Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00516 and RBAM_003180

See Amino acid alignment / Visit BSNT_00516 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_00516___yceF.1.9828.seq
#    -bsequence dna-align/RBAM_003180___yceF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00516___yceF-RBAM_003180___yceF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00516___yceF-RBAM_003180___yceF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00516___yceF
# 2: RBAM_003180___yceF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity:     642/774 (82.9%)
# Similarity:   642/774 (82.9%)
# Gaps:           0/774 ( 0.0%)
# Score: 2682.0
# 
#
#=======================================

BSNT_00516___      1 TTGGACTTTTTACATCATATTTTGTCTACGTATGCTTCATTTTTCGATTG     50
                     |||||.|||.|||||||||||.||||.||.||.|||||.|||||.|||||
RBAM_003180__      1 TTGGATTTTCTACATCATATTATGTCGACCTACGCTTCCTTTTTTGATTG     50

BSNT_00516___     51 GAAAATGTGGGGGGAAGTTCTGACGGATCCTGTTTCCTGGGGTTTGATCG    100
                     ||||||||||||.||.||.|||||.||.|||||.||.|||||..||||||
RBAM_003180__     51 GAAAATGTGGGGTGAGGTGCTGACTGACCCTGTATCATGGGGGCTGATCG    100

BSNT_00516___    101 GTTCCCTTGTTGTTCTGGAAGGCCTTTTATCGGCCGATAACGCGCTTGTT    150
                     |||||.|.|||.|.||||||||.||..|.||||||||.||.|||.|.||.
RBAM_003180__    101 GTTCCTTGGTTCTGCTGGAAGGGCTGCTGTCGGCCGACAATGCGTTAGTG    150

BSNT_00516___    151 CTTGCGGTCATGGTTAAACACCTGCCGGAAAAACAGCGGAAAAAAGCGTT    200
                     ||||||||.|||||.|..||.|||||.||||||||||||||.|||||.||
RBAM_003180__    151 CTTGCGGTGATGGTAAGGCATCTGCCTGAAAAACAGCGGAAGAAAGCATT    200

BSNT_00516___    201 AACGTATGGTTTGTTTGGAGCTTATATTTTCAGGTTTATTTTTATCGGGC    250
                     |||.||.||.|||||.||.||.|||||||||.|.|||||.|||||||||.
RBAM_003180__    201 AACATACGGATTGTTCGGGGCATATATTTTCCGTTTTATCTTTATCGGGA    250

BSNT_00516___    251 TCGGTATGCTTCTCATTAAATTCTGGTGGATCAAGGTGCTTGGCGCGCTT    300
                     ||||.|||||.||||||||.||||||||||||||.||||||||||||||.
RBAM_003180__    251 TCGGAATGCTGCTCATTAAGTTCTGGTGGATCAAAGTGCTTGGCGCGCTG    300

BSNT_00516___    301 TACCTGGCTTGGCTCGTCATTAAGCACTTCTGGATAGGCGAAAAAGAAGA    350
                     ||||||||||||||||||||||||||.||||||||.||.|||...||.||
RBAM_003180__    301 TACCTGGCTTGGCTCGTCATTAAGCATTTCTGGATCGGAGAAGGTGATGA    350

BSNT_00516___    351 GGAAGCGGACGGCATCAAGAAAAACTCTTGGATGGTCCGCACGTTCGGGA    400
                     .||..||||.|||||.||||||||.||.|||||||||||.||||||||.|
RBAM_003180__    351 CGATACGGAAGGCATGAAGAAAAATTCATGGATGGTCCGTACGTTCGGAA    400

BSNT_00516___    401 TCTTCTGGGCGACTGTCATTTCAGTAGAATTAATGGATCTTGCCTTCTCT    450
                     |.||||||||.||||||.|||||||.||.|||||||||.|.|||||||||
RBAM_003180__    401 TTTTCTGGGCCACTGTCGTTTCAGTTGAGTTAATGGATTTGGCCTTCTCT    450

BSNT_00516___    451 GTGGACAGCATCCTGGCCGCGTTTGCAGTATCTGAAAAAGTATGGGTGCT    500
                     ||.||||||||.||||||||||||||.|||||.||||||||.||||||||
RBAM_003180__    451 GTTGACAGCATTCTGGCCGCGTTTGCGGTATCGGAAAAAGTGTGGGTGCT    500

BSNT_00516___    501 TCTGATCGGCGGTATGCTTGGTATTTTAATGATGCGTACAGTGGCAAAAG    550
                     ..|||||||||||||||||||.|||.|.||||||||||||||.|||||||
RBAM_003180__    501 CTTGATCGGCGGTATGCTTGGCATTCTCATGATGCGTACAGTCGCAAAAG    550

BSNT_00516___    551 TGTTCCTTGTGCTGATTGATAAAATTCCTGAGCTGGAAAACACAGCATTC    600
                     |.||||||||..|.|||||||||||.||||||||.|||||.||.||.||.
RBAM_003180__    551 TATTCCTTGTTTTAATTGATAAAATCCCTGAGCTTGAAAATACGGCTTTT    600

BSNT_00516___    601 GTGTTAATCGGCATTATCGCGCTGAAAATGGCGGGGAGCGCTTTCCATTA    650
                     |||.|.|||||.||||||||..||||||||||||.||||||.||..||||
RBAM_003180__    601 GTGCTGATCGGGATTATCGCCGTGAAAATGGCGGCGAGCGCCTTTGATTA    650

BSNT_00516___    651 CGAAATGCCGCACTCTGTATTCTTCATCATCATTATCGCTGCATTTGCGG    700
                     .||||||||||||...||.||||||...|||||.||||||||.||||.||
RBAM_003180__    651 TGAAATGCCGCACGTGGTGTTCTTCGGAATCATCATCGCTGCGTTTGTGG    700

BSNT_00516___    701 TAACATTGATCATTCACTACATCAATAAACAAAAGCAGGTGCGCGAACAA    750
                     ||||.||.||.||.|||||..||||.||||||||||||||.|..||.|||
RBAM_003180__    701 TAACGTTTATTATCCACTATTTCAACAAACAAAAGCAGGTTCAGGAGCAA    750

BSNT_00516___    751 ACAGCCGCTTCAAAAGAAGAATAA    774
                     ||.||.||.||.||||||||||||
RBAM_003180__    751 ACGGCTGCATCTAAAGAAGAATAA    774


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