Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00530 and RBAM_003240

See Amino acid alignment / Visit BSNT_00530 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:16
# Commandline: needle
#    -asequence dna-align/BSNT_00530___opuAC.1.9828.seq
#    -bsequence dna-align/RBAM_003240___opuAC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00530___opuAC-RBAM_003240___opuAC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00530___opuAC-RBAM_003240___opuAC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00530___opuAC
# 2: RBAM_003240___opuAC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity:     688/890 (77.3%)
# Similarity:   688/890 (77.3%)
# Gaps:          16/890 ( 1.8%)
# Score: 2612.0
# 
#
#=======================================

BSNT_00530___      1 ATGCTTAAAAAAATCATCGGCATCGGCGTTTCCGCCATGCTGGCGCTCTC     50
                     ||||||||.|||||||||||..||||||||.||||...||||||.||.||
RBAM_003240__      1 ATGCTTAAGAAAATCATCGGTGTCGGCGTTACCGCTGCGCTGGCTCTTTC     50

BSNT_00530___     51 ACTTGCGGCTTGCGGTTCAGAAAAC-GAAAAAAATGCATCCGCAGCAGAA     99
                     ..|.||.||.|||||||| |.|.|| ||....||.|||.|.||.||.||.
RBAM_003240__     51 TTTGGCTGCCTGCGGTTC-GCAGACTGATGGTAAGGCAACGGCTGCGGAC     99

BSNT_00530___    100 CAGGTGAATAAGACCATCATCGGGATTGACCCCGGTTCAGGGATTATGTC    149
                     ||||||||.||.|||||.|||||.|||||.||.||.||.|||||.|||.|
RBAM_003240__    100 CAGGTGAACAAAACCATTATCGGTATTGATCCGGGATCGGGGATCATGGC    149

BSNT_00530___    150 CCTGACTGACAAAGCGATGAAGGATTATGACCTGAATGACTGGACATTGA    199
                     ||||||.||..|.||..||||||||||.|...||||.|||||||     |
RBAM_003240__    150 CCTGACGGATGAGGCCGTGAAGGATTACGGGTTGAAAGACTGGA-----A    194

BSNT_00530___    200 TTT-----CTGCGTCAAGTGCTGCGATGACCGCTACGCTTAAAAAGTCAT    244
                     |.|     |.||||||||||||||.|||||.||.||..|.||.||.||||
RBAM_003240__    195 TGTCGTCACGGCGTCAAGTGCTGCCATGACGGCGACATTGAAGAAATCAT    244

BSNT_00530___    245 ACGACCGTAAGAAACCGATTATCATTACAGGATGGACACCGCACTGGATG    294
                     |.|||||.||.||.|||||.|||.|.||.||.|||||.||||||||||||
RBAM_003240__    245 ATGACCGGAAAAAGCCGATCATCGTAACGGGCTGGACGCCGCACTGGATG    294

BSNT_00530___    295 TTCTCTAGATATAAGCTGAAATATCTCGATGATCCGAAACAATCTTATGG    344
                     |||||.|||||.||||||||.|..||.||||||||||||.||.|.||.||
RBAM_003240__    295 TTCTCCAGATACAAGCTGAAGTTCCTTGATGATCCGAAAAAAACGTACGG    344

BSNT_00530___    345 CAGCGCAGAGGAAATCCATACGATCACACGCAAAGGCTTCAGCAAAGAAC    394
                     .|..||.|||.|.||.||||||||.||..|.|..||||||||.||.||||
RBAM_003240__    345 AACTGCCGAGCAGATTCATACGATTACTAGAACCGGCTTCAGTAAGGAAC    394

BSNT_00530___    395 AGCCGAATGCCG-CAAAGCTTCTGAGCCAGTTTAAATGGACGCAAGACGA    443
                     ||||.||.||.| ||||| ||||.||||||||.|||||||||||.|||||
RBAM_003240__    395 AGCCTAACGCGGCCAAAG-TTCTCAGCCAGTTCAAATGGACGCAGGACGA    443

BSNT_00530___    444 AATGGGCGAAATCATGATCAAGGTGGAGGAAGGCGAGAAACCTGCCAAAG    493
                     .|||||.|||.|||||||....||.|||||||||||.||.||.|||||||
RBAM_003240__    444 TATGGGAGAAGTCATGATTGCCGTTGAGGAAGGCGAAAAGCCGGCCAAAG    493

BSNT_00530___    494 TTGCTGCCGAGTACGTCAATAAACACAAGGATCAGATTGCCGAATGGACA    543
                     ..||.||.||.||.||.||.||||||||.||.||..|.||..||||||||
RBAM_003240__    494 CCGCAGCTGAATATGTGAAAAAACACAAAGACCAAGTGGCTCAATGGACA    543

BSNT_00530___    544 AAAGGCGTTCA-AAAGGTAAAGGGAGACAAAATCAACCTTGCCTATGTGG    592
                     |||||||..|| ||||..|||||| ||.|||||.|||||.||.|||||||
RBAM_003240__    544 AAAGGCGCCCATAAAGTCAAAGGG-GATAAAATTAACCTGGCTTATGTGG    592

BSNT_00530___    593 CGTGGGACAGTGAGATTGCAAGTACAAACGTCATAGGCAAAGTCTTAGAA    642
                     |.|||||||||||.||.||||||||.||.||.||.||.|||||.||..||
RBAM_003240__    593 CATGGGACAGTGAAATCGCAAGTACGAATGTAATCGGAAAAGTATTTCAA    642

BSNT_00530___    643 GACTTGGGCTATGAGGTAACACTTACTCAGGTAGAGGCTGGGCCGATGTG    692
                     |||.|.||||||||.||.|..||.||.||.||.|||||.||.||||||||
RBAM_003240__    643 GACCTCGGCTATGACGTGAAGCTGACGCAAGTGGAGGCGGGACCGATGTG    692

BSNT_00530___    693 GACTGCAATTGCGACGGGAAGTGCGGATGCATCCCTTTCCGCATGGCTGC    742
                     ||||||.||||||||.||.||.||||||||.||..|.||.||.|||||.|
RBAM_003240__    693 GACTGCGATTGCGACAGGCAGCGCGGATGCGTCATTGTCTGCTTGGCTTC    742

BSNT_00530___    743 CGAATACCCATAAAGCATACGCCGCTAAATATAAAGGCAAATATGATGAT    792
                     |||||||||||||.|||||.||..||||||||||||||||||||||.|||
RBAM_003240__    743 CGAATACCCATAAGGCATATGCGTCTAAATATAAAGGCAAATATGAAGAT    792

BSNT_00530___    793 ATTGGCACAAGTATGACGGGTGTGAAGATGGGGCTTGTTGTTCCTCAATA    842
                     .|.||.||.|||.||||.||.||.||||||||.||.||.||||||||.||
RBAM_003240__    793 GTAGGAACGAGTCTGACAGGCGTCAAGATGGGTCTGGTCGTTCCTCAGTA    842

BSNT_00530___    843 TATGAAAAATGTCAACTCAATTGAAGATTTGAAGAAGTAA    882
                     |||||||||.|||||.||||||||||||||||||||.|||
RBAM_003240__    843 TATGAAAAACGTCAATTCAATTGAAGATTTGAAGAAATAA    882


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