Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00424 and RBAM_002760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_00424___ybgE.1.9828.seq
# -bsequence dna-align/RBAM_002760___ybgE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00424___ybgE-RBAM_002760___ybgE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00424___ybgE-RBAM_002760___ybgE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00424___ybgE
# 2: RBAM_002760___ybgE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1128
# Identity: 791/1128 (70.1%)
# Similarity: 791/1128 (70.1%)
# Gaps: 114/1128 (10.1%)
# Score: 2694.0
#
#
#=======================================
BSNT_00424___ 1 ---TTGAATAAGCTTATTGAA----------------CGAGAAAAAACTG 31
||||||.|.||.|||||| |.||||||
RBAM_002760__ 1 TTGTTGAATCAACTGATTGAAAGACGTAAGGTCACAGCAAGAAAA----- 45
BSNT_00424___ 32 TATATTATAAGGAAAAGCCCGAC-CCGTCTTCCTTGGGGTTTGGACAA-T 79
|||||.||.||| ||| ||||.||||||||||| ||| |
RBAM_002760__ 46 -----------GAAAAACCGGACTCCG-CTTCATTGGGGTTTGG-CAAGT 82
BSNT_00424___ 80 ATTTTACAGATTATATGTTTGTGATGGACTACGAAGAGGGGATTGGATGG 129
|.||.||||||||.||||||||.|||||.||||||||||.||..||.|||
RBAM_002760__ 83 ACTTCACAGATTACATGTTTGTCATGGATTACGAAGAGGAGAGAGGGTGG 132
BSNT_00424___ 130 CATCATCCGAGAATTGCGCCGTACGCACCGCTTACGCTTGATCCGTCTTC 179
|||.||||||||||..|.||.||.|.||||.|....||.|||||.||..|
RBAM_002760__ 133 CATGATCCGAGAATCACCCCTTATGAACCGGTCCATCTGGATCCTTCCGC 182
BSNT_00424___ 180 ATCTGTTTTTCATTACGGCCAGGCTGTTTTTGAAGGATTAAAAGCATACA 229
|||.|||||.||||||||.|||||.||.||||||||..|.||.||.||||
RBAM_002760__ 183 ATCGGTTTTCCATTACGGGCAGGCCGTATTTGAAGGGCTGAAGGCTTACA 232
BSNT_00424___ 230 GAACAGACGACGGCAGAGTGCTGCTGTTCCGTCCGGATCAAAATATCAAA 279
|..||||.||||||.|.||..||.||||||||||.||.||||||||.|||
RBAM_002760__ 233 GGTCAGAAGACGGCCGGGTATTGATGTTCCGTCCTGACCAAAATATAAAA 282
BSNT_00424___ 280 CGGCTGAACAGATCGTGTGAGCGCATGAGCATGC--CCTCTTTAGACGAA 327
||||||||.|.|||||....|||.|||||||||| |||||| |||||.
RBAM_002760__ 283 CGGCTGAATAAATCGTTACGGCGGATGAGCATGCCGCCTCTT--GACGAG 330
BSNT_00424___ 328 GAGCTGGTCCTTGAGGCATTGACACAATTAGTTGAGCTGGAGAAAGATTG 377
.||||||..||.||||||||||.||||||.||.|||||||||.|.||.||
RBAM_002760__ 331 AAGCTGGCGCTGGAGGCATTGATACAATTGGTGGAGCTGGAGCAGGAATG 380
BSNT_00424___ 378 GGTTCC-AAAGAAAAAAGGAACGTCACTGTATATTCGTCCTTTTGTCATT 426
|.|.|| |.|| ||||||||||.||..|.|||||.|||||.|||||.|||
RBAM_002760__ 381 GATACCGATAG-AAAAAGGAACCTCTTTATATATCCGTCCGTTTGTAATT 429
BSNT_00424___ 427 GCCACAGAACCGAGTCTCGGTGTGAAGGCATCCAGG-------AGCTATA 469
||.||.||.|| .|.|..||||.||| || |||..||
RBAM_002760__ 430 GCGACTGAGCC--------TTCTTTAGGCGTCC-GGCCGTCAAAGCGTTA 470
