Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00518 and RBAM_003190

See Amino acid alignment / Visit BSNT_00518 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:16
# Commandline: needle
#    -asequence dna-align/BSNT_00518___yceG.1.9828.seq
#    -bsequence dna-align/RBAM_003190___yceG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00518___yceG-RBAM_003190___yceG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00518___yceG-RBAM_003190___yceG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00518___yceG
# 2: RBAM_003190___yceG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1681
# Identity:    1200/1681 (71.4%)
# Similarity:  1200/1681 (71.4%)
# Gaps:         125/1681 ( 7.4%)
# Score: 4171.5
# 
#
#=======================================

BSNT_00518___      1 ATGAGACAAGAAGAACTAACCATTCATAAAGCACTTCCGG----CTGATG     46
                     |||||.||.||||||.|....||.|..||.||....||||    | ||| 
RBAM_003190__      1 ATGAGGCAGGAAGAATTGGTGATCCGAAAGGCCGAGCCGGAAAAC-GAT-     48

BSNT_00518___     47 GCGATTGGAAAAGCCTGCTGTTTCAGCCATTGCCG---------------     81
                       ||.|||.|||...|.|||.|.|.|||..|||||               
RBAM_003190__     49 --GACTGGGAAACGTTTCTGATGCGGCCGCTGCCGGAACGTCCCGGTTAC     96

BSNT_00518___     82 GAGCGGGATCACTATGAAACTGCACAAGGCCTTTCTTTTTCTCGTCTTGC    131
                     ||||||||        ||||       ||.||..|.|||.|.|||||.||
RBAM_003190__     97 GAGCGGGA--------AAAC-------GGGCTGGCGTTTACCCGTCTCGC    131

BSNT_00518___    132 CGGTCAGATATTGGGCACGCCTATTGATGAGACGGACTACTATAACGAGC    181
                     ||..|.|.|.||||||||.|||..||||||||||||.||.||.||..|||
RBAM_003190__    132 CGTCCGGGTTTTGGGCACTCCTTATGATGAGACGGAGTATTACAATAAGC    181

BSNT_00518___    182 TGTATGAGCTGTC------TGTAAACGACCGCATAACGATTTTGAGTGAA    225
                     |.|..||||||||      ||.||||..|  |||    .|.|||||.|||
RBAM_003190__    182 TTTTCGAGCTGTCTTCTCATGAAAACATC--CAT----GTGTTGAGCGAA    225

BSNT_00518___    226 ACGCTTGATAAAACAATCGAACCGGAAACATTTCAAAAGCTTCAGCATAT    275
                     |||||.|||||.||.||||..||.|||||.|||||...|||.|||||.||
RBAM_003190__    226 ACGCTGGATAAGACCATCGCGCCTGAAACGTTTCAGGCGCTCCAGCACAT    275

BSNT_00518___    276 TCATTCCATCAATCAGAAAGAAAAAGGGCTGTCAGTCAGCCGCTTTGTTG    325
                     .|||||..|||||||.|||||.||||||||.||.||...|.|.|||||.|
RBAM_003190__    276 CCATTCGGTCAATCAAAAAGAGAAAGGGCTTTCGGTTTCCAGATTTGTCG    325

BSNT_00518___    326 CCTTTTTGGACGGGGAAAAGCTGATTGCGAAGCACTCAAATCCCCTGATG    375
                     |.|||.|.||.||||..|.||||.||||.||.||..|..||||.||.|||
RBAM_003190__    326 CGTTTCTCGATGGGGGCAGGCTGCTTGCCAAACATGCTGATCCGCTTATG    375

BSNT_00518___    376 CACCGCCATTTAAGAAAAGCGCTGATGACGCTTTTACATACCTTTGCGGA    425
                     |||||||...|.||||..|||.|.|||||||||||..|.||||||||||.
RBAM_003190__    376 CACCGCCGGCTGAGAACCGCGTTTATGACGCTTTTGGAAACCTTTGCGGG    425

BSNT_00518___    426 CAGTCATGAAAAGGGGCTGAATCATCCTGATTTTCGCAGAGTGCTGCTT-    474
                     |.|.||||||||.||||||||||||||.|||||.||..|.||||| ||| 
RBAM_003190__    426 CCGGCATGAAAACGGGCTGAATCATCCCGATTTCCGGCGTGTGCT-CTTG    474

