Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00583 and RBAM_003530
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_00583___nasB.1.9828.seq
# -bsequence dna-align/RBAM_003530___nasB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00583___nasB-RBAM_003530___nasB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00583___nasB-RBAM_003530___nasB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00583___nasB
# 2: RBAM_003530___nasB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2377
# Identity: 1772/2377 (74.5%)
# Similarity: 1772/2377 (74.5%)
# Gaps: 110/2377 ( 4.6%)
# Score: 6433.0
#
#
#=======================================
BSNT_00583___ 1 ATGAAGAAACAAAGATTAGTGTTAGCGGGAAACGGCATGGCCGGAATCCG 50
||||||||||||.|||||.|...|||.||.|||||.||||||||||||||
RBAM_003530__ 1 ATGAAGAAACAACGATTAATTGCAGCAGGGAACGGAATGGCCGGAATCCG 50
BSNT_00583___ 51 CTGTATTGAAGAAGTATTAAAGCTGAATCGCCACATGTTTGAGATTGTCA 100
||||||||||.|..|.||||||.||||.||..||||||||||||||||||
RBAM_003530__ 51 CTGTATTGAACACATTTTAAAGATGAACCGTGACATGTTTGAGATTGTCA 100
BSNT_00583___ 101 TTTTCGGAAGCGAGCCGCATCCCAATTACAATCGCATTCTCTTATCCTCT 150
|||||||||||||.||.||||||||||||||||||||||||||||||||.
RBAM_003530__ 101 TTTTCGGAAGCGAACCTCATCCCAATTACAATCGCATTCTCTTATCCTCC 150
BSNT_00583___ 151 GTATTGCAGGGTGAAGCGTCACTCGATGATATTACACTGAACAGCAAGGA 200
||.||.||.|||||.|..||.||.|||||.|||||.|||||.|||...||
RBAM_003530__ 151 GTTTTACAAGGTGAGGTTTCGCTTGATGACATTACGCTGAATAGCCGCGA 200
BSNT_00583___ 201 TTGGTACGACAAGCACGGGATCACGCTTTACACAGGCGAAACGGTTATTC 250
.||||||||.||..||||.||.|||||||||||.||.|||||||||.|..
RBAM_003530__ 201 ATGGTACGAAAAAAACGGAATTACGCTTTACACGGGAGAAACGGTTGTAG 250
BSNT_00583___ 251 AGATTGATACAGATCAGCAGCAGGTCATCACAGATCGGAAACGCACTCTG 300
|.|||||||||||.|.||||...||||..||.||||||||.||||...||
RBAM_003530__ 251 ACATTGATACAGAACGGCAGGTTGTCACAACGGATCGGAAGCGCAGCATG 300
BSNT_00583___ 301 TCGTATGA-CAAATTAATAGTGGCAACAGGCTCCTCCCCTCATATTCTCC 349
.|.||.|| |||| |.||..|.|||||.||||||||.|||.|||||||||
RBAM_003530__ 301 ACTTACGATCAAA-TCATCCTTGCAACGGGCTCCTCTCCTTATATTCTCC 349
BSNT_00583___ 350 CTATCCCCGGGGCAGACAAAAAAGGTGTCTATGGATTTCGGACAATAGAA 399
|.||.|||||.|||||.|||.|||||||.||.||.||||||||||||||.
RBAM_003530__ 350 CCATACCCGGAGCAGATAAAGAAGGTGTGTACGGCTTTCGGACAATAGAG 399
BSNT_00583___ 400 GACTGCCAAGCGCTGATGAACATG-GCCCAGCAC--TTTCAAAAGGCTGC 446
|||||||||.|.||.||.| ||| |.||||| | |.|||||||||.||
RBAM_003530__ 400 GACTGCCAATCCCTTATCA--ATGCGGCCAGC-CGGTATCAAAAGGCGGC 446
BSNT_00583___ 447 GGTAATCGGAGCCGGCTTATTAGGACTGGAAGCTGCAGTAGGTTTACAGC 496
|||.|||||.|||||.||||||||.||.|||||.||.||.||.||||.||
RBAM_003530__ 447 GGTCATCGGCGCCGGTTTATTAGGTCTTGAAGCGGCCGTCGGCTTACGGC 496
BSNT_00583___ 497 ATCTCGGTATGGATGTCAGCGTCATTCACCACTCCGCCGGCATTATGCAA 546
|.|||||.|||||.||||||||||||||||||||..|||.||||||||||
RBAM_003530__ 497 AGCTCGGCATGGACGTCAGCGTCATTCACCACTCTTCCGCCATTATGCAA 546
BSNT_00583___ 547 AAACAGCTCGATCAAACAGCGGCGCGGCTGCTGCAAACAGAGCTGGAACA 596
||||||||.||||||||.||..|.||.||||||||.|.|||||||||||.
