Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00581 and RBAM_003510
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:19
# Commandline: needle
# -asequence dna-align/BSNT_00581___nasD.1.9828.seq
# -bsequence dna-align/RBAM_003510___nasD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00581___nasD-RBAM_003510___nasD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00581___nasD-RBAM_003510___nasD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00581___nasD
# 2: RBAM_003510___nasD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2421
# Identity: 2169/2421 (89.6%)
# Similarity: 2169/2421 (89.6%)
# Gaps: 6/2421 ( 0.2%)
# Score: 9801.0
#
#
#=======================================
BSNT_00581___ 1 ATGGGAAAAAAACAGCTAGTTCTTGTTGGTAATGGAATGGCCGGGGTAAG 50
||||||||||||||||||||.||||||||.||||||||||||||||||||
RBAM_003510__ 1 ATGGGAAAAAAACAGCTAGTCCTTGTTGGAAATGGAATGGCCGGGGTAAG 50
BSNT_00581___ 51 GGCCATTGAAGAGATACTGAGTGTTGCTAAAGACGAGTTTCAGATCACAA 100
.||.||||||||.||||||.|||||.|.||||||||.||..||||.||||
RBAM_003510__ 51 AGCGATTGAAGAAATACTGCGTGTTTCAAAAGACGAATTCGAGATTACAA 100
BSNT_00581___ 101 TTTTCGGAGCCGAACCGCATCCCAATTACAACCGAATCCTTTTGTCAAAA 150
|.|||||.||||||||.||||||||.||.||||||||||||.||||||||
RBAM_003510__ 101 TATTCGGGGCCGAACCTCATCCCAACTATAACCGAATCCTTCTGTCAAAA 150
BSNT_00581___ 151 GTGCTTCAAGGCGATACAGATATTAAAGATATTACGTTAAACGATTGGGA 200
|||||.|||||||||||.||.|||.||||.||||||||||||||||||.|
RBAM_003510__ 151 GTGCTGCAAGGCGATACCGACATTCAAGACATTACGTTAAACGATTGGAA 200
BSNT_00581___ 201 CTGGTACGAAGAAAACAACATTCAATTGTATACAAATGAAACAGTCATCA 250
|||||||.||||||||||||||||..|||||||...||||||||||||||
RBAM_003510__ 201 CTGGTACAAAGAAAACAACATTCAGCTGTATACCGGTGAAACAGTCATCA 250
BSNT_00581___ 251 AAGTGGACACGGAAAACAAAACAGTCATCACAGATGCAGACAGAATCCAG 300
||||.|||||||||||||||||.||||||||.||||||||||||||||||
RBAM_003510__ 251 AAGTCGACACGGAAAACAAAACCGTCATCACCGATGCAGACAGAATCCAG 300
BSNT_00581___ 301 CCTTACGACGAATTGATCCTGGCGACAGGCTCGCTCCCTTTTATCCTTCC 350
||||||||.|||.|.|||||||||||||||||..||||||||||||||||
RBAM_003510__ 301 CCTTACGATGAACTCATCCTGGCGACAGGCTCTGTCCCTTTTATCCTTCC 350
BSNT_00581___ 351 GATTCCGGGCGCAGACAAAAAAGGCGTCACAGCTTTCCGGGACATAAAAG 400
|||||||||||||||||||.||||||||||.|||||||||||.|||||||
RBAM_003510__ 351 GATTCCGGGCGCAGACAAACAAGGCGTCACGGCTTTCCGGGATATAAAAG 400
BSNT_00581___ 401 ATACAGACACAATGCTCACCGCGTCAAAACAATATAAAAAAGCAGCCGTC 450
||||||||||.||||||.||||||||||||||||||||||||||||||||
RBAM_003510__ 401 ATACAGACACGATGCTCGCCGCGTCAAAACAATATAAAAAAGCAGCCGTC 450
BSNT_00581___ 451 ATCGGCGGAGGACTTCTTGGTTTGGAAGCCGCTCGCGGACTGCTGAATCT 500
||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_003510__ 451 ATCGGCGGAGGACTGCTTGGTTTGGAAGCCGCTCGCGGACTGCTGAATCT 500
BSNT_00581___ 501 TGGCATGGACGTGTCCGTCATCCACCTCGCCCCATTCCTGATGGAGCGCC 550
.||.|||||||||||.||||||||||||||||||||||||||||||||||
RBAM_003510__ 501 CGGAATGGACGTGTCTGTCATCCACCTCGCCCCATTCCTGATGGAGCGCC 550
BSNT_00581___ 551 AGCTTGATGCAACGGCAGGACGCCTGCTGCAAAACGAGTTAGAAAAACAA 600
|||||||.|||.||||.||||||||||||||||||||.||||||||||||
RBAM_003510__ 551 AGCTTGACGCAGCGGCGGGACGCCTGCTGCAAAACGAATTAGAAAAACAA 600
BSNT_00581___ 601 GGTATGACCTTTTTACTTGAAAAGCAAACCGAAGAAATTGTTGGTGAC-G 649
||.|||||||||||.||||||||||||||||||||||||.|.||| || |
RBAM_003510__ 601 GGCATGACCTTTTTCCTTGAAAAGCAAACCGAAGAAATTCTCGGT-ACTG 649
BSNT_00581___ 650 ATCGTGTCGAAGGCCTCCGTTTCAAGGATGGCACAAGCATTGAAGCTGAT 699
|.|||||||||||..|.||.|||||.||.|||||||||||.||||||||.
