Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_00407 and RBAM_002700

See Amino acid alignment / Visit BSNT_00407 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence dna-align/BSNT_00407___pssA.1.9828.seq
#    -bsequence dna-align/RBAM_002700___pssA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00407___pssA-RBAM_002700___pssA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00407___pssA-RBAM_002700___pssA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00407___pssA
# 2: RBAM_002700___pssA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 545
# Identity:     396/545 (72.7%)
# Similarity:   396/545 (72.7%)
# Gaps:          40/545 ( 7.3%)
# Score: 1485.5
# 
#
#=======================================

BSNT_00407___      1 ------------------ATGATTACGATAGGAAACTTCATTTGCGGATT     32
                                       ||||||||.||.|||||.||.||||||||..|
RBAM_002700__      1 GTGAATTATATACCTAGTATGATTACAATTGGAAATTTTATTTGCGGGCT     50

BSNT_00407___     33 GCTGGCGATTCATTCCTTGCTATATCACAACATTCATTCAGCAGTGCTTT     82
                     ..|..|||||||||||.|..|.|||||.||.||.||.||.||.|||.|||
RBAM_002700__     51 CTTATCGATTCATTCCCTTTTGTATCATAATATACACTCTGCGGTGATTT    100

BSNT_00407___     83 TTATTTTTACAGGCATGTTCCTTGATTTCTTTGACGGGATGGCTGCTCGT    132
                     |||||||.||.||.|||||.||||||||||||||.||..||||.||.|||
RBAM_002700__    101 TTATTTTCACCGGGATGTTTCTTGATTTCTTTGATGGTTTGGCCGCCCGT    150

BSNT_00407___    133 AAGCTGAATGCCGTTTCTGATATGGGGAGAGAACTGGATTCGTTTGCCGA    182
                     ||||||||.||.||.||.||.|||||.||.||.||.||.||.|||||.||
RBAM_002700__    151 AAGCTGAACGCGGTATCGGAGATGGGAAGGGAGCTTGACTCTTTTGCTGA    200

BSNT_00407___    183 TCTGGTTACGTTTGGGGTGGCTCCTTCTATGCTTGCTTACAGTGTCGCGT    232
                     |||.||.|||||.||.||.||.||.||.|||||.|||||||||||..|..
RBAM_002700__    201 TCTCGTGACGTTCGGCGTTGCGCCGTCCATGCTCGCTTACAGTGTTTCAC    250

BSNT_00407___    233 TGTATACCCTGCCATTTATCGGGATCTTA--TGCGCATTGACGTACAGCA    280
                     |.|||||..|.||.||.|||||.||.|||  .||||.||  |.|||||.|
RBAM_002700__    251 TATATACGATTCCGTTCATCGGAATTTTAATCGCGCTTT--CCTACAGTA    298

BSNT_00407___    281 TTTGCGGAATGCTTCGCCTCTCTAAATTTAACATTGAACAAAGCAAGCTC    330
                     |.|||||.|||.|.||.||.||.|.||||||.|||||||||||||||||.
RBAM_002700__    299 TCTGCGGGATGATCCGTCTTTCCAGATTTAATATTGAACAAAGCAAGCTG    348

BSNT_00407___    331 CCGACGTTTATCGGTATGCCGATTCCGTTTGCGGGCATGTGTCTCGTTAT    380
                     ||||||||||||||.||||||||||||||||||||.||||||||.||.||
RBAM_002700__    349 CCGACGTTTATCGGGATGCCGATTCCGTTTGCGGGTATGTGTCTTGTCAT    398

BSNT_00407___    381 TTTAAGCTTCACCTATAACCCGATCCTTCTGG---------CAATCGGCA    421
                     |||.|||||.|.|.|||||.|..|.|||||||         |.|||    
RBAM_002700__    399 TTTGAGCTTTATCAATAACGCTTTTCTTCTGGGGGCGGGAACGATC----    444

BSNT_00407___    422 CTTGCGGACTCTCATATTTGATGGTGAGTAAAATAAAATTCCCTCATTTT    471
                        |||  |||...|||||.|||||.||.||.||.|||||.||.||.|||
RBAM_002700__    445 ---GCG--CTCGGTTATTTAATGGTCAGCAACATTAAATTTCCGCACTTT    489

BSNT_00407___    472 AAAAAACATGCGGCAGAAAACCTGGAGTCTGGGAGATGGAATTAG    516
                     ||||||||.|||.|.||||||||||||....|.||||||||||||
RBAM_002700__    490 AAAAAACAGGCGCCTGAAAACCTGGAGAGCAGAAGATGGAATTAG    534


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.