BSNT_00518___    475 GATGTCTCGAAGTTTTCCTTAAACCATCTGAACCCCTGGCTGGAAAAAAC    524
                     |||||.||.||||||||..|.|||||.|||||.||.|||||.|||.||.|
RBAM_003190__    475 GATGTGTCAAAGTTTTCGCTGAACCACCTGAATCCATGGCTTGAACAAGC    524

BSNT_00518___    525 CGATATAGAGCGGGAGATGCCGAAGATTGTTTGGTATGGAGATGCGACGA    574
                     ||||||||||||.||||||||||||.|.||.|||||||||||.||.||.|
RBAM_003190__    525 CGATATAGAGCGTGAGATGCCGAAGGTGGTGTGGTATGGAGACGCTACCA    574

BSNT_00518___    575 AAAGCCAGCTCTATTTCTTATATTATCTGATGCTGGTCGGCTGTGATGTA    624
                     ||||||||||||||||..|.||||||||.||||||.||||||||||.||.
RBAM_003190__    575 AAAGCCAGCTCTATTTTCTCTATTATCTCATGCTGATCGGCTGTGACGTC    624

BSNT_00518___    625 CTACTGTTCCATCCGGC--GGGAATCGATCAGCTGGC-GCTTG-TCGACC    670
                     |||.||||.||||||||  .||||  ||||.|.|  | ||||| |.||.|
RBAM_003190__    625 CTATTGTTTCATCCGGCTGCGGAA--GATCCGTT--CAGCTTGATTGATC    670

BSNT_00518___    671 CGAAGCAGGAGCTCGGTTTTACGGAAAAGCTCCCGG----ATGTTTCTGA    716
                     ||.|..||||.|||.|.|||..|..|||||||||.|    |.|    .|.
RBAM_003190__    671 CGGATGAGGAACTCAGCTTTGTGATAAAGCTCCCCGCAACAGG----CGG    716

BSNT_00518___    717 GCTTCAGCCGTTTCCGAAAGAAAAACCAGACCGGAAATCAACAGTGGCTT    766
                     .|||.||||.||.|||||||||||.||.|||.|.|..||.||...|||.|
RBAM_003190__    717 CCTTGAGCCATTCCCGAAAGAAAAGCCGGACAGAACGTCCACGACGGCCT    766

BSNT_00518___    767 ACCGCTCAACAAAGGAAATTGAACATGTGCTGAATCACGAGGAATCCATG    816
                     ||||.|||||.||.||||||||.|||||||||||.||.||||||||.|||
RBAM_003190__    767 ACCGGTCAACGAAAGAAATTGAGCATGTGCTGAACCATGAGGAATCTATG    816

BSNT_00518___    817 CTGTATAAGCCGTGGCAGTTCAGAGATCACACACCGGTGTCCGTTACGCT    866
                     .||||||||||.|||||||||||.|||||.||.|||..||||||.||..|
RBAM_003190__    817 ATGTATAAGCCTTGGCAGTTCAGGGATCATACCCCGCAGTCCGTGACATT    866

BSNT_00518___    867 GAAAACGACCTATGATGAATTGTTTTTAATCACGAAAGAACGCGCCTTTA    916
                     .||||||||.||||||||.||.|||.|.||..||||.||.||.||.||||
RBAM_003190__    867 AAAAACGACGTATGATGAGTTATTTCTCATTGCGAAGGAGCGGGCGTTTA    916

BSNT_00518___    917 TTCGGCCG-AATTTCAAAGCTGATAAACATTCCATTGAG---------AT    956
                     |.|||||| ||||| |||||.||         ||..|||         .|
RBAM_003190__    917 TCCGGCCGCAATTT-AAAGCGGA---------CAGGGAGCGGGTGGCCGT    956

BSNT_00518___    957 TCCGAATGTATTCGCCAAAATTATGGGCGTGTCGAAAGACAATAAGGAAT   1006
                     ||||||..|.||.||.|||.|.|||||.||.||.|||||.|..||.||||
RBAM_003190__    957 TCCGAACCTTTTTGCGAAAGTGATGGGGGTTTCCAAAGATACGAAAGAAT   1006

BSNT_00518___   1007 ATTGGAACAGGCTTCATACTCTAGCGGATTATCAGGAAACCGAAATGGTC   1056
                     |||||||.||.||.|||||....||.||.||||||||.||..|.|||.||
RBAM_003190__   1007 ATTGGAATAGACTCCATACCGCCGCAGACTATCAGGAGACACACATGATC   1056

