Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00426 and RBAM_002770

See Amino acid alignment / Visit BSNT_00426 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_00426___ybgF.1.9828.seq
#    -bsequence dna-align/RBAM_002770___ybgF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00426___ybgF-RBAM_002770___ybgF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00426___ybgF-RBAM_002770___ybgF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00426___ybgF
# 2: RBAM_002770___ybgF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity:    1037/1430 (72.5%)
# Similarity:  1037/1430 (72.5%)
# Gaps:         109/1430 ( 7.6%)
# Score: 3833.0
# 
#
#=======================================

BSNT_00426___      0 --------------------------------------------------      0
                                                                       
RBAM_002770__      1 ATGAACAACAAGAACGAGACGAATTTTCAGAGAAGTATGAAAAGCAGACA     50

BSNT_00426___      1 -------ATGCTTTC-CTTGGGAGGTGTCATCGGAACCGGGCTGTTTTTA     42
                            |||||.|| ||| ||||||||.||||||||.||||||||||||
RBAM_002770__     51 CCTCTTTATGCTATCACTT-GGAGGTGTGATCGGAACGGGGCTGTTTTTA     99

BSNT_00426___     43 AGCTCAGGTTATACCATTCAGCAAGCAGGCCCGGCCGGAACGATACTCGC     92
                     |||||.||.|||||||||||.||.||.||.|||||.||.||.||..||||
RBAM_002770__    100 AGCTCTGGGTATACCATTCATCAGGCGGGTCCGGCGGGCACCATTTTCGC    149

BSNT_00426___     93 CTACTTAGTCGGTGCCGGCATCGTCTATCTGGTCATGCTCTGCCTCGGTG    142
                     .|||.|..|.||.||.||||||||||||||.||||||||.|||||.||||
RBAM_002770__    150 TTACCTTTTGGGCGCGGGCATCGTCTATCTTGTCATGCTTTGCCTTGGTG    199

BSNT_00426___    143 AGCTGTCAGTCGCCATGCCTGTGACCGGCGCCTTTCACACCTATGCAGCC    192
                     |.||||||||.||||||||.|||||.|||||.||.|||||||||   ||.
RBAM_002770__    200 AACTGTCAGTGGCCATGCCGGTGACGGGCGCATTCCACACCTAT---GCG    246

BSNT_00426___    193 AAA---TACATAGGGCCGGGCACCGGATTTACGGTCGCTTGGCTGTACTG    239
                     |||   ||.||.|||||.|..||.||.||||||||.||.|||||||||||
RBAM_002770__    247 AAAACCTATATCGGGCCCGCGACGGGCTTTACGGTAGCATGGCTGTACTG    296

BSNT_00426___    240 GCTGACATGGACCGTGGCATTGGGATCAGAATTCACAGCAGCCGGCCTGT    289
                     ||||||.|||.|.|||||..||||.||.||||||||.||.|||||.||.|
RBAM_002770__    297 GCTGACGTGGGCGGTGGCGCTGGGCTCTGAATTCACGGCGGCCGGGCTTT    346

BSNT_00426___    290 TAATGCAGCGCTGGTTCCCCCATACATCGGTTTGGATGTGGAGTGCCGTC    339
                     |.||||||||.||||||||.|||||.||.|||||||||||||||||.||.
RBAM_002770__    347 TCATGCAGCGTTGGTTCCCGCATACTTCAGTTTGGATGTGGAGTGCGGTA    396

BSNT_00426___    340 TTTGCGCTGTTCATTTTCTTGCTTAACGCATTTTCGGTCAAGTTTTTCGC    389
                     ||.||.||.|||||.||.||..|.|||||.||.||.||.||.|||||.||
RBAM_002770__    397 TTCGCTCTTTTCATCTTTTTATTAAACGCCTTCTCCGTGAAATTTTTTGC    446

BSNT_00426___    390 TGAATCAGAATTTTGGTTTTCCAGCATCAAAGTATTAGCCATTGTATTAT    439
                     ||||||.||.||||||||.||.|||||.|||||.||||||||..||.|.|
RBAM_002770__    447 TGAATCGGAGTTTTGGTTCTCAAGCATTAAAGTCTTAGCCATCTTACTGT    496

BSNT_00426___    440 TTATTCTTTTAGGCGGCTCTGCCATGTTTGGCATCATTCCGATCAAAGGC    489
                     |||||.|.||.|||||..|.||.|||||.||||||.|.|||||.|||.||
RBAM_002770__    497 TTATTTTATTGGGCGGAGCGGCGATGTTCGGCATCGTCCCGATGAAAAGC    546

BSNT_00426___    490 GGAGAAGCCGCTCCGATGCTGTCCAACTTCATGGCGGAAGGCG---GGCT    536
                     ||.||.|||||.||.||||||||.|||||.|   ||||.||||   |.||
RBAM_002770__    547 GGTGAGGCCGCACCTATGCTGTCGAACTTTA---CGGATGGCGGCAGCCT    593

BSNT_00426___    537 TTTTCCAAATGGATTTGTCCCGATTTTGATGACGATGCTGTCCGTTAATT    586
                     ||||||||||||.|||.|||||||..|||||||||||||.||.||.||.|
RBAM_002770__    594 TTTTCCAAATGGCTTTTTCCCGATACTGATGACGATGCTTTCAGTAAACT    643

BSNT_00426___    587 TTGCCTTTTCGGGAACGGAACTAATCGGAATCGCAGCCGGTGAAAGCGTT    636
                     ||||.|||||.||.||||||.|.|||||||||||.||.||.|||||||..
RBAM_002770__    644 TTGCTTTTTCAGGGACGGAATTGATCGGAATCGCCGCAGGGGAAAGCGCC    693

