Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00482 and RBAM_003020

See Amino acid alignment / Visit BSNT_00482 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:14
# Commandline: needle
#    -asequence dna-align/BSNT_00482___yccF.1.9828.seq
#    -bsequence dna-align/RBAM_003020___yccF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00482___yccF-RBAM_003020___yccF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00482___yccF-RBAM_003020___yccF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00482___yccF
# 2: RBAM_003020___yccF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1114
# Identity:     844/1114 (75.8%)
# Similarity:   844/1114 (75.8%)
# Gaps:          80/1114 ( 7.2%)
# Score: 3144.5
# 
#
#=======================================

BSNT_00482___      1 GTGGGAAAAGTGAAACGAAATGCCCCTTGCCCATGCGGCAGCGGCAAGAA     50
                     |||||||||||||||.||||||||||||||||||||||||||||.|||||
RBAM_003020__      1 GTGGGAAAAGTGAAAAGAAATGCCCCTTGCCCATGCGGCAGCGGGAAGAA     50

BSNT_00482___     51 ATATAAAAAATGCTGCGGAAGTAAAGTTGTCGACTTCCCGGCGGAACTAG    100
                     |||||||||||||||||||||.||||..|..|.|.|.|||||.||..|.|
RBAM_003020__     51 ATATAAAAAATGCTGCGGAAGCAAAGAAGCTGCCATTCCGGCAGACATCG    100

BSNT_00482___    101 CGGCAAAAGAAGCGAAACAAATTCAGGAAGACTTAGTGGAGTATGCCTTC    150
                     |||||||||||||||||||.|||||||||..|.||.|||||||.|||||.
RBAM_003020__    101 CGGCAAAAGAAGCGAAACAGATTCAGGAAAGCCTAATGGAGTACGCCTTT    150

BSNT_00482___    151 ACAGTACATAGAGAAAGCATTTCAGGCTTTATCAACCAGCATGATTTTCT    200
                     ||||.|||||||||..||||.|||...|||||.||||||||.|..||..|
RBAM_003020__    151 ACAGCACATAGAGACGGCATATCATCATTTATTAACCAGCACGCGTTCAT    200

BSNT_00482___    201 TTCTGCTATGGACAGACAGACGAAAGACATCAGCGTATTTAACTTAGGAA    250
                     |.|.|...|||||||||||||.|||||||||.|.||.||.|||.|.||.|
RBAM_003020__    201 TACGGAGCTGGACAGACAGACAAAAGACATCGGAGTCTTCAACCTCGGCA    250

BSNT_00482___    251 TCTGGGGAATCTTCTTCCACCCGCTTGCTGGTGAGAAGACAATCTTCGAA    300
                     ||||||||||.|||||||..|||||.||.||.|..|||||.||.||.|||
RBAM_003020__    251 TCTGGGGAATTTTCTTCCGTCCGCTGGCAGGCGGCAAGACGATTTTTGAA    300

BSNT_00482___    301 GAGTACCTTCAGAAAAAAGGCGATTCG--ATCACTCGTCCGAAAACGCGT    348
                     ||.||.|||||||||||||.||  .||  ||||..||.||||||||.||.
RBAM_003020__    301 GAATATCTTCAGAAAAAAGCCG--GCGGCATCAACCGCCCGAAAACACGG    348

BSNT_00482___    349 GAGATCGTAGAATCATGGCAGAGCATGACGCCTG-CTTTAT--TGCTGCT    395
                     ||.|||||.|||||||||.|.||||||||.|||| |.||||  ||||  |
RBAM_003020__    349 GAAATCGTTGAATCATGGAAAAGCATGACACCTGCCGTTATGGTGCT--T    396

BSNT_00482___    396 GAAGGACCTGAAGGAAGGCATCATTCACTTTGAAGATGTGATTACGGCA-    444
                     ||| ||..|||..|||||.||.||||||||||||||||||||.||  || 
RBAM_003020__    397 GAA-GATGTGAGAGAAGGAATGATTCACTTTGAAGATGTGATGAC--CAA    443

BSNT_00482___    445 -AAACAATTCGAAGTGGAAATGGACGCCAGCAATCAAGACCTTCCTCCAG    493
                      |||||||||.|||||||||||||||.||||.|.||.||.|||||.||.|
RBAM_003020__    444 GAAACAATTCAAAGTGGAAATGGACGTCAGCCAGCAGGATCTTCCGCCGG    493