RBAM_003510__ 650 ACCGTGTCGAAGGGGTACGCTTCAAAGACGGCACAAGCATCGAAGCTGAC 699
BSNT_00581___ 700 TTAGTGGTCATGGCTGTCGGCATCCGCCCAAATACAACGCTCGGGGCCGA 749
.|.||.||||||||.||||||||||||||.||||||..|||.||..|.||
RBAM_003510__ 700 CTGGTCGTCATGGCGGTCGGCATCCGCCCGAATACACAGCTTGGCACAGA 749
BSNT_00581___ 750 GAGCGGCATTCCGGTTAACCGCGGCATCATCGTCAATGATTATATGCAGA 799
.||||||||||||||.||||||||.|||||.|||||.|||||||||||||
RBAM_003510__ 750 AAGCGGCATTCCGGTAAACCGCGGAATCATTGTCAACGATTATATGCAGA 799
BSNT_00581___ 800 CTGAAATCCCGCACATTTACGCGGTCGGCGAATGTGCCGAGCACCGAGGA 849
||||.||.||||||||||||||||||||.|||||||||||||||||.|||
RBAM_003510__ 800 CTGACATTCCGCACATTTACGCGGTCGGTGAATGTGCCGAGCACCGCGGA 849
BSNT_00581___ 850 ATCGCCTACGGGCTTGTGGCGCCGCTCTATGAACAGGCAAAAGTGCTGGC 899
|||||.|||||.||||||||||||||||||||||||||||||||||||||
RBAM_003510__ 850 ATCGCATACGGTCTTGTGGCGCCGCTCTATGAACAGGCAAAAGTGCTGGC 899
BSNT_00581___ 900 GAAGCATATTTGCGGCATCGAAACAAACCCGTATGAGGGCTCCGTTCTCT 949
.||.|||.||||||||||.||||||||.||||||||.|||||||||||||
RBAM_003510__ 900 CAAACATCTTTGCGGCATTGAAACAAAACCGTATGAAGGCTCCGTTCTCT 949
BSNT_00581___ 950 CCACACAGTTAAAGGTATCGGGCGTCGAGGTTTTCTCTGCCGGGGACTTT 999
||||.||.|||||||||||.||||||||.||.|||||||||||.||||||
RBAM_003510__ 950 CCACTCAATTAAAGGTATCAGGCGTCGAAGTCTTCTCTGCCGGTGACTTT 999
BSNT_00581___ 1000 GATGAATCAGAGGACAAAAAAGCGATTAAAGTCTTCGATGAGCAGGACGG 1049
.|.|||||||||||||||||||||||||||||.|||||||||||||||||
RBAM_003510__ 1000 AACGAATCAGAGGACAAAAAAGCGATTAAAGTGTTCGATGAGCAGGACGG 1049
BSNT_00581___ 1050 CATCTATAAAAAAATTGTCCTGAGAGACAACAAAATTGTCGGTGCTGTTT 1099
|||.|||||||||||.||||||||.|.|||..||||||||||.|||||||
RBAM_003510__ 1050 CATTTATAAAAAAATCGTCCTGAGGGGCAATCAAATTGTCGGCGCTGTTT 1099
BSNT_00581___ 1100 TATTCGGTGACAGCAGCGAAGGCAATCGCCTGTTTTCTATGATTCAAAAA 1149
|.|||||.|||||||||||.||||..|||||||||||.||||||||||||
RBAM_003510__ 1100 TGTTCGGAGACAGCAGCGAGGGCAGCCGCCTGTTTTCAATGATTCAAAAA 1149
BSNT_00581___ 1150 GAAGCCGATATCTCTGAAACCTCTAAAATATCAATCTTACAGCCTCTCAA 1199
|||||||||||||||||||||||.|||||||||||||||||||||||..|
RBAM_003510__ 1150 GAAGCCGATATCTCTGAAACCTCCAAAATATCAATCTTACAGCCTCTTGA 1199
BSNT_00581___ 1200 CCAAGAAGCAGGCACAAGCATCACCGCAGCGATGAGCGACGATGAAATCA 1249
.||.|||||||||.|||||||.|||||.||||||||||||||||||||||
RBAM_003510__ 1200 TCAGGAAGCAGGCGCAAGCATGACCGCGGCGATGAGCGACGATGAAATCA 1249
BSNT_00581___ 1250 TCTGCGGCTGTAACGGCGTGTCAAAAGGTGCGATTATTCAAGCCATACAG 1299