RBAM_003530__ 547 AAACAGCTTGATCAAACGGCATCCCGCCTGCTGCAGAAAGAGCTGGAACG 596
BSNT_00583___ 597 AAAAGGCCTAACCTTTCTTTTGGAGAAAGACACCGTCTCCATTTCCGGCG 646
|||||||.||..|||||||||.|||||||.|||.|..||||||.|.||
RBAM_003530__ 597 AAAAGGCTTAGTCTTTCTTTTAGAGAAAGGCACGGCATCCATTACAGG-- 644
BSNT_00583___ 647 CCACGAA------GGCAGACCGAATCCATTTTAAAGATGGCTCTTCATTA 690
||| |||.||..|.||.|.|||.|||||..|.|||||..||
RBAM_003530__ 645 ----GAACTCACGGGCGGAAGGCATTCGTTTCAAAGACAGTTCTTCCATA 690
BSNT_00583___ 691 AAAGCAGACTTGATTGTGATGGCGGCCGGCGTCAAACCGAATATTGAATT 740
.||||||||.|||||||.|||||.|||||.||.|..||.|||||...|||
RBAM_003530__ 691 GAAGCAGACCTGATTGTCATGGCCGCCGGTGTGAGGCCCAATATCCGATT 740
BSNT_00583___ 741 GGCTGTATCCGCTGGAATCAAAGTGAACCGCGGGATCATCGTGAATGACT 790
||||..|||.||.|||.|...|||||||.|.||.||||||||.|||.|.|
RBAM_003530__ 741 GGCTCCATCTGCCGGACTTTCAGTGAACAGAGGAATCATCGTCAATCAAT 790
BSNT_00583___ 791 TCATGCAGACAAGCGAACCGAATATCTACGCCGTTGGTGAATGCGCTGAG 840
||||||||||.|.|.||||||||.|.||.|||||.|||||||||||.|||
RBAM_003530__ 791 TCATGCAGACGAACAAACCGAATGTGTATGCCGTCGGTGAATGCGCGGAG 840
BSNT_00583___ 841 CATAACGGAACGGTGTACGGATTGGTGGCTCCGCTTTATGAGCAGGGAAA 890
|||.||||.|..||.||||||||||.|.|.|||||||||||.||||||||
RBAM_003530__ 841 CATGACGGGATTGTATACGGATTGGCGCCGCCGCTTTATGAACAGGGAAA 890
BSNT_00583___ 891 AGCGCTCGC-CAGTCATATTTGCGGCGTTCCATGTGAGGAATATCAAGGC 939
||.|||||| ||| |||.|.||||||||.||.||.||.|..|.|||||||
RBAM_003530__ 891 AGTGCTCGCGCAG-CATCTATGCGGCGTCCCGTGCGAAGGGTTTCAAGGC 939
BSNT_00583___ 940 TCAGCACCATCAGCGGCGTTAAAAATAGCTGGAATCGATGTGTGGTCAGC 989
|..||||.|||.||.||.|||||||||||.||.||.|||||.|||||.||
RBAM_003530__ 940 TTTGCACAATCTGCAGCCTTAAAAATAGCCGGTATTGATGTATGGTCGGC 989
BSNT_00583___ 990 AGGAAAGATCCAAGAGGATGAACGCAC-GACGAGCATCAAAA----TCTA 1034
|||||||.|.||.||||||||.|.||| |.|| |||| | ||.|
RBAM_003530__ 990 AGGAAAGGTGCACGAGGATGAGCACACAGCCG-GCAT----ATTGTTCCA 1034
BSNT_00583___ 1035 CGACGAACAAGCAGGCGTTTATAAAAAAGCGCTTTTTGTAGATGAAAAAC 1084
.||.||.||.||||||.|.||.|||||||||||.||||..||.||.||||
RBAM_003530__ 1035 TGATGAGCATGCAGGCATCTACAAAAAAGCGCTCTTTGAGGACGATAAAC 1084
BSNT_00583___ 1085 TGGCCGGCGTTATTTTATTCGGAGACACCCGTGACAAGCAGCGGCTTCTC 1134
.|||||||.|||||||||||||.|||||.||.|..||.||||||||||||
RBAM_003530__ 1085 CGGCCGGCTTTATTTTATTCGGGGACACGCGCGGTAAACAGCGGCTTCTC 1134
BSNT_00583___ 1135 GACAGCCTCCTTAAACAACGAGACATCTCCATTGTCAAAAAGCAGATCAT 1184
|||||.||..|.||.|||.||||.||.|||||.||.|||||.|||.||||
RBAM_003530__ 1135 GACAGTCTTGTGAAGCAAAGAGATATTTCCATCGTGAAAAAACAGCTCAT 1184
BSNT_00583___ 1185 CGAACCGGAGACA-AGCGGCCCTTTA---TTTGAATCCATGCCTTCCAGT 1230
.|||||||| .|| .|||| |.|| |||||||||||||||.||..|
RBAM_003530__ 1185 GGAACCGGA-TCAGGGCGG---TATATCCTTTGAATCCATGCCTCCCCAT 1230
BSNT_00583___ 1231 GAAACGATTTGCCAATGCAACACAGTGACGAAAGGCGCGATTGAAGAAGC 1280
