Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00440 and RBAM_003400

See Amino acid alignment / Visit BSNT_00440 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:12
# Commandline: needle
#    -asequence dna-align/BSNT_00440___ycbE.1.9828.seq
#    -bsequence dna-align/RBAM_003400___ycbE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00440___ycbE-RBAM_003400___ycbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00440___ycbE-RBAM_003400___ycbE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00440___ycbE
# 2: RBAM_003400___ycbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity:     823/1557 (52.9%)
# Similarity:   823/1557 (52.9%)
# Gaps:         435/1557 (27.9%)
# Score: 1778.5
# 
#
#=======================================

BSNT_00440___      1 ATGAAAAAAGA---------------CTTTGCGAATGTTACA---CCGGC     32
                     .||||||||||               |||           ||   |||.|
RBAM_003400__      1 TTGAAAAAAGAAACGGAGCTGAGGGCCTT-----------CAGTCCCGTC     39

BSNT_00440___     33 GGGCAAAAAAACG--TCCGTGCGCTGGT----TCATCGTGTTTATGCTGT     76
                      .||||.|||.||  ||   |||||.||    |.||..||.||.|..|||
RBAM_003400__     40 -CGCAATAAACCGACTC---GCGCTCGTTATGTGATATTGGTTCTTTTGT     85

BSNT_00440___     77 TTCTTGTGACCTCTATTAACTACGCGGATCGAGCGACGCTTTCCATCACC    126
                     ||.||.|.||..|.|||||.||....||.|||||.|...|.||.||...|
RBAM_003400__     86 TTTTTATCACTGCGATTAATTATATAGACCGAGCCAGTGTATCTATTGTC    135

BSNT_00440___    127 GGAGATTCCGTCCAGCACGATTTGG--GA---TTGGACTCGGTCGCCATG    171
                     ||....|||.|.||.||    ||.|  ||   |..|.|.||  |||..|.
RBAM_003400__    136 GGCCCATCCATTCAACA----TTCGCTGAACCTAAGCCCCG--CGCTTTT    179

BSNT_00440___    172 GGATAT-GTCTTTTCTGCCTTTGGCTGGGCCTAT---GTCATCGGA--CA    215
                     ||..|| ||.||||||||.||..|||||.|||||   |     |||  ||
RBAM_003400__    180 GGGCATCGTTTTTTCTGCGTTCAGCTGGACCTATACGG-----GGATGCA    224

BSNT_00440___    216 GCTTCCGGGCGGCTGGCTGC----TGGACCGTTTTGGTTCAAA---GACT    258
                     |.||||.||||   |||| |    ||||....||.||.|||||   ||| 
RBAM_003400__    225 GATTCCAGGCG---GGCT-CATTTTGGATAAATTCGGGTCAAAACGGAC-    269

BSNT_00440___    259 AT----CATTGCGTTAAGCATCTTTTTCTGGTCGTTTTTTAC--------    296
                     ||    .|||.|.|||      |||.|.||||||.|||||||        
RBAM_003400__    270 ATACGGAATTTCTTTA------TTTGTGTGGTCGGTTTTTACCGGAGTAC    313

BSNT_00440___    297 --GC---TGCTGCAAGGGGCGATT--GGCTTTTTCTCCGCCGGCACAGCG    339
                       ||   |||..||||      ||  ||.|||.|.|.||.|.||    ||
RBAM_003400__    314 AAGCTTTTGCGACAAG------TTTCGGGTTTCTATTCGGCTGC----CG    353

BSNT_00440___    340 ATTATCCTGCTGTTTGCACTGCGTTTTCTGGTTGGTTTATCAGAAGCGCC    389
                          ||||||     ||             |.||..||.|.|||.||||
RBAM_003400__    354 -----CCTGCT-----CA-------------TCGGCATAGCTGAATCGCC    380

