|..|||||| |||
RBAM_002520__ 1040 -----GCAGCATGCAGATAGTGCCG----CTGAGCCTGTTTCTTGC-TGC 1079
BSNT_01388___ 1110 TTTTGCAGC-----------AATCACTT-----------TCG-------- 1129
...|||||| .||||||| |||
RBAM_002520__ 1080 CGGTGCAGCGTCATTGGTCTTATCACTTTATATGATAAATCGTCATATGA 1129
BSNT_01388___ 1130 ----CAGCGGGGCTTAAGGCGCTCCGAGCCTAA 1158
.|.||| |||.
RBAM_002520__ 1130 AAAAAAACGG---TTAG---------------- 1143
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.