|||||||.||.||||||||.||||||||.|||||||||||||||||.|||
RBAM_003510__ 1250 TCTGCGGATGCAACGGCGTATCAAAAGGCGCGATTATTCAAGCCATTCAG 1299
BSNT_00581___ 1300 GAAAAGGGCTGCTCGTCAACGGACGAGATCAAAGCATGCACTGGCGCATC 1349
|||||.||||||.|.||.||||||||.||||||||||||||.||.|||||
RBAM_003510__ 1300 GAAAAAGGCTGCACATCTACGGACGAAATCAAAGCATGCACCGGGGCATC 1349
BSNT_00581___ 1350 CCGCTCATGCGGAGGCTGTAAGCCACTCGTAGAAGAAATCCTCCAGCATA 1399
|||.||.||||||||||||||.||.|||||.|||||.||.||.||..|||
RBAM_003510__ 1350 CCGTTCCTGCGGAGGCTGTAAACCGCTCGTGGAAGACATTCTTCAATATA 1399
BSNT_00581___ 1400 CGCTCGGATCAGACTTTGATGCGTCAGCGCAAAAAGAAGCCATTTGCGGC 1449
|.||.||.|||||.|||||.|||||.||||||||||||||.|||||||||
RBAM_003510__ 1400 CACTGGGCTCAGAATTTGACGCGTCCGCGCAAAAAGAAGCGATTTGCGGC 1449
BSNT_00581___ 1450 TGCACCACATTGTCAAGAGATGAAGTCGTAGAAGAAATCAAAGCCAAAGG 1499
|||||..||.||||.|||||||||||||||||||||||||||||||||||
RBAM_003510__ 1450 TGCACATCACTGTCGAGAGATGAAGTCGTAGAAGAAATCAAAGCCAAAGG 1499
BSNT_00581___ 1500 GCTGTCACATACAAGAGAAGTCATGAATGTGCTCGGCTGGAAAACGCCAG 1549
||||||.||||||||||||.|||||||.||||||||||||||||||||.|
RBAM_003510__ 1500 GCTGTCCCATACAAGAGAAATCATGAACGTGCTCGGCTGGAAAACGCCGG 1549
BSNT_00581___ 1550 AAGGCTGTTCCAAATGCCGGCCGGCTCTGAACTACTACTTAGGCATGATC 1599
|.|||||.|||||||||||.||.||.||.||||||||||||||||||||.
RBAM_003510__ 1550 AGGGCTGCTCCAAATGCCGTCCTGCCCTCAACTACTACTTAGGCATGATT 1599
BSNT_00581___ 1600 AATCCAACCAAATACGAGGATGACCGGACATCCCGCTTTGTTAATGAACG 1649
|||||..|.|.|||||||||||||.|.||||||||.|||||.||.|||||
RBAM_003510__ 1600 AATCCGGCTACATACGAGGATGACAGAACATCCCGTTTTGTGAACGAACG 1649
BSNT_00581___ 1650 AATGCACGCCAATATTCAAAAAGACGGAACATACTCAGTCGTTCCTCGGA 1699
.||||||||||||||||||||||||||||||||||||||||||||.||||
RBAM_003510__ 1650 GATGCACGCCAATATTCAAAAAGACGGAACATACTCAGTCGTTCCCCGGA 1699
BSNT_00581___ 1700 TGTACGGCGGCGTGACCAACTC-CACAGATTTGCGCAAGATCGCCGATGT 1748
|||||||||||||||||||||| || .|||.|.|||||||||||||||||
RBAM_003510__ 1700 TGTACGGCGGCGTGACCAACTCTCA-GGATCTCCGCAAGATCGCCGATGT 1748
BSNT_00581___ 1749 CGTTGACAAATATGAGATCCCGCTCGTGAAAATGACAGGCGGCCAGCGAA 1798
|||.|||||||||||||||||||||||.||||||||||||||||||||||
RBAM_003510__ 1749 CGTCGACAAATATGAGATCCCGCTCGTTAAAATGACAGGCGGCCAGCGAA 1798
BSNT_00581___ 1799 TTGATCTTATCGGCGTGAAAAAAGAAGACCTTCCGAAGGTATGGGAAGAT 1848
|||||||.||||||||.|||||||||||.||.|||||.|||||||..||.
