Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00372 and RBAM_002570

See Amino acid alignment / Visit BSNT_00372 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_00372.1.9828.seq
#    -bsequence dna-align/RBAM_002570___ybyB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00372-RBAM_002570___ybyB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00372-RBAM_002570___ybyB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00372
# 2: RBAM_002570___ybyB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 273
# Identity:     168/273 (61.5%)
# Similarity:   168/273 (61.5%)
# Gaps:          54/273 (19.8%)
# Score: 530.0
# 
#
#=======================================

BSNT_00372         1 ATGAAACAAAAGCTGTTACTTTCAGGTCTCGCTGTTTCAACTGTCGGCAT     50
                     .||||||||||.|||.|..|||||||.||.||.||.||.||||||||..|
RBAM_002570__      1 GTGAAACAAAAACTGCTCATTTCAGGACTTGCCGTGTCGACTGTCGGAGT     50

BSNT_00372        51 CACTTCTTATCTATTAAAAGACCCGTCAAATCGCCAAAAGGCAAGA-GAA     99
                     .|||||.||.||..|.|||||....|||||.||||||||||  .|| |||
RBAM_002570__     51 GACTTCCTACCTGCTCAAAGATAAATCAAACCGCCAAAAGG--TGATGAA     98

BSNT_00372       100 -TTCATTCACAGCATGAAGATGAAAATAAC---------AAAACAGCCAG    139
                      ||.||.|.|      ||.|||||||.|.|         .||.|||   |
RBAM_002570__     99 CTTTATCCGC------AATATGAAAACATCGCTCTCCGGGAAGCAG---G    139

BSNT_00372       140 ACATGGAAACGTTCCCAGTTGATAAAGCCGGCCACCCTGA-CCCGCAAGA    188
                     |.||.|||.|.|||||.||..|.|||||.|||.||||..| |||| ||||
RBAM_002570__    140 ATATTGAATCATTCCCCGTCAACAAAGCAGGCAACCCGCATCCCG-AAGA    188

BSNT_00372       189 TA-----------------GTTTCAGAAGGCTCCATGTATCCCGTCCAAT    221
                     ||                 ||.||.||||||||||||||.||.||.||||
RBAM_002570__    189 TATTGAAGATAATAAAATGGTATCCGAAGGCTCCATGTACCCGGTTCAAT    238

BSNT_00372       222 ACTACGATGA-------------    231
                     |.||.|||||             
RBAM_002570__    239 ATTATGATGACAAGAAGAAATAA    261


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