Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00525 and RBAM_003210

See Amino acid alignment / Visit BSNT_00525 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:16
# Commandline: needle
#    -asequence dna-align/BSNT_00525___yceI.1.9828.seq
#    -bsequence dna-align/RBAM_003210___yceI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00525___yceI-RBAM_003210___yceI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00525___yceI-RBAM_003210___yceI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00525___yceI
# 2: RBAM_003210___yceI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1235
# Identity:     916/1235 (74.2%)
# Similarity:   916/1235 (74.2%)
# Gaps:          64/1235 ( 5.2%)
# Score: 3338.5
# 
#
#=======================================

BSNT_00525___      1 ATGGGAAAACAA-CAGCC-TATATCCCAGCGTAAACTGCTGGGCG-TCGC     47
                     |||...|||||| |.||| |...|||  |||.|||||.|| |||| |.||
RBAM_003210__      1 ATGAATAAACAACCTGCCGTCACTCC--GCGAAAACTTCT-GGCGATTGC     47

BSNT_00525___     48 CGGTTTGGGGTGGCTGTTTGATGCAATGGATGTCGGAATATTATCGTTTA     97
                     |||..||||.||||||||||||||.||||||||||||||.||||||||||
RBAM_003210__     48 CGGAATGGGCTGGCTGTTTGATGCGATGGATGTCGGAATTTTATCGTTTA     97

BSNT_00525___     98 TTATCGCCGCGCTCCATGTAGAGTGGAATCTGTCGCCCGAAGAAATGAAA    147
                     |||||||||||||.||....||.||||||.|..|.|||||..||||||||
RBAM_003210__     98 TTATCGCCGCGCTTCACACTGATTGGAATTTAACACCCGATCAAATGAAA    147

BSNT_00525___    148 TGGATCGGAAGCGTCAATTCCATCGGCATGGCTGCGGGTGCGTTTTTGTT    197
                     ||||||||||||||||||||||||||.|||||.|||||.||.|||.|.||
RBAM_003210__    148 TGGATCGGAAGCGTCAATTCCATCGGTATGGCAGCGGGCGCCTTTGTATT    197

BSNT_00525___    198 TGGTTTGCTTGCTGATCGAATCGGCCGCAAAAAAGTGTTCATCATCACCC    247
                     .||..||||.||.||..|.||||||||.|||||||||||.||.|||||.|
RBAM_003210__    198 CGGAATGCTGGCCGACAGGATCGGCCGGAAAAAAGTGTTTATGATCACGC    247

BSNT_00525___    248 TTTTATGCTTTTCCATCGGAAGCGGCATTTCCGCTTTTGTGACGAGCTTA    297
                     |.||||.||||||..|||||||||||||.||||||||.|..|||.|.||.
RBAM_003210__    248 TGTTATTCTTTTCTGTCGGAAGCGGCATATCCGCTTTCGCAACGGGATTG    297

BSNT_00525___    298 TCGGCATTTCTAATCCTTCGTTTCGTGATTGGTATGGGACTTGGCGGCGA    347
                     .|||..|||||.||..|.|||||..||||.||.|||||.||||||||.||
RBAM_003210__    298 ACGGTTTTTCTCATATTGCGTTTTCTGATCGGAATGGGGCTTGGCGGGGA    347

BSNT_00525___    348 GCTTCCAGTCGCTTCAACACTCGTTTCGGAAGCGGTTGTGCCTGAAAAGC    397
                     .||.||.|||||.||.||.|||||.||.||||||...|..||.|||||||
RBAM_003210__    348 ACTGCCTGTCGCCTCGACGCTCGTGTCAGAAGCGTCCGCTCCCGAAAAGC    397

BSNT_00525___    398 GGGG-CAGAGTGATTGTGCTTTTGGAAAGCTTTTGGGCCGTGGGCTGGCT    446
                     |||| |.|| |.||.|||||..|.||.|||||||||||||.|||||||||
RBAM_003210__    398 GGGGACGGA-TCATCGTGCTGCTTGAGAGCTTTTGGGCCGCGGGCTGGCT    446

BSNT_00525___    447 CGCAGCGGCCTTGATTTCTTACTTTGTGATACCAAGCTTCGGCTGGCAGG    496
                     ....|||||..|||||||.||||||||.|||||....|||||||||||||
RBAM_003210__    447 TCTTGCGGCGGTGATTTCCTACTTTGTCATACCGTCATTCGGCTGGCAGG    496

BSNT_00525___    497 CTGCACTTCTGTTAACTGCGCTGACTGCTTTTTATGCGCTGTACCTGCGG    546
                     |.||.||.||.|||||.||||||.|.||.|||||||||||||||.|||||
RBAM_003210__    497 CCGCGCTGCTCTTAACGGCGCTGGCCGCATTTTATGCGCTGTACTTGCGG    546

BSNT_00525___    547 ACGAGTCTGCCTGATT---CGCCGAAATATGAATCGCTTTCTGCC-----    588
                     |..||.||.||.||.|   ||.||.|..|.|.||       ||||     
RBAM_003210__    547 AGAAGCCTTCCGGAATCACCGGCGCACCAGGCAT-------TGCCGCAGA    589