RBAM_003510__ 1799 TTGATCTCATCGGCGTCAAAAAAGAAGATCTGCCGAAAGTATGGGCCGAG 1848
BSNT_00581___ 1849 CTTGATATGCCGTCGGGCTACGCATACGGAAAAACGCTCCGCACAGTGAA 1898
||||||||||||||.||||||||.|||||||||||.||||||||.||.||
RBAM_003510__ 1849 CTTGATATGCCGTCAGGCTACGCGTACGGAAAAACACTCCGCACGGTAAA 1898
BSNT_00581___ 1899 AACATGTGTAGGCGAGCAATTCTGCCGCTTCGGCACACAAGACTCCATGG 1948
|||.||.||||||||.||||||||||||||||||||.|||||||||||||
RBAM_003510__ 1899 AACGTGCGTAGGCGAACAATTCTGCCGCTTCGGCACGCAAGACTCCATGG 1948
BSNT_00581___ 1949 CACTGGGCATTGCGCTTGAGAAAAAATTCGAAGGGCTAAACACGCCGCAC 1998
|||||||||||||||||||||||||||||||||||||.||.|||||.||.
RBAM_003510__ 1949 CACTGGGCATTGCGCTTGAGAAAAAATTCGAAGGGCTCAATACGCCTCAT 1998
BSNT_00581___ 1999 AAAGTCAAAATGGCCGTGTCTGCATGCCCGCGAAACTGTGCGGAATCCGG 2048
||.|||||||||||||||||.||.||||||||.||||||||||||||.||
RBAM_003510__ 1999 AAGGTCAAAATGGCCGTGTCCGCCTGCCCGCGGAACTGTGCGGAATCAGG 2048
BSNT_00581___ 2049 CATTAAGGACCTTGGCGTTGTCGGCATCGACGGAGGCTGGGAGCTTTATG 2098
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_003510__ 2049 CATTAAGGACCTTGGCGTTGTCGGCATCGACGGAGGCTGGGAGCTTTATG 2098
BSNT_00581___ 2099 TCGGCGGAAACGGCGGAACCCACTTGCGTGCCGGCGATTTGCTGATGAAG 2148
||||||||||||||||||||||.|||||.|||||.||||||||||||||.
RBAM_003510__ 2099 TCGGCGGAAACGGCGGAACCCATTTGCGCGCCGGTGATTTGCTGATGAAA 2148
BSNT_00581___ 2149 GTGAAAACAAATGAAGAAGTCTTAGAATACGCAGGCGCTTACCTGCAATA 2198
||.|||||.||||||||||||||||||||.||.||.||||||||.||.||
RBAM_003510__ 2149 GTAAAAACGAATGAAGAAGTCTTAGAATATGCGGGGGCTTACCTTCAGTA 2198
BSNT_00581___ 2199 TTACAGGGAAACCGCAAACTATCTGGAGCGTACGTCCGCATGGCTTGAGC 2248
.|||||.|||||.|||||||||||||||||.||.||||||||||||||||
RBAM_003510__ 2199 CTACAGAGAAACGGCAAACTATCTGGAGCGGACATCCGCATGGCTTGAGC 2248
BSNT_00581___ 2249 GCGTCGGTTTATCCCATGTCCAATCCGTGTTAAACGATCCGGAAAAGCGG 2298
|||||||||||||.||||||||||||||.|||||||||||||||||..||
RBAM_003510__ 2249 GCGTCGGTTTATCTCATGTCCAATCCGTATTAAACGATCCGGAAAAAAGG 2298
BSNT_00581___ 2299 CAGGAGCTGAACGACCGAATGAATGAAACACTCTCTGTCCACAAGGATCC 2348
||||||||.||||||.||||||||||.|||||||||||||||||.|||||
RBAM_003510__ 2299 CAGGAGCTCAACGACAGAATGAATGAGACACTCTCTGTCCACAAAGATCC 2348
BSNT_00581___ 2349 GTGGAAAGACTT-TTTAGAGGATAAACAAACCTCGAAAGAATTATTTGAA 2397
||||.||.|||| .||| |.||||||.||.|.||.|||||..||||.|||
RBAM_003510__ 2349 GTGGCAATACTTCCTTA-AAGATAAAAAAGCATCTAAAGATCTATTCGAA 2397
BSNT_00581___ 2398 AATGTCGTGACCACATCATAA 2418
||||||||.||.||.||||||
RBAM_003510__ 2398 AATGTCGTCACGACTTCATAA 2418
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