BSNT_00440___    390 TTCATTTCCCGGAAACGGCAGAGTTGTTGCCTCATGGTTTCCAAGCTCCG    439
                     ..|.|||||.|.||||..|.|..||||..|..|||||||||||||     
RBAM_003400__    381 GGCGTTTCCGGCAAACAACCGGATTGTCACGACATGGTTTCCAAG-----    425

BSNT_00440___    440 AGCGCGGGACAGCTTCAGCCTTT----------TTTAATTCAGCACAATA    479
                        ||||||..||    ||||||          |||           |||
RBAM_003400__    426 ---GCGGGAACGC----GCCTTTGCGACGGGTGTTT-----------ATA    457

BSNT_00440___    480 CTTC---GCAAT-CGTCATTTTTTCTCCTTTAATGGGCTGGC-TTACCCA    524
                     |..|   |.||| .|||                 |||||||| ||..|||
RBAM_003400__    458 CGGCGGGGGAATATGTC-----------------GGGCTGGCGTTTGCCA    490

BSNT_00440___    525 C-----------TCT--------------TTCGGCTGGCATTCCGTCTTC    549
                     |           |||              ||.|.|||||...||||.||.
RBAM_003400__    491 CACCGGTTTTATTCTGGGTGTTAACGGCATTTGACTGGCGCGCCGTATTT    540

BSNT_00440___    550 GTT---------GTTATGGGTATTGCGGGCATTCTTCTGGCTGTCATCTG    590
                     .||         ||..|.||.||||       |.||||  |.||..||||
RBAM_003400__    541 ATTTCCTCAGGAGTGCTCGGAATTG-------TTTTCT--CCGTTTTCTG    581

BSNT_00440___    591 GCTAAAAACGGTGT---ACGAACCGAAAAAAC----ACCCAAAGGTTAAT    633
                     |.|.||||   |||   ||||.|||    |||    |.|..||.||.|||
RBAM_003400__    582 GTTTAAAA---TGTATCACGAGCCG----AACGGGTATCGGAAAGTGAAT    624

BSNT_00440___    634 GAAGCTGAGCTTGCGTACATCGAACAGGGCGGCGGACTGATTTCCATGGA    683
                     ...|..|||||||..||.||..||.|.|||||||||||||.|      ||
RBAM_003400__    625 CGTGAGGAGCTTGATTATATTAAAGAAGGCGGCGGACTGACT------GA    668

BSNT_00440___    684 --TGACAGTAAAAGCAAACAAGAGACAG--AATCGAAATGGCCGTATATC    729
                       ||.|.|   |.|||..|    |.|||  .||||   |||.||.||.||
RBAM_003400__    669 GGTGTCTG---ATGCAGCC----GGCAGGATATCG---TGGGCGGATTTC    708

BSNT_00440___    730 AAACAGCTGTTAACGAACCGCATGCTGATTGGTGTGTACATCGCGCAAT-    778
                     ...|||||..|||...||||||.|||..|.||..||||.||||..|||| 
RBAM_003400__    709 GTCCAGCTTCTAAAATACCGCAAGCTTGTCGGATTGTATATCGGCCAATT    758

BSNT_00440___    779 -ACTGTATTACGACTCTCAC-CTAT--TTCTTTCTCACATGGTTTCCGGT    824
                      .|.|||    |.||| ||| ||.|  ||||||.|.||||||||||||..
RBAM_003400__    759 CGCCGTA----GCCTC-CACGCTGTTCTTCTTTTTGACATGGTTTCCGAC    803

BSNT_00440___    825 ATATTTGGTTCAGGC-CCGCGGCATGTCTATTCTT-GAAGCTGGGTTTGT    872
                     .|||.|||...|||| ..|| .||||.|| ||||| .|||..||.||.|.
RBAM_003400__    804 TTATCTGGCGGAGGCAAAGC-ACATGGCT-TTCTTAAAAGTCGGCTTCGC    851

