Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00556 and RBAM_003380

See Amino acid alignment / Visit BSNT_00556 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:18
# Commandline: needle
#    -asequence dna-align/BSNT_00556___tmrB.1.9828.seq
#    -bsequence dna-align/RBAM_003380___tmrB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00556___tmrB-RBAM_003380___tmrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00556___tmrB-RBAM_003380___tmrB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00556___tmrB
# 2: RBAM_003380___tmrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 612
# Identity:     468/612 (76.5%)
# Similarity:   468/612 (76.5%)
# Gaps:          33/612 ( 5.4%)
# Score: 1814.5
# 
#
#=======================================

BSNT_00556___      1 ---ATGATCATTTGGATAAACGGGGCATTCGGTTCGGGAAAAACACAAAC     47
                        |||||||||||||||||.|||||.||||||||.||||||||||||||
RBAM_003380__      1 ATGATGATCATTTGGATAAATGGGGCTTTCGGTTCCGGAAAAACACAAAC     50

BSNT_00556___     48 AGCCTTCGAACTGCACAGAAGGCTGAGCCCATCTTACGTGTATGATCCCG     97
                     |||.||.||||||||||||||.||||..||.||||||||.||||||||.|
RBAM_003380__     51 AGCGTTTGAACTGCACAGAAGACTGAAACCGTCTTACGTATATGATCCTG    100

BSNT_00556___     98 AGAAAATGGGTTTTGCGCTGCGCTCCATGGTGCCGCAGGAGATCGCAAAG    147
                     |.||.|||||.||||||.||||.||.|||.|.||||..||.|||||..|.
RBAM_003380__    101 AAAAGATGGGGTTTGCGATGCGTTCGATGATACCGCCCGATATCGCTGAA    150

BSNT_00556___    148 GACGATTTTCAAAGCTATCCTTTATGGCGGGCGTTCAATTACAGTTTGCT    197
                     ||.||.|||||||||||.|||.|.|||||||..|||||||||||..||||
RBAM_003380__    151 GATGACTTTCAAAGCTACCCTCTGTGGCGGGAATTCAATTACAGCATGCT    200

BSNT_00556___    198 AGCTTCTCTGACAGATACATACCGCGGCATCCTTATTGTGCCTATGACGA    247
                     ..|.|.|.||.||||||||||.|..||||||.|.||||||||.|||||.|
RBAM_003380__    201 TTCCTATTTGTCAGATACATATCAGGGCATCATCATTGTGCCCATGACCA    250

BSNT_00556___    248 TTGTAC--ACCCTGAATACTTCAATGAGATCATCGGCAGGCTCAGACAGG    295
                     |  |||  ||..|.||||||||.||||.||.|||.|||||||.|||||||
RBAM_003380__    251 T--TACGAACGATCAATACTTCCATGACATTATCAGCAGGCTGAGACAGG    298

BSNT_00556___    296 AAGGCAGGATCGTTCACCACTTTACACTAATGGCTTCAAAGGAAACCTTG    345
                     |.|||.|||.|.|||||||||||||.||..||||||||||||||||.|||
RBAM_003380__    299 ATGGCCGGACCATTCACCACTTTACCCTGCTGGCTTCAAAGGAAACATTG    348

BSNT_00556___    346 TTAAAAAGGCTGCGCACCAGAGCAGAAGGAAAAAACTCATGGGCCGCCAA    395
                     .|.|||.|.||||||||||||||.||||||||||||||.||||||||.||
RBAM_003380__    349 CTGAAACGCCTGCGCACCAGAGCGGAAGGAAAAAACTCCTGGGCCGCAAA    398

BSNT_00556___    396 ACAAATTGACCGCTGTGTTGAAGGATTATCATCACCCATTTTTGA-----    440
                     ||||||.||||||||           .||||.||.|| |.|.|||     
RBAM_003380__    399 ACAAATCGACCGCTG-----------CATCAACAGCC-TGTCTGATAGCC    436

BSNT_00556___    441 -------GGACCACATTCAAACAGACAACCTGTCGATTCAGGATGTGGCA    483
                            .||.||..|.||.||||||.|..||||.||||||.|.||.|||
RBAM_003380__    437 TCTTCACAGAACATCTCCATACAGACCAAATGTCTATTCAGCAGGTCGCA    486

BSNT_00556___    484 GAGAAC-ATTGCCGCGAGAGCCGAACTCCCATTAGATCCTGATACAAGAG    532
                     || ||| ||.||.||...|||..|.||.||..|.||.||||||.|.||||
RBAM_003380__    487 GA-AACGATCGCTGCCCAAGCAAATCTGCCTCTTGAGCCTGATTCGAGAG    535

BSNT_00556___    533 GCAGCCTCCGAAGGTTCGCCGACAGATTAATGGTAAAGCTGAATCATATC    582
                     |.|||||.|||||.|||.||||||||||.|||||.|||||||||||||||
RBAM_003380__    536 GAAGCCTTCGAAGATTCACCGACAGATTGATGGTGAAGCTGAATCATATC    585

BSNT_00556___    583 CGCATCAAATAA    594
                     ||.|||||||||
RBAM_003380__    586 CGTATCAAATAA    597


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