|||||.|||||||||||||.|.|||||||.||.|||.|.|||||||||||
RBAM_003530__ 1231 GAAACCATTTGCCAATGCAGCTCAGTGACCAAGGGCTCCATTGAAGAAGC 1280
BSNT_00583___ 1281 GGTGCACACGAATA--GCTTAACAACTGTTGAGGAAGTCAAGCAC-TGCA 1327
||||.||| |||| ||||||.|||.|..||||||||.|||||| || |
RBAM_003530__ 1281 GGTGAACA--AATATGGCTTAAAAACCGCGGAGGAAGTGAAGCACATG-A 1327
BSNT_00583___ 1328 CCAAAGCCACTGGGTCCTGCGGAGGATGCAAACCGCTCGTTGAAGACCTT 1377
|.|||||..|.||.||.|||||||||||||..|||||||||||||||.|.
RBAM_003530__ 1328 CAAAAGCGTCCGGATCTTGCGGAGGATGCAGGCCGCTCGTTGAAGACTTG 1377
BSNT_00583___ 1378 TTGAGGCACATGACCAACAGCGAATATACGAAGCCCGCCGGCACA-CCTT 1426
.|||.|.|.|||.|.|.|...||.||.||.||.|||.||.|| || ||||
RBAM_003530__ 1378 CTGAAGTATATGGCGAGCGATGATTACACAAAACCCTCCCGC-CAGCCTT 1426
BSNT_00583___ 1427 CGTTTTGCAGCTGTACTGATTTTACAGAAGACGACATCATCGCTGAGCTT 1476
||||||||.||||.||.|||||.|||||.||.||..|||||||.||..||
RBAM_003530__ 1427 CGTTTTGCGGCTGCACCGATTTGACAGAGGAAGAAGTCATCGCCGAAATT 1476
BSNT_00583___ 1477 CAGCGCAGGCCATTCACTAATCCGGCAGAAGTGATGAACCAGCTTGACTG 1526
...|||.|.||.||||||.||.|.||.||.||.||||...||.|.|.|||
RBAM_003530__ 1477 TGCCGCCGTCCGTTCACTGATGCCGCCGAGGTAATGAGAGAGATCGGCTG 1526
BSNT_00583___ 1527 GAAAACAAAAAACGGATGCAGTACTTGTGTTCCTGCGATTCAATACTATC 1576
|||||||.|||||||.|||.|.|.||||.||||.|||.||||.||.||..
RBAM_003530__ 1527 GAAAACAGAAAACGGCTGCCGCATTTGTATTCCGGCGCTTCACTATTACT 1576
BSNT_00583___ 1577 TGGAAATGCTGTAC----CCTGGGTTTGTCCAG---CCTGAGCCAGCCAC 1619
|||||| |.|| ||||..|||.|.||| ..|||...|.|..|
RBAM_003530__ 1577 TGGAAA----GGACGCGGCCTGATTTTATGCAGTTCAATGAAATATCGGC 1622
BSNT_00583___ 1620 TGAAGAGACATGCATCCTGATCCCGCAAATGTACGGCGGGCGGACAAACG 1669
.|||||||||||||.||||||.|||||||||||||||||.|.|||||..|
RBAM_003530__ 1623 AGAAGAGACATGCACCCTGATTCCGCAAATGTACGGCGGACTGACAAGTG 1672
BSNT_00583___ 1670 CGG-AGCAGCTAAGAACCATCGCCAACATCATTGAGGCATACAGCATTCC 1718
||| || ||||.|.||.||||||..||.||||.||.||||||.||||.||
RBAM_003530__ 1673 CGGCAG-AGCTCAAAAACATCGCAGACGTCATCGAAGCATACGGCATCCC 1721
BSNT_00583___ 1719 CGACGTATCCATCACTCACGGCCAAAGGCTGAAGCTTTCCGGGATCAAGC 1768
||..||.||.||.|||.||.|.||..||||||.|||||||||.||||.||
RBAM_003530__ 1722 CGGGGTTTCGATGACTGACAGTCACCGGCTGAGGCTTTCCGGAATCAGGC 1771
BSNT_00583___ 1769 CTGCGGATCTCCCGAACATAAAAAAAGACCTGAAGATGCCCGTTTACACT 1818
|....||.||..|.|.|||.|.|||||..|||||.|||||.||||.|.|
RBAM_003530__ 1772 CAAATGACCTTGCAAGCATCAGAAAAGCACTGAACATGCCGGTTTTCTC- 1820
BSNT_00583___ 1819 AATGAACACCGACACGCGCTG-------CAAAGCATCAAAGCATGTACAT 1861
.|.|||.||| ||||| ||| ||||.|||||||||.|
RBAM_003530__ 1821 -----CCCCCGGCAC-CGCTGGACGATTCAA---ATCAGAGCATGTACGT 1861
BSNT_00583___ 1862 GCGGGCAAAATCGATCAATTCAGCAGCTGGCAGCCCAAATCGAA--AGAC 1909
||||.||..||||.||..||||..||||||||..|...||.||| |||.
