Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00411 and RBAM_002730

See Amino acid alignment / Visit BSNT_00411 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence dna-align/BSNT_00411___ybfN.1.9828.seq
#    -bsequence dna-align/RBAM_002730___ybfN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00411___ybfN-RBAM_002730___ybfN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00411___ybfN-RBAM_002730___ybfN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00411___ybfN
# 2: RBAM_002730___ybfN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     182/328 (55.5%)
# Similarity:   182/328 (55.5%)
# Gaps:          92/328 (28.0%)
# Score: 494.0
# 
#
#=======================================

BSNT_00411___      1 ---------ATGG-AGAAA---------CAAATCATCAGCTGGATTACAG     31
                              |||| |||||         |||      |||||  .||.||
RBAM_002730__      1 GTGAATATTATGGAAGAAAAGGATTTGGCAA------AGCTG--ATAGAG     42

BSNT_00411___     32 -ATTATCAGAACACCGGAGA------------TGAAGCCGTCCTGCGGCA     68
                      |.||.|||.|.||.||.||            |||||||           
RBAM_002730__     43 CAGTACCAGCATACAGGGGATCAGCAAATTCTTGAAGCC-----------     81

BSNT_00411___     69 AGTGCGAGAAGTGTGCTGGCCGATCATTGAAGCGGTTTTGCA----AGAG    114
                      |||||.||.|..|||.||||..||.||||.|||.|    ||    |||.
RBAM_002730__     82 -GTGCGGGACGCATGCCGGCCTGTCGTTGAGGCGCT----CATCTCAGAA    126

BSNT_00411___    115 AAGGCAATAGATGATGAACA-AGCG---AACAATTTGCGCGAAAAAGGAA    160
                     ..|||         ||||.| ||||   |.| .||||||.|.||||||..
RBAM_002730__    127 CTGGC---------TGAAGACAGCGCCTATC-TTTTGCGGGCAAAAGGCC    166

BSNT_00411___    161 TCGAGCGGTTTCCATTCATCATCAGCAAATACCA---AGCGGATGTGCAG    207
                     ..||.||.|||||.||.||.|||.||||.||.||   .||||..| ||  
RBAM_002730__    167 GTGACCGTTTTCCGTTTATTATCGGCAAGTATCAGACCGCGGCCG-GC--    213

BSNT_00411___    208 CTTCCGGTTGAGACATTTTTACGAAATACGTATCGGTTTTACTTTCATCA    257
                     |||.||.|||||||.|||||.||.||.||||||||||||||.|||||.||
RBAM_002730__    214 CTTTCGCTTGAGACCTTTTTGCGCAACACGTATCGGTTTTATTTTCAGCA    263

BSNT_00411___    258 GGTGATGAGAGAATCCAGCTAA------    279
                     |||..|.|.||      ||.||      
RBAM_002730__    264 GGTTTTAAAAG------GCGAAGCGTGA    285


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