Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00480 and RBAM_003010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00480___lip.1.9828.seq
# -bsequence dna-align/RBAM_003010___lip.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00480___lip-RBAM_003010___lip.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00480___lip-RBAM_003010___lip.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00480___lip
# 2: RBAM_003010___lip
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 660
# Identity: 469/660 (71.1%)
# Similarity: 469/660 (71.1%)
# Gaps: 36/660 ( 5.5%)
# Score: 1564.5
#
#
#=======================================
BSNT_00480___ 1 ATGAAATTTGTAAAA---AGAAGGATCGTTGCACTTGTAACAATTTTGAT 47
||||||..|.||||| |.||...|.||||..||| |||.|||..||
RBAM_003010__ 1 ATGAAACATATAAAAAACAAAATTCTAGTTGTCCTT---ACAGTTTGTAT 47
BSNT_00480___ 48 GCTGTCTGTTACATCGCTGTTTGCGTTGCAGCCGTC---AGCAAAAG--- 91
||||||.||.|..||..|.|||||.||.||||||.| |.|.||||
RBAM_003010__ 48 GCTGTCCGTCATTTCCGTATTTGCCTTCCAGCCGACCGTATCGAAAGCCT 97
BSNT_00480___ 92 CCGCTGAACACAATCCAGTCGTTATGGTTCACGGTATTGGAGGGGCATCA 141
||.|.|..||.||.||.||.||.|||||.|||||.||.||.|||||.||.
RBAM_003010__ 98 CCTCAGGGCATAACCCTGTTGTCATGGTCCACGGAATCGGCGGGGCGTCC 147
BSNT_00480___ 142 TTCAATTTTGCGGGAATTAAGAGCTATCTCGTATCTCAGGGCTGGTCGCG 191
||.||.||.||||||||.||.|..||..|.|.|||.||.||||||||..|
RBAM_003010__ 148 TTTAACTTCGCGGGAATCAAAACATACTTGGCATCCCAAGGCTGGTCAAG 197
BSNT_00480___ 192 GGACAAGCTGTATGCAGTTGATTTTTGGGACAAGACAGGCACAAATTATA 241
..|..||.||||.||..|.|||||.|..|||||.||.|| |||..|.|
RBAM_003010__ 198 AAAAGAGATGTACGCCATCGATTTCTTAGACAAAACCGG---AAACAACA 244
BSNT_00480___ 242 ---ACAATGGACCGGTATTATCACGATT-TGTGCAAAAGGT-TTTAGATG 286
||||||..|||..|.|.|| |.||| .|||.||||.|| .|.|| .|
RBAM_003010__ 245 GACACAATGCGCCGAGACTGTC-CAATTACGTGAAAAAAGTGCTCAG-CG 292
BSNT_00480___ 287 AAACGGGTGCGAAAAAAGTGGATATTGTCGCTCACAGTATGGGGGGCGCG 336
||||.||||||||||||||.|||||.|||||.|||||.|||||.|||||.
RBAM_003010__ 293 AAACAGGTGCGAAAAAAGTCGATATCGTCGCGCACAGCATGGGCGGCGCC 342
BSNT_00480___ 337 AACACACTTTACTACATAAAAAATCTGGACGGCGGAAATAAAGTTGCAAA 386
|||||.||.||.|||||.||||||||.|||||||||.|.|||.|.|||||
RBAM_003010__ 343 AACACGCTCTATTACATTAAAAATCTTGACGGCGGAGACAAAATCGCAAA 392
BSNT_00480___ 387 CGTCGTGACGCTTGGCGGCGCGAA---CCGTTTGACGACAGGCAA---GG 430
||||||.||.||.|||||.||||| ||.|.|||| ||| ||
RBAM_003010__ 393 CGTCGTCACACTGGGCGGAGCGAACGGCCTTGTGAC------CAACCGGG 436
BSNT_00480___ 431 CGCTTCCGGGAACAGATCCAAATCAAAAGATTTTATACACATCCATTTAC 480
||||||||||.||.|||||.||.||||||||||||||.|||||.||||||
RBAM_003010__ 437 CGCTTCCGGGGACTGATCCGAACCAAAAGATTTTATATACATCGATTTAC 486
BSNT_00480___ 481 AGCAGTGCCGATATGATTGTCATGAATTACTTATCAAGATTAGAT-GGTG 529
|||...||.||..|.||.|||.||||.....|.|||.|..| ||| ||.|
RBAM_003010__ 487 AGCTCAGCGGACTTAATCGTCCTGAACCCGCTGTCACGGCT-GATCGGCG 535
BSNT_00480___ 530 CTAGAAACGTTCAAATCCATGGCGTTGGACACATCGGCCTTCTGTACAGC 579
..|.||||||.||.||.||.||.||.|||||||||||.|||.||...|.|
RBAM_003010__ 536 GGAAAAACGTGCAGATTCACGGTGTCGGACACATCGGACTTTTGATGAAC 585
BSNT_00480___ 580 AGCCAAGTCAACAGCCTGATTAAAGAAGGGCTGAACGGCGGGGGCCAGAA 629
||||||||.|||.|.||||||||||||||.|||||||||||.||.||.||
RBAM_003010__ 586 AGCCAAGTAAACGGGCTGATTAAAGAAGGTCTGAACGGCGGCGGACAAAA 635
BSNT_00480___ 630 TACGAATTAA 639
|||.||||||
RBAM_003010__ 636 TACAAATTAA 645
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