Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00385 and RBAM_002640

See Amino acid alignment / Visit BSNT_00385 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_00385.1.9828.seq
#    -bsequence dna-align/RBAM_002640___ybfE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00385-RBAM_002640___ybfE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00385-RBAM_002640___ybfE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00385
# 2: RBAM_002640___ybfE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 331
# Identity:     116/331 (35.0%)
# Similarity:   116/331 (35.0%)
# Gaps:         170/331 (51.4%)
# Score: 380.0
# 
#
#=======================================

BSNT_00385         0 --------------------------------------------------      0
                                                                       
RBAM_002640__      1 ATGAAACAAGATTCGCTCACACTGAATCAAATGAAAATGTGTTTCACTGA     50

BSNT_00385         0 --------------------------------------------------      0
                                                                       
RBAM_002640__     51 ACCGCCCCTCACCTTCCAACATACTGTCAAAATCGTATGTACAGTTACAT    100

BSNT_00385         0 --------------------------------------------------      0
                                                                       
RBAM_002640__    101 TCATCACGTTATATATCTTTTTTTTCAGCACTCATTTTAATGATTTGATT    150

BSNT_00385         1 ---------------ATGTTTTTTGCCTTGATCGGCCTTTTTTTGGGTTT     35
                                    |||.||||.|.|.||..||||| ||.|||||.||.
RBAM_002640__    151 GAAATGGCTCTGCAGATGGTTTTCGGCCTGGCCGGCC-TTGTTTGGATTA    199

BSNT_00385        36 TTATCGTTTCCCCATTTTCAAG-AAATTTCAAATTTCTGAACGCTTCAAA     84
                     ||...||.|..||.|||||||| |||.|.|||.|.|||||.||.||||.|
RBAM_002640__    200 TTGCTGTATTTCCGTTTTCAAGAAAAATCCAAGTGTCTGACCGTTTCAGA    249

BSNT_00385        85 CAAAAATCCGAAAACGCCCGCATAGTCGGTATGATCAACTTCGTATTAGA    134
                     ||||||||.||||||.||||.||...|||.|||||..||||.||..|.||
RBAM_002640__    250 CAAAAATCTGAAAACACCCGTATCACCGGAATGATAGACTTTGTCCTCGA    299

BSNT_00385       135 ACAAAAATACAAAAAAAGCATCTCTGAATAA    165
                     ||||..|||||||.|.|..|||..|.||   
RBAM_002640__    300 ACAACGATACAAAGACATGATCAGTTAA---    327


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.