BSNT_00482___    494 TGGGAAGCCTGATTCTTGGATACCCAATCCACGAAGCGGAAAAAGCAGAA    543
                     .|||||||||||||||.||.||.||.||||||||||||||||||||.||.
RBAM_003020__    494 CGGGAAGCCTGATTCTCGGCTATCCGATCCACGAAGCGGAAAAAGCGGAG    543

BSNT_00482___    544 TTCTTCATGCAGTTCACGATCTTCCCGGTGAAGAGAACAGAAGCGCTGAT    593
                     |||||||||||.||.|||||||||||.||||||.|..|.|||||.||.||
RBAM_003020__    544 TTCTTCATGCAATTTACGATCTTCCCTGTGAAGCGGGCCGAAGCTCTAAT    593

BSNT_00482___    594 CAGCAAGGTGAAGAAATATGCGGATGCC---GCTGT----GAAGGACGGC    636
                     ||||||.||   ||||.|.||||.||||   |||.|    ||||||    
RBAM_003020__    594 CAGCAAAGT---GAAAAAGGCGGCTGCCCCGGCTCTTGCGGAAGGA----    636

BSNT_00482___    637 AAAACGCCGGAGGACTTCATGAAGCAGGAA---TTCAACAACGTTCTGTT    683
                     |||.||||.|||..|||.||   |||||||   |||.|||..||.|||..
RBAM_003020__    637 AAATCGCCTGAGCGCTTTAT---GCAGGAAAACTTCGACATTGTGCTGGC    683

BSNT_00482___    684 CGCGTTGTTAGCTGAGAA-AGATGAAGAGCCAAAAGCAG--------AG-    723
                     |||..|.||||    ||| .|..|||||||| ..|||||        || 
RBAM_003020__    684 CGCTCTTTTAG----GAACGGCGGAAGAGCC-TGAGCAGGCTGCTGAAGA    728

BSNT_00482___    724 AAAGCGGAAGTAAGCACTGTTGAGTGGGCAAACGACTTGGAGAAAGAAAC    773
                     |||.|.||      ||     ||||||||.||||||.|||||||.|||||
RBAM_003020__    729 AAAACAGA------CA-----GAGTGGGCCAACGACATGGAGAAGGAAAC    767

BSNT_00482___    774 CGCTGCGGCTATTGAAGAAGGCATGAGCGGGGAAGAGTATCCGACTGAAT    823
                     .||.|..||.||||||.|||||.||||||||||.||.||.|||.||||..
RBAM_003020__    768 GGCAGACGCCATTGAAAAAGGCCTGAGCGGGGATGAATACCCGGCTGAGC    817

BSNT_00482___    824 TGATCCCAGCTGTTATTGCCATC--TGGAAAACATTCTGCGAGAAAAAAT    871
                     ||.|.||.||.||.||||  |||  ||||||||.|||||.|..||||||.
RBAM_003020__    818 TGGTTCCGGCCGTAATTG--ATCTGTGGAAAACGTTCTGTGTCAAAAAAA    865

BSNT_00482___    872 CACCTGTC-ATCAGAAAGCCGGAAGCTTTTGCGGCGGCAGTTGAATATTA    920
                     |||| |.| |||||||||||.||||||||.||||||||.||.||||||||
RBAM_003020__    866 CACC-GACGATCAGAAAGCCTGAAGCTTTCGCGGCGGCGGTCGAATATTA    914

BSNT_00482___    921 TGTAAAC-GCGATTTCTCTTAACGGCGCGTCCGTTTCCCAGGCTAAACTG    969
                     .|||||| || ||||||||.|||||||||||||||||.||.||.||.|||
RBAM_003020__    915 CGTAAACAGC-ATTTCTCTGAACGGCGCGTCCGTTTCTCAAGCCAAGCTG    963

BSNT_00482___    970 GCGAAAAAATACGGCGTCAGTGCATCAACGATTTCCAGCCGTTACAAAGA   1019
                     |||||.||.|||||||||||.||.|||||||||||||||||.||.||.||
RBAM_003020__    964 GCGAAGAAGTACGGCGTCAGCGCCTCAACGATTTCCAGCCGCTATAAGGA   1013

BSNT_00482___   1020 AATTGAAAG------CACGCTGCAAGATGAAGCAGATCGTTTTGCACAAG   1063
                     |||.||..|      ||||      ||||||||.||.||.||.||...||
RBAM_003020__   1014 AATCGAGGGTGCTCTCACG------GATGAAGCCGAACGCTTCGCCGCAG   1057

BSNT_00482___   1064 CGTTATCCTCATAA   1077
                     |..|..|.||.|||
RBAM_003020__   1058 CTCTGACATCTTAA   1071


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