Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00498 and RBAM_003070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_00498.1.9828.seq
# -bsequence dna-align/RBAM_003070___ycdD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00498-RBAM_003070___ycdD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00498-RBAM_003070___ycdD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00498
# 2: RBAM_003070___ycdD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 511
# Identity: 296/511 (57.9%)
# Similarity: 296/511 (57.9%)
# Gaps: 122/511 (23.9%)
# Score: 1043.0
#
#
#=======================================
BSNT_00498 0 -------------------------------------------------- 0
RBAM_003070__ 1 ATGAAACGACCAGTCAGAATTGCGCTGCTTTTGATCCTCTTCTTTTCCGC 50
BSNT_00498 0 -------------------------------------------------- 0
RBAM_003070__ 51 AGACCTATGTTTTTCCTATGTGCAGAAAGAATTGAGGCCGCAGACGGCAT 100
BSNT_00498 1 ------AT---GCCTGTCCCCTCGGATCTTCATCCGATTGTGAAGCAGAA 41
|| |||..|||...| |.||||||||||.|.|||||.|||||
RBAM_003070__ 101 TACAAGATAGAGCCATTCCAAGC-GCTCTTCATCCGCTCGTGAAACAGAA 149
BSNT_00498 42 TGCCGA-----TGCACTCAAAGCCGCTGCAGC-GAATAAAGGCATTACCG 85
|||.|| |||| .|..|||||| | |||.||||||||.||||
RBAM_003070__ 150 TGCGGAGCTATTGCA--GACGGCCGCT----CTGAAAAAAGGCATCACCG 193
BSNT_00498 86 TCGTCATTACTGAAGGATTTAGGTCCTTTAAGGAACAAGATGAATTATAT 135
||||.||.||.||.||.||.||.||..||.||||||||.|.|||||.||.
RBAM_003070__ 194 TCGTTATCACAGAGGGTTTCAGATCAATTGAGGAACAAAACGAATTGTAC 243
BSNT_00498 136 AAACAGGGACGTACAAAAAAAGGGAATATTGTCACCTATGCAAGAGGAGG 185
...||.||||||.||||||||||.|||||.||||||||.||||.|||.||
RBAM_003070__ 244 CGTCAAGGACGTTCAAAAAAAGGAAATATCGTCACCTACGCAAAAGGCGG 293
BSNT_00498 186 GGAATCGTATCATAACTATGGTTTAGCGATTGATTTCGCCCTTCAAAAAA 235
||||||.||.||.||.||.||..|.|||||.||.||||||||.|||||||
RBAM_003070__ 294 GGAATCTTACCACAATTACGGCCTTGCGATCGACTTCGCCCTGCAAAAAA 343
BSNT_00498 236 AGGATGGAAGCATCATATGGGATATGGAATATGACGGCAATCAAAACGGA 285
|||||||||||.|.||.|||||||||...||.|||||.||.|.||||||.
RBAM_003070__ 344 AGGATGGAAGCCTGATTTGGGATATGACGTACGACGGAAACCGAAACGGC 393
BSNT_00498 286 AAATCAGATTGGCTGGAGGTTGTCGAGATCGCTAAGACACTCGGTTTTGA 335
|...|.||||||||.|||||.||...|||.||.||.||.|||||||||||
RBAM_003070__ 394 ACGCCCGATTGGCTTGAGGTCGTATCGATTGCCAAAACGCTCGGTTTTGA 443
BSNT_00498 336 ATGGGGCGGGGATTGGAAACGATTCAAGGACTACCCCCACTTGGAGATGA 385
.|||||.||.|||||||.|.|.||.||.||.||.||.||.||..|.||||
RBAM_003070__ 444 TTGGGGAGGCGATTGGAGAGGCTTTAAAGATTATCCTCATTTACAAATGA 493
BSNT_00498 386 TTCCTAACTAG 396
|.|||..|||.
RBAM_003070__ 494 TCCCTGGCTAA 504
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