BSNT_00518___   1057 AGAAGCTTTCCATTTACAGAAGAAAT-AAAGTCGAACTATCAATTTCACT   1105
                     .|.||.|||||.|||||.|||||..| |||| |.|||||.||.|.|||||
RBAM_003190__   1057 CGCAGTTTTCCGTTTACGGAAGAGCTGAAAG-CCAACTACCAGTATCACT   1105

BSNT_00518___   1106 ACAGCCACGCACTTGATC-AAGAAGGGAAC-ATTGATCCGGACAAGCTGA   1153
                     ||||.|| |...||||.| ||||| |||.| |||||..||||||.|||||
RBAM_003190__   1106 ACAGTCA-GGTTTTGAACGAAGAA-GGAGCGATTGACGCGGACAGGCTGA   1153

BSNT_00518___   1154 TGGCAAGCAATGTGTGGCAGTACAAACAGCTGCCGGCGGGCGTTCAGACT   1203
                     ....||||||..|.|||||||||||.||.||.|||.|.|||||.||||..
RBAM_003190__   1154 AAAGAAGCAACATCTGGCAGTACAAGCATCTCCCGTCAGGCGTCCAGAAC   1203

BSNT_00518___   1204 GCCATTGCCAAAACGATTTC-GAGAATGTGCAGGCACCCGCGGCTTAAAG   1252
                     |||||.|||||...|||||| || .||||||||..||||..||||.||.|
RBAM_003190__   1204 GCCATCGCCAATGTGATTTCTGA-CATGTGCAGAAACCCAGGGCTGAAGG   1252

BSNT_00518___   1253 CTTTGC------ATCAGGAACAAGTCAAGGATGTTCAAATCTATTTGTTT   1296
                     ||||||      |.||||  ||||    |||||....||||||||||||.
RBAM_003190__   1253 CTTTGCCCGGGGAGCAGG--CAAG----GGATGCCGCAATCTATTTGTTC   1296

BSNT_00518___   1297 AAACAAACAACAAACCTGCCTGCTAATCTGCTGAAATTGATTCAAATGTT   1346
                     ...||..|.||.||||||||.|||...||||||.||||||||||.|.|||
RBAM_003190__   1297 CGCCAGGCGACGAACCTGCCCGCTTCGCTGCTGCAATTGATTCAGACGTT   1346

BSNT_00518___   1347 CGACTATGCGCAAACCGTTCCGAAACTCGTTTTATATCATACGG----AA   1392
                     .||.||.||.||||||||||||||||||||||||||||||||||    ||
RBAM_003190__   1347 TGATTACGCCCAAACCGTTCCGAAACTCGTTTTATATCATACGGAACAAA   1396

BSNT_00518___   1393 ATGAGCGGCGGACTCGCGCGTTCGGATGCTGCCGCCCTGCTGTTCCTGAA   1442
                     ||    ||||.||||...|||||.||.||.|||||.|||.||||..|.||
RBAM_003190__   1397 AT----GGCGAACTCAGACGTTCTGACGCCGCCGCTCTGTTGTTTTTAAA   1442

BSNT_00518___   1443 TGAAATCGGAATCGATATCATCATTTATAATCCGCCCGGACACCAAGATA   1492
                     |.||.||||..|||||||||||.|.|||||||||||.||.||.|||||.|
RBAM_003190__   1443 TAAATTCGGCGTCGATATCATCTTGTATAATCCGCCGGGGCATCAAGACA   1492

BSNT_00518___   1493 TTGAGCAGTTTATTGAAGAGGACCAGTATGATATCCACTGGCTGGATGAC   1542
                     |||||||.|.|||||||||...|||.|.||||.||||.||||||||.|||
RBAM_003190__   1493 TTGAGCATTATATTGAAGAAAGCCAATTTGATGTCCATTGGCTGGAGGAC   1542

BSNT_00518___   1543 ATGGTGTTTCAGCAGGACTACAAAGAGCCTTCGCTTGTGAAAAGGCTCTT   1592
                     |||||.||||.||||||.||.||.|||||.||.||.||.|.||.|||.||
RBAM_003190__   1543 ATGGTATTTCGGCAGGAATATAAGGAGCCGTCACTCGTAAGAAAGCTGTT   1592

BSNT_00518___   1593 CAGAACCATTACCCAAA---------AATAA   1614
                     .|||||||||||.||||         |.|||
RBAM_003190__   1593 TAGAACCATTACGCAAAAGCAGGGAGAGTAA   1623


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