BSNT_00426___    637 GATCCTGACAAGACAATACCAAAAGCG----ATTAAAACAACGGTCTGGC    682
                     |||||.||.||.||..|.||    |||    |||||.||.||.|||||||
RBAM_002770__    694 GATCCGGAAAAAACCGTTCC----GCGCGCCATTAAGACCACAGTCTGGC    739

BSNT_00426___    683 GTCTCTCACTCTTCTTTGTCGGAACAATTTTTGTGCTGTCAGGGCTGAT-    731
                     |.||..|.||.||||||.|.|||||.||||||||||||||||||.||.| 
RBAM_002770__    740 GGCTGGCGCTTTTCTTTATAGGAACGATTTTTGTGCTGTCAGGGATGGTC    789

BSNT_00426___    732 TCCGATTCAA-GATGCAGGTGTCATCAAAAGCCCGTTTGTCGCTGTCTTT    780
                     |||  .|||| ||.||.|||||.||..||||||||||.|||.|.||.|||
RBAM_002770__    790 TCC--ATCAAGGAAGCCGGTGTGATTGAAAGCCCGTTCGTCACGGTATTT    837

BSNT_00426___    781 GACAGAGTCGGTGTACCATACGCAGCCGATATCATGAACTTTGTTATCCT    830
                     |||||||||||.||.||.||.||.||||||.|.|||||.||.||.||..|
RBAM_002770__    838 GACAGAGTCGGCGTGCCTTATGCGGCCGATCTGATGAATTTCGTCATTTT    887

BSNT_00426___    831 GACAGCGATCCTGTCAGCGGCTAATTCCGGACTCTACGCTTCTTCCCGGA    880
                     .||.|||.|.|||||.|||||.|||||.||.||.|||||.||.||.||.|
RBAM_002770__    888 AACGGCGCTTCTGTCTGCGGCCAATTCAGGGCTGTACGCGTCATCACGTA    937

BSNT_00426___    881 TGCTGTGGTCTTTATCAAAAGAA----AAAACGCTTCATCCGACATTTGC    926
                     ||||||||||..|.||.||||||    |    |||||||||..|.|||||
RBAM_002770__    938 TGCTGTGGTCCCTGTCTAAAGAAGGGGA----GCTTCATCCCGCCTTTGC    983

BSNT_00426___    927 AAAGCTGACGTCAAAAGGAACCCCTTTTAACGCGCTGGTGTTCAGCATGA    976
                     .|.||||||.||.|||||.|..|||||||||||.|||.|.|||||.||||
RBAM_002770__    984 CAGGCTGACCTCTAAAGGCATTCCTTTTAACGCTCTGATCTTCAGTATGA   1033

BSNT_00426___    977 TCGGCGGCATTCTGTCGTTGCTGTCCAGCGTATTTGCGCCAGACACTGTA   1026
                     ||||||||||||||||||||.||||.|||||||||||..|.||.||.||.
RBAM_002770__   1034 TCGGCGGCATTCTGTCGTTGTTGTCAAGCGTATTTGCAGCGGATACAGTC   1083

BSNT_00426___   1027 TACGTTGTGCTCGTGTCGATTTCCGGTTTTGCCGTCGTTGTCGTGTGGAT   1076
                     ||..||||.|||||.||..|.||.||.|||||.||.||.|..||||||||
RBAM_002770__   1084 TATCTTGTTCTCGTCTCCGTCTCAGGATTTGCGGTAGTGGCTGTGTGGAT   1133

BSNT_00426___   1077 GGGAATCGCTGCTTCTCAATTCATGTTCAGAAAACG-----TTATATCGA   1121
                     |.|.|||||.||.||.|||||..|||||.|||.|||     |||.|  ||
RBAM_002770__   1134 GAGCATCGCCGCATCGCAATTTTTGTTCCGAAGACGGTTTCTTACA--GA   1181

BSNT_00426___   1122 AGCGGGAAACAAGGTTACTGATTTGAAATACAGAACCCCTTTGTATCCGT   1171
                     |   ||..||.||.||.|.||.|||||||||||.||.||....||||||.
RBAM_002770__   1182 A---GGGCACCAGCTTTCAGACTTGAAATACAGGACGCCGGGATATCCGG   1228

BSNT_00426___   1172 TCGTGCCGATTGCTGCGTTCCTGTTATGCCTGGCTTCCGTTGTTGGCATT   1221
                     .|||.|||||.||.||.||.||..|.|||||.||.|||..|.|.|||||.
RBAM_002770__   1229 CCGTACCGATAGCGGCCTTTCTCCTGTGCCTCGCCTCCTGTATCGGCATC   1278

BSNT_00426___   1222 GCCTTTGATCCGAATCAAAGAATCGCACTCTATTGCGGCGTTCCATTTAT   1271
                     ||.|||||||||||.||....|||||.||.||||||||..||.|||||||
RBAM_002770__   1279 GCTTTTGATCCGAACCAGGCCATCGCCCTTTATTGCGGAATTGCATTTAT   1328

BSNT_00426___   1272 GGCCATTTGCTATGCAATATATTATGTAAAAAACCGCAAAAGC-CAGCCG   1320
                     ||||.|||||||..|....|||||..|.||||||||.|||||| .||||.
RBAM_002770__   1329 GGCCGTTTGCTACACCGCTTATTACTTGAAAAACCGGAAAAGCAGAGCCC   1378

BSNT_00426___   1321 GC-TGCTGATATGACTT--ATTCAAAATAA   1347
                     || |||    |.|.|.|  |.||..|||||
RBAM_002770__   1379 GCGTGC----AAGCCGTAAAATCCCAATAA   1404


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