BSNT_00525___    589 -AAAAA------GAGGTCGGTGTGGGAGAATGTAAAAAGCGTCTGGGCAA    631
                      |||||      |.||.|.| |.|||          |||.||||||.|.|
RBAM_003210__    590 AAAAAAGCATACGCGGGCAG-GCGGG----------AAGTGTCTGGACGA    628

BSNT_00525___    632 GACAGTATATACGGCCGACCGTGATGCTGTCGCTCGTTTGGTTCTGTGTG    681
                     .||.||||||.|..|||||.|||.|||||||..|||||||||||||.||.
RBAM_003210__    629 AACCGTATATCCAACCGACGGTGCTGCTGTCTGTCGTTTGGTTCTGCGTC    678

BSNT_00525___    682 GTGTTTTCTTATTACGGCATGTTCCTATGGCTGCCGAGTGTCATGCTGCT    731
                     ||.|||||.||||||||||||||..|||||||||||||.||.||||||.|
RBAM_003210__    679 GTCTTTTCATATTACGGCATGTTTTTATGGCTGCCGAGCGTGATGCTGAT    728

BSNT_00525___    732 GAAAGGCTTCAGCATGATTCAAAGCTTTGAATATGTCCTGCTGATGACGC    781
                     ||||||||.||||||||||.|.|||||.|||||.|||||.||||||||.|
RBAM_003210__    729 GAAAGGCTACAGCATGATTGAGAGCTTCGAATACGTCCTTCTGATGACAC    778

BSNT_00525___    782 TTGCTCAGCTACCGGGCTATTTCTCTGCCGCATGGCTGATTGAAAAAGCG    831
                     ||||.|||||.||.||.|||||||||||.||.||||||||.|||||||||
RBAM_003210__    779 TTGCCCAGCTTCCCGGATATTTCTCTGCGGCGTGGCTGATCGAAAAAGCG    828

BSNT_00525___    832 GGCCGAAAGTGGATACTCGTCATTTACTTGATTGGTACAGCAGGAAGCGC    881
                     ||.||.|||...||..|.|||||.||.|||.|.||.||.||.||.|||||
RBAM_003210__    829 GGGCGGAAGACCATCTTAGTCATCTATTTGCTCGGAACGGCGGGCAGCGC    878

BSNT_00525___    882 CTATTTCTTCGGAACGGCGGATTCCTTAAGTC--TTCTGCTTACGGCTGG    929
                     .|||||||||||..|..|||||||.||  |.|  |.|||||.||.||.||
RBAM_003210__    879 TTATTTCTTCGGTGCCTCGGATTCATT--GGCCATGCTGCTCACAGCGGG    926

BSNT_00525___    930 AATGCTGTTATCGTTTTTCAACCTCGGTGCATGGGGCGTGCTGTATGCGT    979
                     .||||||.|.||.||.|||||.|||||.||||||||||||||.||.||.|
RBAM_003210__    927 CATGCTGCTGTCCTTCTTCAATCTCGGCGCATGGGGCGTGCTTTACGCCT    976

BSNT_00525___    980 ATACCCCGGAGCAATACCCGACTGCGATTCGAGCAACAGGTTCAGGAACG   1029
                     ||||.||||||||.||.||..|.||||||||.||.||.|||||.||.||.
RBAM_003210__    977 ATACACCGGAGCAGTATCCTGCGGCGATTCGTGCGACCGGTTCCGGCACA   1026

BSNT_00525___   1030 ACAGCAGCGTTTGGAAGAATCGGCGGCTTCTTCGGGCCTTTGCTCGTTGG   1079
                     ||.||.|||.|.||.||||||||||||.|.|||||.||..|.||.||.||
RBAM_003210__   1027 ACGGCGGCGGTCGGCAGAATCGGCGGCATTTTCGGTCCGCTTCTTGTCGG   1076

BSNT_00525___   1080 AACGCTCGCAGCCCGTCATTTTTCGTTTTCGGTCATCTTTTCAATCTTTT   1129
                     |.||||.||||||||..|..||||||||.|.||.||.||..|..||||||
RBAM_003210__   1077 ATCGCTTGCAGCCCGGAACGTTTCGTTTACAGTGATTTTCGCCGTCTTTT   1126

BSNT_00525___   1130 GCATTGCAATCTTACTCGCGGTTGCTTGT-------ATTTTGATTATGGG   1172
                     |....||.|||.|      |.|||| .||       |||.|.|||.|.||
RBAM_003210__   1127 GTGCGGCCATCCT------GATTGC-CGTCATCACCATTATTATTCTCGG   1169

BSNT_00525___   1173 GAAAGAAACGAAACAAACTGAGCTAG---AATAG-   1203
                     .||||||||||||||.||.|||||.|   ||| | 
RBAM_003210__   1170 AAAAGAAACGAAACAGACAGAGCTTGCGCAAT-GA   1203


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