BSNT_00440___    873 CGCTTCCCTGCCG----GCGCTGTGCGGATTTGCCGGCGGCGTGCTTGGG    918
                     |||.||..|.|||    .|||    ||..|||..|||||...|| ||.||
RBAM_003400__    852 CGCATCAATCCCGTATATCGC----CGCTTTTTTCGGCGTATTG-TTCGG    896

BSNT_00440___    919 GGCATTGT-GTCAGACATCTTGCTCAAAAAAGGCCGT-TCACTGACCTTT    966
                     .|.|||.| |||.|||..|.||.| .|||..||..|| ||..|||.|.||
RBAM_003400__    897 CGGATTTTGGTCTGACGGCATGAT-GAAACGGGGGGTGTCGGTGAACGTT    945

BSNT_00440___    967 GCAAGAAAAGTGCCAATCATTGCCGGCATGCTGCTGTCTTGCAGTATGAT   1016
                     ||..|.|||..|||..||||...|||..|.||||||              
RBAM_003400__    946 GCCCGGAAAACGCCCGTCATCCTCGGTCTTCTGCTG--------------    981

BSNT_00440___   1017 TGTCTGCAACTACACAGATTCAGCAT--GGCTCGTC----GTTATC--AT   1058
                                  ||||..||  |||  .||||| |    |||| |  ||
RBAM_003400__    982 -------------ACAGGCTC--CATCGTGCTCG-CGAATGTTA-CGGAT   1014

BSNT_00440___   1059 TATGTCGCTCGCGTTTTTCGGA----------AAAGGCTTC---GGCGCA   1095
                     |.|| |.|.||||.||||  ||          .|..|||||   .|||||
RBAM_003400__   1015 TCTG-CTCCCGCGGTTTT--GACGATCTTATCCATTGCTTCTTTTGCGCA   1061

BSNT_00440___   1096 CTGGGCTGGGC-TGT----CGTGTC--GGAC-----------ACGTCTC-   1126
                            |||| |||    |.|.||  ||||           |.|||.| 
RBAM_003400__   1062 -------GGGCATGTCCAACATATCCTGGACGATGCTGAGTGAGGTCGCG   1104

BSNT_00440___   1127 -----CGAAAGAATGTGCAGGATT---AAGCGGCGGTTTGTTCAACACTT   1168
                          |||||.|||    .|||||   |.|.||||   |.||.|.|..||
RBAM_003400__   1105 CCAAGCGAAACAAT----CGGATTGGCAGGGGGCG---TCTTTAGCTTTT   1147

BSNT_00440___   1169 TCGGCAATATTGCCTCGATTACAACACCGATTATTATCGGATACATTGTT   1218
                     |||.||||||.|||...||||..||.|||.||||.|||||.|..||.|||
RBAM_003400__   1148 TCGCCAATATGGCCGGTATTATCACCCCGCTTATCATCGGGTTTATCGTT   1197

BSNT_00440___   1219 AATGCCACTGGATCTTTTAATGGCGCGCTTGTGTTTGTCGGCGCTAACGC   1268
                     ..|||.||.||.||||.|||.||.|||.||.||||||||||||||..|||
RBAM_003400__   1198 TCTGCGACCGGTTCTTATAACGGAGCGATTCTGTTTGTCGGCGCTGTCGC   1247

BSNT_00440___   1269 GATT----GCGGCGA---TCCTAAGCTATTTGCTGCTGGTCGGGCCGATC   1311
                      |||    |.||| |   ||.||   |||||  |..|.|||||       
RBAM_003400__   1248 -ATTTATCGGGGC-ATTTTCTTA---TATTT--TCATTGTCGG-------   1283

BSNT_00440___   1312 AAACGGGTCGTGTTAAAGAAACAAGAACAAGACCCCGATCAATCGTTGCC   1361
                     |||  |||.|    ||.|.|..|||       |.|||||..         
RBAM_003400__   1284 AAA--GGTGG----AACGCATTAAG-------CTCCGATAG---------   1311

BSNT_00440___   1362 TGTCTAA   1368
                            
RBAM_003400__   1311 -------   1311


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