BSNT_00424___ 470 CA--TTTATGATCGTGCTTTCGCCTGTCGGCTCCTATTATGGCGACGATC 517
|| ||.|||.|.||.||..||||||||||.||.||.|| ||.|||||
RBAM_002760__ 471 CAAGTTCATGGTAGTTCTGACGCCTGTCGGTTCGTACTA---CGGCGATC 517
BSNT_00424___ 518 AGCTGAAGCCGGTTAGAATCTATGTCGAAGATGAGTATGTGCGGGCGGTC 567
|||||||.|||.|..|.||.|||||.||.||||||||||||||.||.|||
RBAM_002760__ 518 AGCTGAAACCGATCCGTATTTATGTGGAGGATGAGTATGTGCGTGCCGTC 567
BSNT_00424___ 568 AACGGAGGAGTCGG----GTTTGCAAAAACGGCTGGAAACTATGCCGCCA 613
|.|||.|||||.|| || .||||||.|.|||||.|||||.||||
RBAM_002760__ 568 ACCGGCGGAGTGGGCGACGT----CAAAACGTCCGGAAATTATGCGGCCA 613
BSNT_00424___ 614 GTCTT-CAGGCACAGCGGAAAG-CGAATGAACTGGGCTATGACCAGGTAC 661
| ||| |||||.|||||||||| |||| ||||||||.|||||.|||||.|
RBAM_002760__ 614 G-CTTACAGGCTCAGCGGAAAGCCGAA-GAACTGGGGTATGATCAGGTGC 661
BSNT_00424___ 662 TGTGGCTGGACGCCATCGAAAAGAAATATGTGGAAGAAGTAGGGAGCATG 711
|.|||||.||||...|.|||||||||||||..|||||.||||||||.|||
RBAM_002760__ 662 TTTGGCTCGACGGGGTGGAAAAGAAATATGCCGAAGAGGTAGGGAGTATG 711
BSNT_00424___ 712 AACATCTTTTTCGTCATAAACGGGGAAGCTGTCACACCTGCTTTAAGCGG 761
||.|||||||||.||||||||||.||.||.||.||.||.||.||||.|||
RBAM_002760__ 712 AATATCTTTTTCATCATAAACGGAGAGGCCGTAACGCCGGCGTTAAACGG 761
BSNT_00424___ 762 AAGCATTTTAAGCGGGG---TTACACGTGCGTCTGCGATTGAATTGATTC 808
|||||||.| ||||| |.|||||.||.||||.|||.||..||.|..
RBAM_002760__ 762 AAGCATTCT---CGGGGGCATCACACGCGCATCTGTGATAGAGCTGTTAA 808
BSNT_00424___ 809 GAAGCTGGGGCATTCCGGTTCGTGAAGAGAGAATA--TCG--ATTGATGA 854
.||||||||||| |||| |||.|.|..||||.| ||| ||||||||
RBAM_002760__ 809 AAAGCTGGGGCA-TCCG---CGTCAGGGAAGAACAGGTCGCCATTGATGA 854
BSNT_00424___ 855 GGTGTATGCGGCCTCTGC----ACGCGGAGAATTGACAGAGGTCTTCGGC 900
..|.||||.|| |||| | |.||.||..||.|||||||.|||||.
RBAM_002760__ 855 CATCTATGAGG---CTGCGATGA-GAGGCGAGGTGTCAGAGGTATTCGGT 900
BSNT_00424___ 901 ACAGGCACGGCAGCCGTCGTTACGCCTGTCGGTGAACTCAACATTCATGG 950
||.||.||.||.||||||.|..||||.|||||.|..||..|||||||.||
RBAM_002760__ 901 ACGGGAACCGCGGCCGTCATCTCGCCGGTCGGCGCGCTGCACATTCACGG 950
BSNT_00424___ 951 AAAAACGGTGATTG-------TAGGAGACGGGCAAATCGGGGACCTCTCG 993
|.|||| ||||| || ||||....|||||.||..|.||.
RBAM_002760__ 951 AGAAAC---GATTGAACTGAATA----ACGGTTTGATCGGTGAAGTGTCA 993
BSNT_00424___ 994 AAAAAGCTGTATGAAACGATAACAGATATTCAGCTTGGCAAGGTGAAAGG 1043
.|||.|||.|||||||||||..|.|..||.||..|.||.||||||...|.
RBAM_002760__ 994 GAAAGGCTCTATGAAACGATTGCCGGCATCCAAGTCGGGAAGGTGCGGGA 1043
BSNT_00424___ 1044 CCCGTTTAACTGGACAGTGGAAGTGTGA 1071
..||||.|..|||...||.|||||.|.|
RBAM_002760__ 1044 TTCGTTCAGATGGGTGGTTGAAGTATAA 1071
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