Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00945 and RBAM_002880

See Amino acid alignment / Visit BSNT_00945 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:38
# Commandline: needle
#    -asequence dna-align/BSNT_00945___ydfO.1.9828.seq
#    -bsequence dna-align/RBAM_002880___ydfO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00945___ydfO-RBAM_002880___ydfO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00945___ydfO-RBAM_002880___ydfO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00945___ydfO
# 2: RBAM_002880___ydfO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 939
# Identity:     835/939 (88.9%)
# Similarity:   835/939 (88.9%)
# Gaps:           0/939 ( 0.0%)
# Score: 3759.0
# 
#
#=======================================

BSNT_00945___      1 ATGGCGAAAAAAACGATGGGAATTCATCATATTACAGCGATTGTCGGTCA     50
                     ||||||||||||||||||||.||.||||||||||||||.|||||||||||
RBAM_002880__      1 ATGGCGAAAAAAACGATGGGCATCCATCATATTACAGCAATTGTCGGTCA     50

BSNT_00945___     51 CCCTCAAGAGAACACAGATTTCTACGCAGGAGTGCTTGGGCTTCGTTTGG    100
                     ||||||||||||..|.|||||||||||.||||||||.|||||.||.||||
RBAM_002880__     51 CCCTCAAGAGAATGCTGATTTCTACGCTGGAGTGCTGGGGCTGCGATTGG    100

BSNT_00945___    101 TCAAGCAAACTGTCAATTTTGATGACCCAGGTACGTATCATCTTTATTTT    150
                     ||||||||||.||||||||||||||.||.|||||||||||.|||||||||
RBAM_002880__    101 TCAAGCAAACGGTCAATTTTGATGATCCGGGTACGTATCACCTTTATTTT    150

BSNT_00945___    151 GGGAATGAAGGCGGGAAGCCGGGAACAATCATTACCTTCTTTCCGTGGGC    200
                     |||.||||||||||||||||||||||||||||.||.||||||||||||||
RBAM_002880__    151 GGGGATGAAGGCGGGAAGCCGGGAACAATCATCACATTCTTTCCGTGGGC    200

BSNT_00945___    201 CGGAGCCCGCCAAGGCGTCATTGGAGACGGTCAAGTTGGCGTGACTTCGT    250
                     .||.||||||||||||.|||||||||||||.||.|||||||||||.||.|
RBAM_002880__    201 GGGCGCCCGCCAAGGCATCATTGGAGACGGACAGGTTGGCGTGACATCTT    250

BSNT_00945___    251 ATGTCGTGCCGAAAGGGGCTATGGCATTTTGGGAAAAGAGACTAGAAAAG    300
                     |.|.|||||||||.||.||.|||||.|||||||||||||||||.||||||
RBAM_002880__    251 ACGCCGTGCCGAAGGGTGCCATGGCGTTTTGGGAAAAGAGACTTGAAAAG    300

BSNT_00945___    301 TTCAACGTTCCCTACACCAAAATCGAGCGCTTTGGGGAACAATATGTAGA    350
                     ||||||.||||.|||||.|||||||||||.|||||.|||||||||.||||
RBAM_002880__    301 TTCAACATTCCATACACAAAAATCGAGCGTTTTGGAGAACAATATATAGA    350

BSNT_00945___    351 ATTTGATGATCCTCATGGACTGCACTTAGAAATCGTGGAAAGAGAAGAAG    400
                     |||||||||.||.|||||.|||||.||||||||||||||||||||||.||
RBAM_002880__    351 ATTTGATGACCCGCATGGCCTGCATTTAGAAATCGTGGAAAGAGAAGCAG    400

BSNT_00945___    401 GAGAGGCTAATACGTGGACTTTCGGAGATGTAACGCCCGATGTTGCCATT    450
                     |.|||||.||||||||||||||||||||||||||.||.||||||||||||
RBAM_002880__    401 GGGAGGCCAATACGTGGACTTTCGGAGATGTAACCCCGGATGTTGCCATT    450

BSNT_00945___    451 AAAGGTTTTGGGGGTGCAACCCTATTATCAGCGCAGCCTGACAAAACCGC    500
                     |||||.|||||.|||||.|||||.||||||||.||||||||.|||||.|.
RBAM_002880__    451 AAAGGCTTTGGCGGTGCGACCCTGTTATCAGCACAGCCTGAAAAAACAGG    500

BSNT_00945___    501 TGAGCTTTTAGAAAACATCATGGGGCTGGAACGAGTCGGCAAAGAAGGAG    550
                     |.|.||..|.|||||||||||||||||.||.||||||||.||||||||||
RBAM_002880__    501 TAAACTGCTGGAAAACATCATGGGGCTTGAGCGAGTCGGTAAAGAAGGAG    550

BSNT_00945___    551 ACTTCGTTCGTTATCGTTCCGCCGGTGATATCGGAAATGTGATTGACCTT    600
                     |||||||||||||||||||.||||||||||||||||||||||||||||||
RBAM_002880__    551 ACTTCGTTCGTTATCGTTCTGCCGGTGATATCGGAAATGTGATTGACCTT    600

BSNT_00945___    601 AAGTTAACGCCTATTGGCCGCGGGCAAATGGGGGCCGGAACGGTGCATCA    650
                     ||||||||||||||.|||||||||||||||||.|.|||.|||||.|||||
RBAM_002880__    601 AAGTTAACGCCTATCGGCCGCGGGCAAATGGGTGTCGGCACGGTCCATCA    650

BSNT_00945___    651 CATCGCTTGGCGGGCTAACGATGATGAAGATCAGTTAGATTGGCAAAGAT    700
                     ||||||||||||||||.|.|||||.||||||||.||||||||||||||.|
RBAM_002880__    651 CATCGCTTGGCGGGCTCAGGATGACGAAGATCAATTAGATTGGCAAAGGT    700

BSNT_00945___    701 ATATTGCTTCCCATGGATATGGTGTAACTCCTGTTCGGGATAGAAACTAC    750
                     ..||||||.|.||.|||||||||||.||||||||||.||||||||||||.
RBAM_002880__    701 TCATTGCTGCGCACGGATATGGTGTGACTCCTGTTCAGGATAGAAACTAT    750

BSNT_00945___    751 TTTAATGCCATTTACTTCAGGGAACATGGGGAAATCCTGTTTGAAATCGC    800
                     ||||||||..||||||||||.|||||||||||||||.|.|||||.|||||
RBAM_002880__    751 TTTAATGCGGTTTACTTCAGAGAACATGGGGAAATCTTATTTGAGATCGC    800

BSNT_00945___    801 AACTGATCCCCCTGGCTTTGCACATGATGAAACACAGGATACAATGGGCG    850
                     |||||||||.||.||||||||.||||||||..||||.||.||||||||||
RBAM_002880__    801 AACTGATCCGCCGGGCTTTGCCCATGATGAGTCACAAGAAACAATGGGCG    850

BSNT_00945___    851 AAAAACTGATGCTGCCTGTACAATATGAACCGCATCGCACACAAATTGAA    900
                     .||||||||||||.||||..||.|||||||||||.||..|||||||||||
RBAM_002880__    851 GAAAACTGATGCTCCCTGAGCAGTATGAACCGCACCGGGCACAAATTGAA    900

BSNT_00945___    901 CAAGGGCTGCTGCCGTTTGAAGTAAGAGAGTTAGATTGA    939
                     |||||||||||||||||||||||.|||||.|||||||||
RBAM_002880__    901 CAAGGGCTGCTGCCGTTTGAAGTGAGAGAATTAGATTGA    939


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