Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00601 and RBAM_003570

See Amino acid alignment / Visit BSNT_00601 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence dna-align/BSNT_00601___yckC.1.9828.seq
#    -bsequence dna-align/RBAM_003570___yckC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00601___yckC-RBAM_003570___yckC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00601___yckC-RBAM_003570___yckC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00601___yckC
# 2: RBAM_003570___yckC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 487
# Identity:     321/487 (65.9%)
# Similarity:   321/487 (65.9%)
# Gaps:          83/487 (17.0%)
# Score: 1032.0
# 
#
#=======================================

BSNT_00601___      1 ATGAATATTTACAAACCAGCCGGATTTTGGATCAGACTTGGAGCTGCATT     50
                     |||||||||||||.|||.||.|||||||||||||||.|.|||||.|   |
RBAM_003570__      1 ATGAATATTTACAGACCGGCGGGATTTTGGATCAGATTGGGAGCCG---T     47

BSNT_00601___     51 GTTA---GACTACATTA--TAGTCTCCGTGCCGCTTTTGCTGATCTATT-     94
                     |.||   ||||| .|||  ||.| ||.|||||   ||||..||| |||| 
RBAM_003570__     48 GGTACTCGACTA-TTTAATTACT-TCAGTGCC---TTTGGCGAT-TATTT     91

BSNT_00601___     95 ---GGCTGATTACAGGAAAAGACCCAAACGACAGC---ATGTT---CATC    135
                        .||||...|||||||||||.||.||.||.|||   |||.|   ||||
RBAM_003570__     92 TTATGCTGGCAACAGGAAAAGATCCGAATGAGAGCACAATGATCAGCATC    141

BSNT_00601___    136 AGTTTGGTTGTTCTGCTGTATTCTATTTTGCTGCCGGTGTTTTGGCACGG    185
                     |.||||..|      ||.|||.||||||||||.||.||.|..|||.||||
RBAM_003570__    142 ATTTTGACT------CTTTATGCTATTTTGCTCCCTGTATACTGGAACGG    185

BSNT_00601___    186 TTATCTTATCGGAAAAAGGATCTGCGGAATCAGAATCGTAAAAAAAGAAG    235
                     ||||.|||||||.||||.|||||||||.|||.|.|||||.||||||||.|
RBAM_003570__    186 TTATGTTATCGGCAAAAAGATCTGCGGTATCCGCATCGTCAAAAAAGACG    235

BSNT_00601___    236 GATCACAAGTCAGCCTGT-TAACAATGTTTTTACGGGTTATTGTAGCCGG    284
                     |..|.||.|| ||.||.| |.||.|||.||||..|.||..||||.|.|||
RBAM_003570__    236 GCACTCAGGT-AGGCTTTCTCACTATGATTTTGAGAGTGCTTGTGGGCGG    284

BSNT_00601___    285 CCTGGTTTACTTTATA-------ACCTTCGGACTCGGCTTGATCGCCAGC    327
                     ||||       .||||       ||.||.|||.|||||.||||||..|||
RBAM_003570__    285 CCTG-------ATATATGGCGTGACGTTTGGAATCGGCGTGATCGTGAGC    327

BSNT_00601___    328 CTG-ATTCTGATTGCCG---TACGAGAAGACAAACGGACCCTGCATGATT    373
                       | ||||  ||.|.||   |..||||||||||||||.|..|.||.||||
RBAM_003570__    328 --GCATTC--ATGGTCGGAATGAGAGAAGACAAACGGTCAATCCACGATT    373

BSNT_00601___    374 TAATCGCGGGAACATATGTCACTTATGCGACACCAGGTGAAGAAGAACTT    423
                     |..|.||.|||||.||||||||.||.|||                     
RBAM_003570__    374 TTGTAGCAGGAACGTATGTCACATACGCG---------------------    402

BSNT_00601___    424 AATACT----GACGAAGAGATTAGAAAGAGCGAATAA    456
                         ||    ||||||..||||..|||||||||||||
RBAM_003570__    403 ----CTGCCGGACGAATCGATTGAAAAGAGCGAATAA    435


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