Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00510 and RBAM_003140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_00510.1.9828.seq
# -bsequence dna-align/RBAM_003140___yceB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00510-RBAM_003140___yceB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00510-RBAM_003140___yceB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00510
# 2: RBAM_003140___yceB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1008
# Identity: 373/1008 (37.0%)
# Similarity: 373/1008 (37.0%)
# Gaps: 528/1008 (52.4%)
# Score: 1339.5
#
#
#=======================================
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 1 GTGATTGATTTAAGCATACTTGATCAGGCGCCAGTATCCAAAGGAAACGG 50
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 51 GCCGCACGAGACGCTCCGCCGTTCCGCGGAGCTCGCCCGCCTCAGCGAAG 100
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 101 GTTGGGGCTATAAGCGGTACTGGTTTGCCGAGCATCACGGCACAAGAGGG 150
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 151 CTCGCAAGCGTTTCGCCGGAAATTATGATCGCTCATACCGCCGCAGCCAC 200
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 201 AACGTCCATCCGTGTCGGATCAGGCGGCGTGCTGCTGCCGCAGTACAGCC 250
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 251 CTTATAAAGTCGCGGAAACTTTCCGTCAGCTTGAGGCGCTGCATCCGAAC 300
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 301 CGGATTGACCTCGGGGTCGGACGCTCACCGGGCGGTACAACGAAAATCCG 350
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 351 GCTCGCCCTCACAGACGGGGTAAAGAAAAGCATGACCGAGTTCAACAGGC 400
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 401 AGCTTCAGGATTTATCATCCTTTCTGACAGATTCGGTTCCCTCGGACCAT 450
BSNT_00510 0 -------------------------------------------------- 0
RBAM_003140__ 451 GCTTATGCAGGAATAAAAACAGCGCCTTTGATTGAAACAGCCCCGCAGCT 500
BSNT_00510 1 ----GTGCTCGGTCTTGGTGAAAACAGCGCAAGACGCGCGGCGCACCAGG 46
||||||||.||.||.|||||||||||.||||||||.||.|..||.|
RBAM_003140__ 501 TTGGGTGCTCGGCCTCGGGGAAAACAGCGCCAGACGCGCCGCTCTTCAAG 550
BSNT_00510 47 GGATTGGATATGTGTTTGGGCATTTCATTAATCCCGAGCGAGGAGAAAAT 96
|....||.|||||.||.||.||||||||||||||.||.||.||.|||||.
RBAM_003140__ 551 GTGCGGGCTATGTCTTCGGCCATTTCATTAATCCGGAACGCGGGGAAAAA 600
BSNT_00510 97 GCATTCCGCATCTACCGGGAAAGCTTTCGGCCCTCAGCCCATTTTT-CGA 145
||.||.|..|||||.|||||....||.|||.||||.|||||||||| ||.
RBAM_003140__ 601 GCTTTTCAGATCTATCGGGACCATTTCCGGGCCTCCGCCCATTTTTCCGC 650
BSNT_00510 146 AACCGTC-CGCACTGTTTACGATTTTTGTCATTTGCGCAAAAACAGATGA 194
..|||.| |||.||| |.|.|||||.|||||.|||||....||.|||||
RBAM_003140__ 651 TCCCGCCTCGCTCTG--TGCCATTTTCGTCATATGCGCGGCTACGGATGA 698
BSNT_00510 195 AGAGGCAGAAGAACTCGCATTAAGCCAGGATTTGTGGCTTCTTCGCGTCG 244
..|.||.|||||||||||.||||||||||||||.|||||||||||.||||
RBAM_003140__ 699 GAAAGCGGAAGAACTCGCCTTAAGCCAGGATTTATGGCTTCTTCGTGTCG 748
BSNT_00510 245 GGAAAGGCTTGGACAGCCGCGTGCCAAGCATCGAGGAAGCCAAAGCCCAT 294
|.||||||...||||||||||||||.||..|.||||||||.||.||..||
RBAM_003140__ 749 GAAAAGGCGCCGACAGCCGCGTGCCGAGTGTGGAGGAAGCGAAGGCTTAT 798
BSNT_00510 295 CCCTACAC--------AGCGTCCGATAAAAAACTCATAGAAGAAAACAGA 336
||.||..| |.||| ||||..||||||||||||||.
RBAM_003140__ 799 CCGTATTCGCCGGAGGACCGT--------AAACAGATAGAAGAAAACAGG 840
BSNT_00510 337 AAGCGGATGGTGATCGGTTCTCCAACCACTGTCAAACAGCAG-CTGTTAG 385
|||||||||||||||||.|||||..||.|.||.|||| ||.| |||.|.|
RBAM_003140__ 841 AAGCGGATGGTGATCGGCTCTCCTGCCGCAGTGAAAC-GCCGTCTGCTTG 889
BSNT_00510 386 ACCTCACAGGCCGCTACGAAACAAATGAAATCATGGTTCTGTGCAATGTG 435
|.||..|.|..||.||..|.|||||.||.||.|||||.||||||||.||.
RBAM_003140__ 890 AACTTTCCGAGCGGTATCAGACAAAAGAGATGATGGTGCTGTGCAACGTC 939
BSNT_00510 436 TTTGATTTTGAAGCGAAAAAAGAATCGTATGAGCGCCTTGCCGGAT-TGT 484
||||||||.|||||.||||||||.||.||||||||.|||| |.||| |.|
RBAM_003140__ 940 TTTGATTTCGAAGCAAAAAAAGAGTCATATGAGCGTCTTG-CTGATATAT 988
BSNT_00510 485 TTCTATAA 492
||||.|||
RBAM_003140__ 989 TTCTGTAA 996
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