RBAM_003530__ 1862 GCGGACAGCATCGCTCCTTTCAAGAGCTGGCAAGCAGGATTGAACGAGAT 1911
BSNT_00583___ 1910 AACTTGAGATGCTTCCCTTACCCGCTCCCATTTCTATCAGCTTATCATGT 1959
|.| ||.|.||||.||.|..|||||..|.|.||..|||||||.||||||
RBAM_003530__ 1912 ACC--GACACGCTTGCCGTCTCCGCTTACGTATCCGTCAGCTTGTCATGT 1959
BSNT_00583___ 1960 G-AAACAGACTGCACCGATGCCGCCCTGCAAGATGTCGGCGCAATTCGGA 2008
| ||||| |.|||||||||||...|.|.||.|||.|||||||.||||.||
RBAM_003530__ 1960 GAAAACA-ATTGCACCGATGCTTACATTCAGGATATCGGCGCGATTCAGA 2008
BSNT_00583___ 2009 GACAAGCTGGCTGGGACATTCACATCGGCGGCGTCCGGGGAACTCATGCC 2058
.||||.||||||||||.|||.|.|||||.|||.||||.||||..||.|||
RBAM_003530__ 2009 CACAAACTGGCTGGGAGATTTATATCGGGGGCTTCCGCGGAAAACAAGCC 2058
BSNT_00583___ 2059 CGTTCAGG-AGCTTTGTTTTGCGTGACTGAGAACGAAGACAGCACTGCCG 2107
||..|.|| |||.|| |||||.|||||.||.|||||||||||.||.||||
RBAM_003530__ 2059 CGCGCCGGCAGCCTT-TTTTGTGTGACGGATAACGAAGACAGTACCGCCG 2107
BSNT_00583___ 2108 GCATGATCAAAGGACTGATCCAGTATTATCGGGAAACGGCTCATTACTTA 2157
..|||||.|||||.||.||.||.||||||||.|||||||||||.|||...
RBAM_003530__ 2108 CTATGATGAAAGGCCTTATTCAATATTATCGCGAAACGGCTCACTACAAC 2157
BSNT_00583___ 2158 GAAGGTGTTCATCAGTGGATAGACCGTCTCGGGATCGTTCATATCAGAGA 2207
||||...||.||||.|||.|.|||.|.|||||..||||.|||||||||||
RBAM_003530__ 2158 GAAGCGATTTATCAATGGGTTGACAGACTCGGCCTCGTCCATATCAGAGA 2207
BSNT_00583___ 2208 AGTGCTATTCGAAGAAGACCTAAGGGCACAGCTGCTGGAAAGCCTCCAAA 2257
|.||||.||.||||||||..|..||.|||||||.|||.|||..||||...
RBAM_003530__ 2208 AATGCTGTTTGAAGAAGATATGCGGACACAGCTTCTGAAAAATCTCCGTT 2257
BSNT_00583___ 2258 CAGATCTGTCACTGATTCAAAACCCGACTGTAGAGACGGG----TGCATA 2303
||||..|.||.|||.|.|||||||.|.|| |.|||| .|| .|
RBAM_003530__ 2258 CAGACATATCCCTGCTGCAAAACCTGTCT-----GCCGGGAAAACGC-CA 2301
BSNT_00583___ 2304 TAAGAAAGGATGA-------------- 2316
||.||||||||||
RBAM_003530__ 2302 TACGAAAGGATGAAGCTTTTTGACTGA 2328
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